Definition | Vibrio vulnificus YJ016 chromosome I, complete sequence. |
---|---|
Accession | NC_005139 |
Length | 3,354,505 |
Click here to switch to the map view.
The map label for this gene is yejM [C]
Identifier: 37680800
GI number: 37680800
Start: 2645792
End: 2647630
Strand: Direct
Name: yejM [C]
Synonym: VV2616
Alternate gene names: 37680800
Gene position: 2645792-2647630 (Clockwise)
Preceding gene: 37680796
Following gene: 37680802
Centisome position: 78.87
GC content: 47.69
Gene sequence:
>1839_bases ATGGGATTCAAAAAGATGTTGCGAAAACTCTCCTCCAATAGCGCGTGGCTGATTGCTTTTTTTGCTTGCTTCACGGTTTA TCTGTCCATCGCCTGTTACCCGTTTGTACTCTCATCCGATCCCTCTCAAGATCTGTCGGGACTACAAAGCTTCTATCTTA TTGCAACCCAGTTGGGCTGGCTCGGTTTACTCAGCTTACCCATCATGCTGCTCAGTCTTCCACTGACACTGTTGCCAACT CGACTGTTCAAAGGCATCGTCATCACACTTGCCGCTCTGTTAGTGATTGCGCTGAAGATCGATATCACGGTTTTCCAACA CTATAAATTTCATATCAATGGCTTGCTGATCCGCATGTTTTTTGATGGCGGGAACGAAGTCTTCAACATCTCTTGGCTGA GTTGGTTGATTTTCATCTCGGAGATTGCGGTGATGTTCATTGGCCTCGCCATCGCGGTCTGGCTCAGCAAACTCTTAGCC AACAGCAAACTCAAATTCGCTTTTGTCGCATTATGGTTTGTGATGTTGCTGAGCAGCCAAATGGTGCATGCGTATAAAAA TGCGTTGTACGACAATGAAGTCAGCCAATTTACCAATAACTGGCCGCTTTATTACCCACTCACCGCCCGCTCTTTCATGT ACAAAAACGGCTTTGTCGATGAAAAGATTGCGGCGCAAAATCGCGTTGAGTTGAAAAACGTCGAGGGCAGTCAACTGGAC TACCCACTTGAGCCCGTCAGCTTACCGACACAAACAAAACAGCCCAACGTGCTGTTTATCTTAGTGGACGCTTGGCGACA CAGCGACGCCACGGCAGAAATTATGCCTAACGTCAGCCAATTTGCACAAAAGACGGCCAACTTTTCGCAGCACATGAGTG GCGGCAATTCTACCCAAGCGGGCATGTTTAGCCTGTTCTATAGCCTACCTGCCACCTATTGGGACAGTTTTTACGCCAGT CAAACCGCTCCAGTGTTTATGGATAGCCTGCAAAGCGCCGGATATCGCATGGGAATCTTCGGTTCAGCGTCGCTGACCAG CCCTCCTTTGTCACGCACTGTCTTTAAAAACGTCAAAGATCTGCGCTTGAAAACGCCAGGAACAACACAAGTTGAACGCG ACGCGCGTATTACTGAAGATTTTATCGCCTTTGAAGCGCAGCCCAGTGATCAGCCCTATTTCGGTTTTCTGTTCTACGAC TCTGCCCATGGCACCGAATTTCCTGAACCAGAAGGTGCGAAATTCACACCGTATTGGGAACGCGTGGATCATATCTTGCT CAACAACGATTTTGATGCTGAGCTGTACCATAATCGCTATAAGAATTCGCTCTACTACATTGATGGCTTAATCGGCAAAG TACTGAGCAAGATTGATTTGGAGAACACCATCGTGGTCATCACCTCGGATCATGGTGAAGAGTTTAACGATAATCGCATG AACTATTGGGGGCATTCTGGCAATTACAGCCAAGCGCAAATCCACGTGCCGTTGTACATCTATGCACCTGGCCAAACCGC CAAGACTTACGATTATCGCACCACCCACTTTGATGTGGTGCCCACGCTGATGGACATGCTCTTTGATAATAAAATTAATA CCGCAGATTTCAGCGTCGGCGACAACTTGTTCGACGCGACCAAATCTCGAGATTGGTTTATCGCGGGGAGCTACTACAAC TATGCACTCGTCGGCCAAGAGATGATGATGGTGGTTAACCCCGCAGGGAACTCAAAACAGCTCAACAACCAATTGAAGCT GGTTAAAGACCACAAAGTACCTGTCAATGTGATTCAGCAATCACTGGAACTGATGTCGCGCTTCTATCACAAGGGCTAA
Upstream 100 bases:
>100_bases TACACTTCCGTACCAAATGTGACACGCTTCACGTCTTTAAAGTTAAAAAACACTGTTTTATACTTCCGCTCGTTTTTATC AAAATTATTTATAACTCGCT
Downstream 100 bases:
>100_bases CGACCGTTTTTCTCGCCGTTAAACAAAAACGCCTCGCATGATGAACTGCGAGGCGTTTTTTCTCTTCGACACCATTCGAT ACTAGGCAAATTTGCCAAGC
Product: hydrolase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 612; Mature: 611
Protein sequence:
>612_residues MGFKKMLRKLSSNSAWLIAFFACFTVYLSIACYPFVLSSDPSQDLSGLQSFYLIATQLGWLGLLSLPIMLLSLPLTLLPT RLFKGIVITLAALLVIALKIDITVFQHYKFHINGLLIRMFFDGGNEVFNISWLSWLIFISEIAVMFIGLAIAVWLSKLLA NSKLKFAFVALWFVMLLSSQMVHAYKNALYDNEVSQFTNNWPLYYPLTARSFMYKNGFVDEKIAAQNRVELKNVEGSQLD YPLEPVSLPTQTKQPNVLFILVDAWRHSDATAEIMPNVSQFAQKTANFSQHMSGGNSTQAGMFSLFYSLPATYWDSFYAS QTAPVFMDSLQSAGYRMGIFGSASLTSPPLSRTVFKNVKDLRLKTPGTTQVERDARITEDFIAFEAQPSDQPYFGFLFYD SAHGTEFPEPEGAKFTPYWERVDHILLNNDFDAELYHNRYKNSLYYIDGLIGKVLSKIDLENTIVVITSDHGEEFNDNRM NYWGHSGNYSQAQIHVPLYIYAPGQTAKTYDYRTTHFDVVPTLMDMLFDNKINTADFSVGDNLFDATKSRDWFIAGSYYN YALVGQEMMMVVNPAGNSKQLNNQLKLVKDHKVPVNVIQQSLELMSRFYHKG
Sequences:
>Translated_612_residues MGFKKMLRKLSSNSAWLIAFFACFTVYLSIACYPFVLSSDPSQDLSGLQSFYLIATQLGWLGLLSLPIMLLSLPLTLLPT RLFKGIVITLAALLVIALKIDITVFQHYKFHINGLLIRMFFDGGNEVFNISWLSWLIFISEIAVMFIGLAIAVWLSKLLA NSKLKFAFVALWFVMLLSSQMVHAYKNALYDNEVSQFTNNWPLYYPLTARSFMYKNGFVDEKIAAQNRVELKNVEGSQLD YPLEPVSLPTQTKQPNVLFILVDAWRHSDATAEIMPNVSQFAQKTANFSQHMSGGNSTQAGMFSLFYSLPATYWDSFYAS QTAPVFMDSLQSAGYRMGIFGSASLTSPPLSRTVFKNVKDLRLKTPGTTQVERDARITEDFIAFEAQPSDQPYFGFLFYD SAHGTEFPEPEGAKFTPYWERVDHILLNNDFDAELYHNRYKNSLYYIDGLIGKVLSKIDLENTIVVITSDHGEEFNDNRM NYWGHSGNYSQAQIHVPLYIYAPGQTAKTYDYRTTHFDVVPTLMDMLFDNKINTADFSVGDNLFDATKSRDWFIAGSYYN YALVGQEMMMVVNPAGNSKQLNNQLKLVKDHKVPVNVIQQSLELMSRFYHKG >Mature_611_residues GFKKMLRKLSSNSAWLIAFFACFTVYLSIACYPFVLSSDPSQDLSGLQSFYLIATQLGWLGLLSLPIMLLSLPLTLLPTR LFKGIVITLAALLVIALKIDITVFQHYKFHINGLLIRMFFDGGNEVFNISWLSWLIFISEIAVMFIGLAIAVWLSKLLAN SKLKFAFVALWFVMLLSSQMVHAYKNALYDNEVSQFTNNWPLYYPLTARSFMYKNGFVDEKIAAQNRVELKNVEGSQLDY PLEPVSLPTQTKQPNVLFILVDAWRHSDATAEIMPNVSQFAQKTANFSQHMSGGNSTQAGMFSLFYSLPATYWDSFYASQ TAPVFMDSLQSAGYRMGIFGSASLTSPPLSRTVFKNVKDLRLKTPGTTQVERDARITEDFIAFEAQPSDQPYFGFLFYDS AHGTEFPEPEGAKFTPYWERVDHILLNNDFDAELYHNRYKNSLYYIDGLIGKVLSKIDLENTIVVITSDHGEEFNDNRMN YWGHSGNYSQAQIHVPLYIYAPGQTAKTYDYRTTHFDVVPTLMDMLFDNKINTADFSVGDNLFDATKSRDWFIAGSYYNY ALVGQEMMMVVNPAGNSKQLNNQLKLVKDHKVPVNVIQQSLELMSRFYHKG
Specific function: Unknown
COG id: COG3083
COG function: function code R; Predicted hydrolase of alkaline phosphatase superfamily
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: To E.coli yejM [H]
Homologues:
Organism=Escherichia coli, GI1788515, Length=617, Percent_Identity=25.2836304700162, Blast_Score=196, Evalue=5e-51,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR017849 - InterPro: IPR017850 - InterPro: IPR012159 - InterPro: IPR000917 [H]
Pfam domain/function: PF00884 Sulfatase [H]
EC number: NA
Molecular weight: Translated: 69586; Mature: 69454
Theoretical pI: Translated: 6.63; Mature: 6.63
