Definition | Vibrio vulnificus YJ016 chromosome I, complete sequence. |
---|---|
Accession | NC_005139 |
Length | 3,354,505 |
Click here to switch to the map view.
The map label for this gene is 37680477
Identifier: 37680477
GI number: 37680477
Start: 2309412
End: 2310917
Strand: Direct
Name: 37680477
Synonym: VV2293
Alternate gene names: NA
Gene position: 2309412-2310917 (Clockwise)
Preceding gene: 37680476
Following gene: 37680478
Centisome position: 68.85
GC content: 48.74
Gene sequence:
>1506_bases ATGACTTCCCGAGTTCCCTTTTATCTTTCTATCATCCTGCTGATTGTCGCAGGGATAACACTCAGCGTGTTTCGCCATCA AACCTATGGCGTGCCATGGACACCCGGCGAAAGCCGCCAGATCTGGGATATTGAAGCGCGCATTGAATTTAACGCCAGCG GTCAAGAGGTGAAAGCCTCACTTGCAGCACCTCATACTCAAAATGGCTTCACCTTGATCAATGAGACAGCATCGTCTCCA GGCTATGGCGTCTCTTACGTTAATACCGCATCGGGTCGTCGCGCTGAGTGGTCTATTCGACAAGCAAGTGGCCCGCAAAC CATTTACTACAAAACGCAGTTTCTAGTGGACCCACAGGCAAAAGTGACCGTACAACCGCCCACTGAGCCGATCAACAAAC CGACCTACTCTAATCCGGAACAAACCGCCGCGAAAGCCTTAATTGACCGTGCGATGGCTCGCTCATCTGATAACATCACG TTCACGCGCGAGTTGATCAAAACACTCAACGATCCCGATAGCCAAAACGCAGCGCTACTGCTTAACAACGCTGACCGTGC CACCACCATCTACAAACTGCTTTCGACTGCCGATGTTCAAAGCAAAATGGTCGGAGTCATCGCTTTGGAAGATGGCCGTC GTCGCCAAACTATTGAATCAATGATTCAAGTGTGGGATGGACAATCTTGGGTTCTATTCTCGCCAAATTCAGAGCAACAC GCTGACCAAGGCAACTTGCTGGTATGGGATGATTCTAACGTATCGCTACTGGATTTGGTCGGTGGTCAAAATAGCCAAGT GCATTTCTCAATGATTGCGCAAGACATTTCACCGCAGGCGGCAACCAACAACAAAGTGGAAGCCGATGGCCTACTGAACC TCTCGATTCACAGCTTACCTCTCGAAGAACAAGCGATGTTTAAGACCATCATGTTGGTGCCGATTGGCGCACTCATTGTG GTGTTCTTGCGCGTCATCATTGGTTTGAAAACATCCGGCACCTTTATGCCCGTACTGATTGCCGTGGCGTTTGTACAGAC GCAACTGGTTACGGGGATTGTCGGTTTCTTATTGATTGTGGGTACAGGTTTGATCATTCGTAGCTACCTCTCCAAGCTGA ACTTGCTGTTGGTTGCGCGGATATCTGCGGTCATTATTACCGTTATTCTGATTATTTCCGTGTTCACCGTCGTGGCATTC AAGATTGGTCTAACCGAAGGCCTTTCTATCACCTTCTTCCCAATGATCATCTTGTCATGGACCATCGAACGTATGTCCAT CTTGTGGGAAGAAGAAGGCGCGAAAGAGGTGGTACTGCAAGGCGGTGGTTCATTATTTACCGCAGTATTGGTTTACCTTG GCATGACTAACCCATACATCCAGCACCTAACCTTTAACTTCATTGGTCTTCAGCTTGTGGTACTGGCGGCAATTTTGCTA TTGGGTACTTACACTGGATACCGCATTACAGAACTGCGCCGCTTTAAGCCATTGGTGGAGGATTAA
Upstream 100 bases:
>100_bases CATCCCGTTCTTTTAGGTCGTGAGTTTATTCGCGATATTGCTCTTGTTGACGTTAGTCGCAGTTACATTCAAACCGGACA AAAGAAAAAATAGGTAGGCT
