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The map label for this gene is ompU [H]

Identifier: 37680904

GI number: 37680904

Start: 2758446

End: 2759450

Strand: Direct

Name: ompU [H]

Synonym: VV2720

Alternate gene names: 37680904

Gene position: 2758446-2759450 (Clockwise)

Preceding gene: 37680901

Following gene: 37680905

Centisome position: 82.23

GC content: 46.37

Gene sequence:

>1005_bases
ATGAAAAAGACATTAATCGCACTTTCTGTATCTGCTGCTGCAGTGGCAACTGGTGTTAACGCTGCTGAACTTTACAACCA
AGATGGTACTTCTCTAGACATGGGTGGCCGTGCTGAAGCTCGCCTATCTATGAAAGATGGTAAAGTTGCAGACAACTCTC
GTATCCGTCTTAACTTCCTAGGTAAAGTAGAAATCCAAGACGGCCTATACGGCGTTGGTTTCTACGAAGGTGAATTCACT
ACTGCAGATGAAGGCGAAAACAAAACCAACAACAACCTAGACAATCGTTACACTTACGCGGGTCTAGGTGGCAAGTTCGG
TGAAGTGACTTACGGTAAAAACGATGGCGCACTAGGCGTAATCACCGACTTCACCGATATCATGGCTTACCACGGTAACT
CTGCGGCAGATAAAATCGCTGTTGCTGACCGCGTAGACAACATGATCGCTTACAAAGGCCAATTCGACGCACTTAGCGTG
AAAGCAAGCTACCGTTTTGCTGACCGTTCAGAAGGCACTGGCGCAAACGATGGTAAATATGTAGATAACGGTCAAGATGG
TTACTCTCTATCTGCTATCTACGCTATCGGCCAAACTGGCCTAACGCTTGGTGGTGGTTACGCTGATCAAGACGAGCAAA
ATGAATACATGCTAGCGGCGTCTTACACTATGGGCGATCTATACTTTGCAGGTATCTACACAGATGGCGAAAAAGCGAAG
AAAGACGGCGATTACACTGGTTACGAGCTAGCAGCTAAGTACACTATGGGTCAAACCGTGTTCACCACTACGTACAACAA
CGCAGAAACGAACAGCCAAACTTCTGCTGATAACTTCGCCGTTGACGCGACGTACTACTTCAAACCTAACTTCCGTGGTT
ACGTTTCTTACAACTTCAACCTAATCGACTCTGGCGATAAACTAGGTCAAGTTGGTGGCAACACTACAGCTTCTAAGATT
GATGCAGAAGACGAGCTAGCACTAGGTCTACGTTACGACTTCTAA

Upstream 100 bases:

>100_bases
GATGCATCTCATTTATGAATCTAGAATCATAGTGATAATCTGTGAGATATTCGTCTCACAACAAAAAGATTATGGACAGC
TAAACTAGGACAACAAAACA

Downstream 100 bases:

>100_bases
TTTCAGCATTAACTGAATCGCAAACGCCCGCAACTAGCGGGCGTTTTTTATCCTCGCTATAATCAAGCCATTCTAGATAG
ATTGGGTTGTCACTATGCGT

Product: outer membrane protein OmpU

Products: NA

Alternate protein names: Porin ompU [H]

Number of amino acids: Translated: 334; Mature: 334

Protein sequence:

>334_residues
MKKTLIALSVSAAAVATGVNAAELYNQDGTSLDMGGRAEARLSMKDGKVADNSRIRLNFLGKVEIQDGLYGVGFYEGEFT
TADEGENKTNNNLDNRYTYAGLGGKFGEVTYGKNDGALGVITDFTDIMAYHGNSAADKIAVADRVDNMIAYKGQFDALSV
KASYRFADRSEGTGANDGKYVDNGQDGYSLSAIYAIGQTGLTLGGGYADQDEQNEYMLAASYTMGDLYFAGIYTDGEKAK
KDGDYTGYELAAKYTMGQTVFTTTYNNAETNSQTSADNFAVDATYYFKPNFRGYVSYNFNLIDSGDKLGQVGGNTTASKI
DAEDELALGLRYDF

Sequences:

>Translated_334_residues
MKKTLIALSVSAAAVATGVNAAELYNQDGTSLDMGGRAEARLSMKDGKVADNSRIRLNFLGKVEIQDGLYGVGFYEGEFT
TADEGENKTNNNLDNRYTYAGLGGKFGEVTYGKNDGALGVITDFTDIMAYHGNSAADKIAVADRVDNMIAYKGQFDALSV
KASYRFADRSEGTGANDGKYVDNGQDGYSLSAIYAIGQTGLTLGGGYADQDEQNEYMLAASYTMGDLYFAGIYTDGEKAK
KDGDYTGYELAAKYTMGQTVFTTTYNNAETNSQTSADNFAVDATYYFKPNFRGYVSYNFNLIDSGDKLGQVGGNTTASKI
DAEDELALGLRYDF
>Mature_334_residues
MKKTLIALSVSAAAVATGVNAAELYNQDGTSLDMGGRAEARLSMKDGKVADNSRIRLNFLGKVEIQDGLYGVGFYEGEFT
TADEGENKTNNNLDNRYTYAGLGGKFGEVTYGKNDGALGVITDFTDIMAYHGNSAADKIAVADRVDNMIAYKGQFDALSV
KASYRFADRSEGTGANDGKYVDNGQDGYSLSAIYAIGQTGLTLGGGYADQDEQNEYMLAASYTMGDLYFAGIYTDGEKAK
KDGDYTGYELAAKYTMGQTVFTTTYNNAETNSQTSADNFAVDATYYFKPNFRGYVSYNFNLIDSGDKLGQVGGNTTASKI
DAEDELALGLRYDF

