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The map label for this gene is yclF [H]

Identifier: 38233780

GI number: 38233780

Start: 1188118

End: 1189614

Strand: Reverse

Name: yclF [H]

Synonym: DIP1190

Alternate gene names: 38233780

Gene position: 1189614-1188118 (Counterclockwise)

Preceding gene: 38233789

Following gene: 38233753

Centisome position: 47.8

GC content: 48.5

Gene sequence:

>1497_bases
ATGCAATTAATTGAACAGCGTTCAATCGACTCTAAAAACAACCGCGCGATGTTTTGGCGCCATCCTCGAATGATGACATC
TGTCGTCAGCATTGAAGCATGGGAGCGCTTCAGCTTCTACGGCATGCAAGCGATCCTAGGTTTCTATCTCTACTATTCGA
TTGCCGACGGCGGACTCGGCATTGCCAAAAAAGATGCAACAGCCTTAATCGGGGCATACGGCGCATTGGTATACCTATGC
ACGTTCATCGGCGGCTGGGTGGGCGACCATCTCCTTGGTGCAGAAAAAACGCTTCTGAGCGGCGCCGCGTTGCTCGTCAT
AGGCCACATAAGTCTGTCTACATTTCCTGGTTTTTACGGACTAGCGATAGGTTTACCCCTGATCGCTGTGGGATCCGGCT
TACTAAAAACAGCTGCTATCACCGTGCTAGGCGCAGTTTACGATGAAAATCCGAAACAGCGTGAAACCGGCTTTCAGTTC
TTTTATCTAGGAATCCAACTGGCAGCATTTTTCGGCCCGCTCCTTACCGGCTGGTTAGCTCAACAGTATTCTTTCCACAT
CGGGTTTATAGCAGCAGCCTTTCTCATGATTATCGGCATATCGCTCTATGTTTTCGCACGCCCCGCTGCCATGGCGTCGC
TTTGCACACAAACTCGGCAGCGTATCACACAACCTCAATTGACTGCAACTACTACCCAAGCAATATTCATTGTGGGAGGC
AGCACCCTCGCTTTATTTAGCGCAACATTCTGCGTTGCAACAGGCTTGATTAAACCAGTAGTCCTTGCAACATTTCTATT
AGCACTGACACTGGGCGCGGCTCTGCTTCTCTACACTTCTATGTTTCGGAGCAGTGAAGTCACGCTAGCAGAAAAGATTC
AGTTGCTACGCTACATCCCTATCTTTTTAGCATCGGTAGCCTTTTGGGCAATTATGAACCAAACCTACGGAGTTTTAGCA
GTTTACTCCGATGTACGCCTTAACCGCTCAGTTGGCGACTTCTTAATACCAGCTGCTTGGCTACAATCACTGAACCCTTT
TTATGTGTTCATACTTTCGCTTCCGCTTGCCTACCTATGGTTACGCCTTGGCGATCGCAGCCCCCGCCCTGCAACTAAGC
TTTCAATCGGTGTCGGAATTGCCGGATTAGGTTTTGCAATTTTAATCCCCTACGCAGGTGGCGAACCTAACTCCACACCA
TTTATTGTCCTGGCAATCAGTATTCTTGTAACAGCCATAGGTGAACTGCTGATTGGCCCAATTGGCATGGCAGCAACCGC
TCAATATGCACCCCGAAAATACGCCACCCAATTTTCAGCAATGTTTTTCCTCACCATGGCGATAGGCACAGCGTTATCAG
GACACATTTCTCAGTACTACAACCCAGACAACGCCCAAGCAGAAGCTCGCTATTTTATAGCATGCTCGGCTACCGCAATG
GTTATCGGCATCATCAGCTATATGCTGACTAGAATAATCACGACCAAAACTCAATAG

Upstream 100 bases:

>100_bases
TGTGCGAATGAATTATTTTCCAACTCATCAGTATTGAACACCGTTTAATTGTACGACCAATCGACTGACAATTGTTCCCC
TTTTGGTAATAATGTACGGT

Downstream 100 bases:

>100_bases
TTACCACTCGTCGGGAATGAAAATCGTCGACAATGCCTCTGCAAATGGCTCGCAACCAAGCGAGCCTACGCCATCGTTCA
AACTGCCAATAAATGGCACT

Product: putative peptide transport protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 498; Mature: 498

Protein sequence:

>498_residues
MQLIEQRSIDSKNNRAMFWRHPRMMTSVVSIEAWERFSFYGMQAILGFYLYYSIADGGLGIAKKDATALIGAYGALVYLC
TFIGGWVGDHLLGAEKTLLSGAALLVIGHISLSTFPGFYGLAIGLPLIAVGSGLLKTAAITVLGAVYDENPKQRETGFQF
FYLGIQLAAFFGPLLTGWLAQQYSFHIGFIAAAFLMIIGISLYVFARPAAMASLCTQTRQRITQPQLTATTTQAIFIVGG
STLALFSATFCVATGLIKPVVLATFLLALTLGAALLLYTSMFRSSEVTLAEKIQLLRYIPIFLASVAFWAIMNQTYGVLA
VYSDVRLNRSVGDFLIPAAWLQSLNPFYVFILSLPLAYLWLRLGDRSPRPATKLSIGVGIAGLGFAILIPYAGGEPNSTP
FIVLAISILVTAIGELLIGPIGMAATAQYAPRKYATQFSAMFFLTMAIGTALSGHISQYYNPDNAQAEARYFIACSATAM
VIGIISYMLTRIITTKTQ

Sequences:

>Translated_498_residues
MQLIEQRSIDSKNNRAMFWRHPRMMTSVVSIEAWERFSFYGMQAILGFYLYYSIADGGLGIAKKDATALIGAYGALVYLC
TFIGGWVGDHLLGAEKTLLSGAALLVIGHISLSTFPGFYGLAIGLPLIAVGSGLLKTAAITVLGAVYDENPKQRETGFQF
FYLGIQLAAFFGPLLTGWLAQQYSFHIGFIAAAFLMIIGISLYVFARPAAMASLCTQTRQRITQPQLTATTTQAIFIVGG
STLALFSATFCVATGLIKPVVLATFLLALTLGAALLLYTSMFRSSEVTLAEKIQLLRYIPIFLASVAFWAIMNQTYGVLA
VYSDVRLNRSVGDFLIPAAWLQSLNPFYVFILSLPLAYLWLRLGDRSPRPATKLSIGVGIAGLGFAILIPYAGGEPNSTP
FIVLAISILVTAIGELLIGPIGMAATAQYAPRKYATQFSAMFFLTMAIGTALSGHISQYYNPDNAQAEARYFIACSATAM
VIGIISYMLTRIITTKTQ
>Mature_498_residues
MQLIEQRSIDSKNNRAMFWRHPRMMTSVVSIEAWERFSFYGMQAILGFYLYYSIADGGLGIAKKDATALIGAYGALVYLC
TFIGGWVGDHLLGAEKTLLSGAALLVIGHISLSTFPGFYGLAIGLPLIAVGSGLLKTAAITVLGAVYDENPKQRETGFQF
FYLGIQLAAFFGPLLTGWLAQQYSFHIGFIAAAFLMIIGISLYVFARPAAMASLCTQTRQRITQPQLTATTTQAIFIVGG
STLALFSATFCVATGLIKPVVLATFLLALTLGAALLLYTSMFRSSEVTLAEKIQLLRYIPIFLASVAFWAIMNQTYGVLA
VYSDVRLNRSVGDFLIPAAWLQSLNPFYVFILSLPLAYLWLRLGDRSPRPATKLSIGVGIAGLGFAILIPYAGGEPNSTP
FIVLAISILVTAIGELLIGPIGMAATAQYAPRKYATQFSAMFFLTMAIGTALSGHISQYYNPDNAQAEARYFIACSATAM
VIGIISYMLTRIITTKTQ

Specific function: Unknown

COG id: COG3104

COG function: function code E; Dipeptide/tripeptide permease

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the PTR2/POT transporter (TC 2.A.17) family [H]

Homologues:

Organism=Homo sapiens, GI226371746, Length=219, Percent_Identity=26.9406392694064, Blast_Score=70, Evalue=5e-12,
Organism=Escherichia coli, GI1787922, Length=513, Percent_Identity=25.1461988304094, Blast_Score=151, Evalue=9e-38,
Organism=Escherichia coli, GI1786927, Length=416, Percent_Identity=29.3269230769231, Blast_Score=141, Evalue=1e-34,
Organism=Escherichia coli, GI1790572, Length=460, Percent_Identity=27.3913043478261, Blast_Score=139, Evalue=3e-34,
Organism=Escherichia coli, GI1789911, Length=459, Percent_Identity=26.1437908496732, Blast_Score=130, Evalue=2e-31,
Organism=Caenorhabditis elegans, GI71987453, Length=382, Percent_Identity=25.6544502617801, Blast_Score=67, Evalue=2e-11,
Organism=Drosophila melanogaster, GI28571102, Length=389, Percent_Identity=25.706940874036, Blast_Score=80, Evalue=4e-15,
Organism=Drosophila melanogaster, GI28571100, Length=389, Percent_Identity=25.706940874036, Blast_Score=80, Evalue=4e-15,
Organism=Drosophila melanogaster, GI28571098, Length=389, Percent_Identity=25.706940874036, Blast_Score=79, Evalue=5e-15,
Organism=Drosophila melanogaster, GI24639585, Length=354, Percent_Identity=24.2937853107345, Blast_Score=69, Evalue=5e-12,
Organism=Drosophila melanogaster, GI24639583, Length=354, Percent_Identity=24.2937853107345, Blast_Score=69, Evalue=5e-12,
Organism=Drosophila melanogaster, GI24639581, Length=354, Percent_Identity=24.5762711864407, Blast_Score=69, Evalue=6e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR020846
- InterPro:   IPR016196
- InterPro:   IPR000109
- InterPro:   IPR005279
- InterPro:   IPR018456 [H]

Pfam domain/function: PF00854 PTR2 [H]

EC number: NA

Molecular weight: Translated: 53915; Mature: 53915

Theoretical pI: Translated: 9.51; Mature: 9.51

Prosite motif: PS50850 MFS

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQLIEQRSIDSKNNRAMFWRHPRMMTSVVSIEAWERFSFYGMQAILGFYLYYSIADGGLG
CCCCHHCCCCCCCCCEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
IAKKDATALIGAYGALVYLCTFIGGWVGDHLLGAEKTLLSGAALLVIGHISLSTFPGFYG
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCCCEEEEEEHHHHHCCCHHH
LAIGLPLIAVGSGLLKTAAITVLGAVYDENPKQRETGFQFFYLGIQLAAFFGPLLTGWLA
HHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHH
QQYSFHIGFIAAAFLMIIGISLYVFARPAAMASLCTQTRQRITQPQLTATTTQAIFIVGG
HHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHCCCCCCEEECEEEEEEECC
STLALFSATFCVATGLIKPVVLATFLLALTLGAALLLYTSMFRSSEVTLAEKIQLLRYIP
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
IFLASVAFWAIMNQTYGVLAVYSDVRLNRSVGDFLIPAAWLQSLNPFYVFILSLPLAYLW
HHHHHHHHHHHHHCCCCEEEEEECHHCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
LRLGDRSPRPATKLSIGVGIAGLGFAILIPYAGGEPNSTPFIVLAISILVTAIGELLIGP
HHHCCCCCCCCCEEEECCCHHHCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHCC
IGMAATAQYAPRKYATQFSAMFFLTMAIGTALSGHISQYYNPDNAQAEARYFIACSATAM
CCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEHHHHH
VIGIISYMLTRIITTKTQ
HHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MQLIEQRSIDSKNNRAMFWRHPRMMTSVVSIEAWERFSFYGMQAILGFYLYYSIADGGLG
CCCCHHCCCCCCCCCEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
IAKKDATALIGAYGALVYLCTFIGGWVGDHLLGAEKTLLSGAALLVIGHISLSTFPGFYG
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCCCEEEEEEHHHHHCCCHHH
LAIGLPLIAVGSGLLKTAAITVLGAVYDENPKQRETGFQFFYLGIQLAAFFGPLLTGWLA
HHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHH
QQYSFHIGFIAAAFLMIIGISLYVFARPAAMASLCTQTRQRITQPQLTATTTQAIFIVGG
HHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHCCCCCCEEECEEEEEEECC
STLALFSATFCVATGLIKPVVLATFLLALTLGAALLLYTSMFRSSEVTLAEKIQLLRYIP
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
IFLASVAFWAIMNQTYGVLAVYSDVRLNRSVGDFLIPAAWLQSLNPFYVFILSLPLAYLW
HHHHHHHHHHHHHCCCCEEEEEECHHCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
LRLGDRSPRPATKLSIGVGIAGLGFAILIPYAGGEPNSTPFIVLAISILVTAIGELLIGP
HHHCCCCCCCCCEEEECCCHHHCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHCC
IGMAATAQYAPRKYATQFSAMFFLTMAIGTALSGHISQYYNPDNAQAEARYFIACSATAM
CCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEHHHHH
VIGIISYMLTRIITTKTQ
HHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8969502; 9384377 [H]