Downstream 100 bases:
>100_bases TCTATGTTCTCCTTTTTGTCTAAGTACACATCACCGATGAAGCTGCGACGCAAAGGGATCATGGGGATGAATAAGCGTAA CCACGCTTATATTGGTCGCT
Product: gonadoliberin III-related protein
Products: NA
Alternate protein names: Membrane-Associated HD Superfamily Hydrolase; GoNADoliberin III-Like Protein; Transglutaminase-Like; Transglutaminase Domain-Containing Protein
Number of amino acids: Translated: 501; Mature: 500
Protein sequence:
>501_residues MTSRVPFYLSIILLIVAGITLSVFRHQTYGVPWTPGESRQIWDIEARIEFNASGQEVKASLAAPHTQNGFTLINETASSP GYGVSYVNTASGRRAEWSIRQASGPQTIYYKTQFLVDPQAKVTVQPPTEPINKPTYSNPEQTAAKALIDRAMARSSDNIT FTRELIKTLNDPDSQNAALLLNNADRATTIYKLLSTADVQSKMVGVIALEDGRRRQTIESMIQVWDGQSWVLFSPNSEQH ADQGNLLVWDDSNVSLLDLVGGQNSQVHFSMIAQDISPQAATNNKVEADGLLNLSIHSLPLEEQAMFKTIMLVPIGALIV VFLRVIIGLKTSGTFMPVLIAVAFVQTQLVTGIVGFLLIVGTGLIIRSYLSKLNLLLVARISAVIITVILIISVFTVVAF KIGLTEGLSITFFPMIILSWTIERMSILWEEEGAKEVVLQGGGSLFTAVLVYLGMTNPYIQHLTFNFIGLQLVVLAAILL LGTYTGYRITELRRFKPLVED
Sequences:
>Translated_501_residues MTSRVPFYLSIILLIVAGITLSVFRHQTYGVPWTPGESRQIWDIEARIEFNASGQEVKASLAAPHTQNGFTLINETASSP GYGVSYVNTASGRRAEWSIRQASGPQTIYYKTQFLVDPQAKVTVQPPTEPINKPTYSNPEQTAAKALIDRAMARSSDNIT FTRELIKTLNDPDSQNAALLLNNADRATTIYKLLSTADVQSKMVGVIALEDGRRRQTIESMIQVWDGQSWVLFSPNSEQH ADQGNLLVWDDSNVSLLDLVGGQNSQVHFSMIAQDISPQAATNNKVEADGLLNLSIHSLPLEEQAMFKTIMLVPIGALIV VFLRVIIGLKTSGTFMPVLIAVAFVQTQLVTGIVGFLLIVGTGLIIRSYLSKLNLLLVARISAVIITVILIISVFTVVAF KIGLTEGLSITFFPMIILSWTIERMSILWEEEGAKEVVLQGGGSLFTAVLVYLGMTNPYIQHLTFNFIGLQLVVLAAILL LGTYTGYRITELRRFKPLVED >Mature_500_residues TSRVPFYLSIILLIVAGITLSVFRHQTYGVPWTPGESRQIWDIEARIEFNASGQEVKASLAAPHTQNGFTLINETASSPG YGVSYVNTASGRRAEWSIRQASGPQTIYYKTQFLVDPQAKVTVQPPTEPINKPTYSNPEQTAAKALIDRAMARSSDNITF TRELIKTLNDPDSQNAALLLNNADRATTIYKLLSTADVQSKMVGVIALEDGRRRQTIESMIQVWDGQSWVLFSPNSEQHA DQGNLLVWDDSNVSLLDLVGGQNSQVHFSMIAQDISPQAATNNKVEADGLLNLSIHSLPLEEQAMFKTIMLVPIGALIVV FLRVIIGLKTSGTFMPVLIAVAFVQTQLVTGIVGFLLIVGTGLIIRSYLSKLNLLLVARISAVIITVILIISVFTVVAFK IGLTEGLSITFFPMIILSWTIERMSILWEEEGAKEVVLQGGGSLFTAVLVYLGMTNPYIQHLTFNFIGLQLVVLAAILLL GTYTGYRITELRRFKPLVED
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 55104; Mature: 54973
Theoretical pI: Translated: 6.27; Mature: 6.27