Specific function: Uptake Of Inorganic Phosphate, Phosphorylated Compounds, And Some Other Negatively Charged Solutes. [C]

COG id: COG3203

COG function: function code M; Outer membrane protein (porin)

Gene ontology:

Cell location: Cell outer membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the Gram-negative porin family [H]

Homologues:

Organism=Escherichia coli, GI1786436, Length=375, Percent_Identity=27.2, Blast_Score=100, Evalue=2e-22,
Organism=Escherichia coli, GI1787641, Length=367, Percent_Identity=26.7029972752044, Blast_Score=77, Evalue=2e-15,
Organism=Escherichia coli, GI1788544, Length=380, Percent_Identity=26.8421052631579, Blast_Score=75, Evalue=9e-15,
Organism=Escherichia coli, GI1787160, Length=377, Percent_Identity=27.0557029177719, Blast_Score=72, Evalue=5e-14,

Paralogues:

None

Copy number: 794 Molecules/Cell In: Growth Phase, Glucose-minimal MOPS Media. [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001702 [H]

Pfam domain/function: PF00267 Porin_1 [H]

EC number: NA

Molecular weight: Translated: 35966; Mature: 35966

Theoretical pI: Translated: 4.22; Mature: 4.22

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKTLIALSVSAAAVATGVNAAELYNQDGTSLDMGGRAEARLSMKDGKVADNSRIRLNFL
CCCEEEEEEECHHHHHCCCCHHHHHCCCCCEECCCCCCEEEEEECCCCCCCCCEEEEEEE
GKVEIQDGLYGVGFYEGEFTTADEGENKTNNNLDNRYTYAGLGGKFGEVTYGKNDGALGV
EEEEECCCEEEEEEECCEEECCCCCCCCCCCCCCCEEEEEECCCCCCEEEECCCCCCEEE
ITDFTDIMAYHGNSAADKIAVADRVDNMIAYKGQFDALSVKASYRFADRSEGTGANDGKY
EECHHHHHEECCCCHHHHEEEHHHHCCEEEECCCCCEEEEEEEEEECCCCCCCCCCCCEE
VDNGQDGYSLSAIYAIGQTGLTLGGGYADQDEQNEYMLAASYTMGDLYFAGIYTDGEKAK
CCCCCCCCEEEEEEEECCCCEEECCCCCCCCCCCCEEEEEEEEECCEEEEEEEECCHHHC
KDGDYTGYELAAKYTMGQTVFTTTYNNAETNSQTSADNFAVDATYYFKPNFRGYVSYNFN
CCCCCCCEEEEEEEECCCEEEEEECCCCCCCCCCCCCCEEEEEEEEECCCCEEEEEEEEE
LIDSGDKLGQVGGNTTASKIDAEDELALGLRYDF
EEECCCHHHCCCCCCCHHCCCCCCCEEEEEEECC
>Mature Secondary Structure
MKKTLIALSVSAAAVATGVNAAELYNQDGTSLDMGGRAEARLSMKDGKVADNSRIRLNFL
CCCEEEEEEECHHHHHCCCCHHHHHCCCCCEECCCCCCEEEEEECCCCCCCCCEEEEEEE
GKVEIQDGLYGVGFYEGEFTTADEGENKTNNNLDNRYTYAGLGGKFGEVTYGKNDGALGV
EEEEECCCEEEEEEECCEEECCCCCCCCCCCCCCCEEEEEECCCCCCEEEECCCCCCEEE
ITDFTDIMAYHGNSAADKIAVADRVDNMIAYKGQFDALSVKASYRFADRSEGTGANDGKY
EECHHHHHEECCCCHHHHEEEHHHHCCEEEECCCCCEEEEEEEEEECCCCCCCCCCCCEE
VDNGQDGYSLSAIYAIGQTGLTLGGGYADQDEQNEYMLAASYTMGDLYFAGIYTDGEKAK
CCCCCCCCEEEEEEEECCCCEEECCCCCCCCCCCCEEEEEEEEECCEEEEEEEECCHHHC
KDGDYTGYELAAKYTMGQTVFTTTYNNAETNSQTSADNFAVDATYYFKPNFRGYVSYNFN
CCCCCCCEEEEEEEECCCEEEEEECCCCCCCCCCCCCCEEEEEEEEECCCCEEEEEEEEE
LIDSGDKLGQVGGNTTASKIDAEDELALGLRYDF
EEECCCHHHCCCCCCCHHCCCCCCCEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 12620739 [H]