Prosite motif: PS00013 PROKAR_LIPOPROTEIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 3.3 %Met (Translated Protein) 3.6 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 3.1 %Met (Mature Protein) 3.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MGFKKMLRKLSSNSAWLIAFFACFTVYLSIACYPFVLSSDPSQDLSGLQSFYLIATQLGW CCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHEEECCCCCHHHHHHHHHHHHHHHHHH LGLLSLPIMLLSLPLTLLPTRLFKGIVITLAALLVIALKIDITVFQHYKFHINGLLIRMF HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEECEEEEEEE FDGGNEVFNISWLSWLIFISEIAVMFIGLAIAVWLSKLLANSKLKFAFVALWFVMLLSSQ ECCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH MVHAYKNALYDNEVSQFTNNWPLYYPLTARSFMYKNGFVDEKIAAQNRVELKNVEGSQLD HHHHHHHHHCCCHHHHHCCCCCEEEEECHHHHHHCCCCCCHHHHHCCCCEEECCCCCCCC YPLEPVSLPTQTKQPNVLFILVDAWRHSDATAEIMPNVSQFAQKTANFSQHMSGGNSTQA CCCCCCCCCCCCCCCCEEEEEEECCCCCCCHHHHCCCHHHHHHHHHHHHHHCCCCCCCHH GMFSLFYSLPATYWDSFYASQTAPVFMDSLQSAGYRMGIFGSASLTSPPLSRTVFKNVKD HHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCEEEEEEECCCCCCCCCHHHHHCCHHH LRLKTPGTTQVERDARITEDFIAFEAQPSDQPYFGFLFYDSAHGTEFPEPEGAKFTPYWE CEECCCCCCCCCCCCHHHHHHHEEECCCCCCCEEEEEEEECCCCCCCCCCCCCCCCHHHH RVDHILLNNDFDAELYHNRYKNSLYYIDGLIGKVLSKIDLENTIVVITSDHGEEFNDNRM HHCEEEECCCCCHHHHHHHHCCCEEEHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCC NYWGHSGNYSQAQIHVPLYIYAPGQTAKTYDYRTTHFDVVPTLMDMLFDNKINTADFSVG EECCCCCCCCEEEEEEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCC DNLFDATKSRDWFIAGSYYNYALVGQEMMMVVNPAGNSKQLNNQLKLVKDHKVPVNVIQQ CCHHHHCCCCCEEEEECCCCEEEECCEEEEEECCCCCCHHHCCHHHEEECCCCCHHHHHH SLELMSRFYHKG HHHHHHHHHCCC >Mature Secondary Structure GFKKMLRKLSSNSAWLIAFFACFTVYLSIACYPFVLSSDPSQDLSGLQSFYLIATQLGW CHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHEEECCCCCHHHHHHHHHHHHHHHHHH LGLLSLPIMLLSLPLTLLPTRLFKGIVITLAALLVIALKIDITVFQHYKFHINGLLIRMF HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEECEEEEEEE FDGGNEVFNISWLSWLIFISEIAVMFIGLAIAVWLSKLLANSKLKFAFVALWFVMLLSSQ ECCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH MVHAYKNALYDNEVSQFTNNWPLYYPLTARSFMYKNGFVDEKIAAQNRVELKNVEGSQLD HHHHHHHHHCCCHHHHHCCCCCEEEEECHHHHHHCCCCCCHHHHHCCCCEEECCCCCCCC YPLEPVSLPTQTKQPNVLFILVDAWRHSDATAEIMPNVSQFAQKTANFSQHMSGGNSTQA CCCCCCCCCCCCCCCCEEEEEEECCCCCCCHHHHCCCHHHHHHHHHHHHHHCCCCCCCHH GMFSLFYSLPATYWDSFYASQTAPVFMDSLQSAGYRMGIFGSASLTSPPLSRTVFKNVKD HHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCEEEEEEECCCCCCCCCHHHHHCCHHH LRLKTPGTTQVERDARITEDFIAFEAQPSDQPYFGFLFYDSAHGTEFPEPEGAKFTPYWE CEECCCCCCCCCCCCHHHHHHHEEECCCCCCCEEEEEEEECCCCCCCCCCCCCCCCHHHH RVDHILLNNDFDAELYHNRYKNSLYYIDGLIGKVLSKIDLENTIVVITSDHGEEFNDNRM HHCEEEECCCCCHHHHHHHHCCCEEEHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCC NYWGHSGNYSQAQIHVPLYIYAPGQTAKTYDYRTTHFDVVPTLMDMLFDNKINTADFSVG EECCCCCCCCEEEEEEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCC DNLFDATKSRDWFIAGSYYNYALVGQEMMMVVNPAGNSKQLNNQLKLVKDHKVPVNVIQQ CCHHHHCCCCCEEEEECCCCEEEECCEEEEEECCCCCCHHHCCHHHEEECCCCCHHHHHH SLELMSRFYHKG HHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 7542800 [H]