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The map label for this gene is yqgF [C]

Identifier: 38233935

GI number: 38233935

Start: 1361421

End: 1361972

Strand: Reverse

Name: yqgF [C]

Synonym: DIP1349

Alternate gene names: 38233935

Gene position: 1361972-1361421 (Counterclockwise)

Preceding gene: 38233936

Following gene: 38233934

Centisome position: 54.73

GC content: 46.2

Gene sequence:

>552_bases
GTGACTGTGCAAAGTTCACGATGTAAGGATTTTTACATGGTAGTTCAACCGGATATTCCCGGAGATAACGATCCTGGGAT
GGGGCGACGACTCGGCGTTGATGTAGGTACAGTTCGAATTGGATTAGCAATGTCCGATTCTGGTGCTCGTATGGCAATGC
CATTCGAAACACTCGCGCGTGAAACAGGACTCAAAGACAGTGATAAGCAAGACATTGACAGAATTGCAGAAGTAATTTGT
GACAATCATATAGTAGAAGTAGTTGTCGGGCTTCCGCGAGATCTAAAAGGAAATGGCTCAAAAAGCGTCAAACATGCCAA
AGATGTCGCTTTTAGAATTCGACGTCGGATGCATAAAAACGGGTGGGAACATGTTGCAGTGAAAATGGCTGATGAGCGTC
TAACCACAGTGGTTGCAACACAAGCTCTCAGAGCCTCTGGTGTTTCAGAGAAAAAGGGGAGAAGGGTGGTTGACCAAGCC
GCAGCAGTAGAAATTCTTCAATCTTGGTTGGATGCCCGAATCAACGTACTAGAGAATCGGACAATCCCGTAG

Upstream 100 bases:

>100_bases
CATAAGTTGGCGTTCGACGGTTACAAATAGGTAACATTTATTTGTTCGGTACGTTGCCGTACGTGTCAATTGTGCCTTTA
AACGTCAAAAGTTTGCTTTA

Downstream 100 bases:

>100_bases
AAAAGCCCACTTGTAGCATAATACGGCGCTGCAACTGAAAATTATCGCTGTAAAAAGTAGAATCAATAATCTAGCAAGGT
CAGTAGCGACCTGAAACGAA

Product: Holliday junction resolvase-like protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 183; Mature: 182

Protein sequence:

>183_residues
MTVQSSRCKDFYMVVQPDIPGDNDPGMGRRLGVDVGTVRIGLAMSDSGARMAMPFETLARETGLKDSDKQDIDRIAEVIC
DNHIVEVVVGLPRDLKGNGSKSVKHAKDVAFRIRRRMHKNGWEHVAVKMADERLTTVVATQALRASGVSEKKGRRVVDQA
AAVEILQSWLDARINVLENRTIP

Sequences:

>Translated_183_residues
MTVQSSRCKDFYMVVQPDIPGDNDPGMGRRLGVDVGTVRIGLAMSDSGARMAMPFETLARETGLKDSDKQDIDRIAEVIC
DNHIVEVVVGLPRDLKGNGSKSVKHAKDVAFRIRRRMHKNGWEHVAVKMADERLTTVVATQALRASGVSEKKGRRVVDQA
AAVEILQSWLDARINVLENRTIP
>Mature_182_residues
TVQSSRCKDFYMVVQPDIPGDNDPGMGRRLGVDVGTVRIGLAMSDSGARMAMPFETLARETGLKDSDKQDIDRIAEVICD
NHIVEVVVGLPRDLKGNGSKSVKHAKDVAFRIRRRMHKNGWEHVAVKMADERLTTVVATQALRASGVSEKKGRRVVDQAA
AVEILQSWLDARINVLENRTIP

Specific function: Could be a nuclease that resolves Holliday junction intermediates in genetic recombination [H]

COG id: COG0816

COG function: function code L; Predicted endonuclease involved in recombination (possible Holliday junction resolvase in Mycoplasmas and B. subtilis)

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the yqgF HJR family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005227
- InterPro:   IPR006641
- InterPro:   IPR012337 [H]

Pfam domain/function: PF03652 UPF0081 [H]

EC number: NA

Molecular weight: Translated: 20234; Mature: 20102

Theoretical pI: Translated: 9.73; Mature: 9.73

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
4.4 %Met     (Translated Protein)
5.5 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
3.8 %Met     (Mature Protein)
4.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTVQSSRCKDFYMVVQPDIPGDNDPGMGRRLGVDVGTVRIGLAMSDSGARMAMPFETLAR
CCCCCCCCCEEEEEECCCCCCCCCCCCCCEECCEECEEEEEEEECCCCCEEECCHHHHHH
ETGLKDSDKQDIDRIAEVICDNHIVEVVVGLPRDLKGNGSKSVKHAKDVAFRIRRRMHKN
HCCCCCCCHHHHHHHHHHHHCCHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHC
GWEHVAVKMADERLTTVVATQALRASGVSEKKGRRVVDQAAAVEILQSWLDARINVLENR
CHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
TIP
CCC
>Mature Secondary Structure 
TVQSSRCKDFYMVVQPDIPGDNDPGMGRRLGVDVGTVRIGLAMSDSGARMAMPFETLAR
CCCCCCCCEEEEEECCCCCCCCCCCCCCEECCEECEEEEEEEECCCCCEEECCHHHHHH
ETGLKDSDKQDIDRIAEVICDNHIVEVVVGLPRDLKGNGSKSVKHAKDVAFRIRRRMHKN
HCCCCCCCHHHHHHHHHHHHCCHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHC
GWEHVAVKMADERLTTVVATQALRASGVSEKKGRRVVDQAAAVEILQSWLDARINVLENR
CHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
TIP
CCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 14602910 [H]