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The map label for this gene is nifU [H]

Identifier: 38233876

GI number: 38233876

Start: 1299222

End: 1299671

Strand: Reverse

Name: nifU [H]

Synonym: DIP1291

Alternate gene names: 38233876

Gene position: 1299671-1299222 (Counterclockwise)

Preceding gene: 38233877

Following gene: 38233875

Centisome position: 52.22

GC content: 43.33

Gene sequence:

>450_bases
ATGAATCTGGAATCAATGTATCAAGAAGTAATTCTTGATCATTATAAGAATCCTCTTCATGCTGGTCTGCGGGAATCTTA
TGATGCAGAAGTGCATCACGTAAATCCTTCCTGCGGCGATGAAATTACTCTTCGTGTTCACTTGTCGGAGGACGGATTAA
CTGTACAAGACGTATCTTATGATGCAGAAGGTTGCTCTATTAGTCAGGCATCGACATCTGTTATGGCAGAAGAGATCGTT
GGTCAGCCAGTTGACAAAGCGCTAGAAAAACTTGCCGAATTCGAAAAAATGATTACTTCACGTGGCAAAGAAGAAGGCGA
TGAGGACCTGATTGGTGACGGAATTGCGTTTGCAGGTGTTTCAAAGTATCCAGCTCGTGTCAAATGTGCATTGCTGGGTT
GGAAGGCTTTTCAAGCAGCAACGTCAGAAGCATTGGAAGGGAAAGTATGA

Upstream 100 bases:

>100_bases
ATTCTATCTTTACAACACTATCGACGAAGTTGATCGCTTAGTAGAGGCTATCGAAGCTGCAAAGAAGTTTTTCGGAGTGA
GTGAGGAAGGAAAGTAGTTC

Downstream 100 bases:

>100_bases
CCGAATCAAATGGTAACTCTGAAATCACAACTACAGAGGGCAATACTGGTCCAGTAGTAGAAAGCAGCCTGGACCCTTTA
GCAGGACGACCGGAACAAAG

Product: putative nitrogen fixation protein NifU-like protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 149; Mature: 149

Protein sequence:

>149_residues
MNLESMYQEVILDHYKNPLHAGLRESYDAEVHHVNPSCGDEITLRVHLSEDGLTVQDVSYDAEGCSISQASTSVMAEEIV
GQPVDKALEKLAEFEKMITSRGKEEGDEDLIGDGIAFAGVSKYPARVKCALLGWKAFQAATSEALEGKV

Sequences:

>Translated_149_residues
MNLESMYQEVILDHYKNPLHAGLRESYDAEVHHVNPSCGDEITLRVHLSEDGLTVQDVSYDAEGCSISQASTSVMAEEIV
GQPVDKALEKLAEFEKMITSRGKEEGDEDLIGDGIAFAGVSKYPARVKCALLGWKAFQAATSEALEGKV
>Mature_149_residues
MNLESMYQEVILDHYKNPLHAGLRESYDAEVHHVNPSCGDEITLRVHLSEDGLTVQDVSYDAEGCSISQASTSVMAEEIV
GQPVDKALEKLAEFEKMITSRGKEEGDEDLIGDGIAFAGVSKYPARVKCALLGWKAFQAATSEALEGKV

Specific function: May be involved in the formation or repair of [Fe-S] clusters present in iron-sulfur proteins (Potential) [H]

COG id: COG0822

COG function: function code C; NifU homolog involved in Fe-S cluster formation

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the nifU family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002871
- InterPro:   IPR011341 [H]

Pfam domain/function: PF01592 NifU_N [H]

EC number: NA

Molecular weight: Translated: 16231; Mature: 16231

Theoretical pI: Translated: 4.34; Mature: 4.34

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.0 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
2.0 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
4.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNLESMYQEVILDHYKNPLHAGLRESYDAEVHHVNPSCGDEITLRVHLSEDGLTVQDVSY
CCHHHHHHHHHHHHCCCHHHHHHHHCCCCEEEECCCCCCCEEEEEEEECCCCCEEEECCC
DAEGCSISQASTSVMAEEIVGQPVDKALEKLAEFEKMITSRGKEEGDEDLIGDGIAFAGV
CCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHCCCHHCCCC
SKYPARVKCALLGWKAFQAATSEALEGKV
CCCCCCEEHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MNLESMYQEVILDHYKNPLHAGLRESYDAEVHHVNPSCGDEITLRVHLSEDGLTVQDVSY
CCHHHHHHHHHHHHCCCHHHHHHHHCCCCEEEECCCCCCCEEEEEEEECCCCCEEEECCC
DAEGCSISQASTSVMAEEIVGQPVDKALEKLAEFEKMITSRGKEEGDEDLIGDGIAFAGV
CCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHCCCHHCCCC
SKYPARVKCALLGWKAFQAATSEALEGKV
CCCCCCEEHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]