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 2.2 %Met (Translated Protein) 2.2 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 2.0 %Met (Mature Protein) 2.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTSRVPFYLSIILLIVAGITLSVFRHQTYGVPWTPGESRQIWDIEARIEFNASGQEVKAS CCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEEEEEEECCCCHHHHHH LAAPHTQNGFTLINETASSPGYGVSYVNTASGRRAEWSIRQASGPQTIYYKTQFLVDPQA HCCCCCCCCCEEEECCCCCCCCCEEEEECCCCCCCEEEEECCCCCEEEEEEEEEEECCCC KVTVQPPTEPINKPTYSNPEQTAAKALIDRAMARSSDNITFTRELIKTLNDPDSQNAALL EEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCEEE LNNADRATTIYKLLSTADVQSKMVGVIALEDGRRRQTIESMIQVWDGQSWVLFSPNSEQH EECCCHHHHHHHHHHHHHHHHHEEEEEEECCCCHHHHHHHHHHHHCCCEEEEECCCCCCC ADQGNLLVWDDSNVSLLDLVGGQNSQVHFSMIAQDISPQAATNNKVEADGLLNLSIHSLP CCCCCEEEECCCCCEEEEEECCCCCEEEHHHHHHHCCCCCCCCCCCCCCCEEEEEEECCC LEEQAMFKTIMLVPIGALIVVFLRVIIGLKTSGTFMPVLIAVAFVQTQLVTGIVGFLLIV CHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH GTGLIIRSYLSKLNLLLVARISAVIITVILIISVFTVVAFKIGLTEGLSITFFPMIILSW HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHH TIERMSILWEEEGAKEVVLQGGGSLFTAVLVYLGMTNPYIQHLTFNFIGLQLVVLAAILL HHHHHHHHHHCCCCCEEEEECCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH LGTYTGYRITELRRFKPLVED HHCCCCCCHHHHHHHCCCCCC >Mature Secondary Structure TSRVPFYLSIILLIVAGITLSVFRHQTYGVPWTPGESRQIWDIEARIEFNASGQEVKAS CCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEEEEEEECCCCHHHHHH LAAPHTQNGFTLINETASSPGYGVSYVNTASGRRAEWSIRQASGPQTIYYKTQFLVDPQA HCCCCCCCCCEEEECCCCCCCCCEEEEECCCCCCCEEEEECCCCCEEEEEEEEEEECCCC KVTVQPPTEPINKPTYSNPEQTAAKALIDRAMARSSDNITFTRELIKTLNDPDSQNAALL EEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCEEE LNNADRATTIYKLLSTADVQSKMVGVIALEDGRRRQTIESMIQVWDGQSWVLFSPNSEQH EECCCHHHHHHHHHHHHHHHHHEEEEEEECCCCHHHHHHHHHHHHCCCEEEEECCCCCCC ADQGNLLVWDDSNVSLLDLVGGQNSQVHFSMIAQDISPQAATNNKVEADGLLNLSIHSLP CCCCCEEEECCCCCEEEEEECCCCCEEEHHHHHHHCCCCCCCCCCCCCCCEEEEEEECCC LEEQAMFKTIMLVPIGALIVVFLRVIIGLKTSGTFMPVLIAVAFVQTQLVTGIVGFLLIV CHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH GTGLIIRSYLSKLNLLLVARISAVIITVILIISVFTVVAFKIGLTEGLSITFFPMIILSW HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHH TIERMSILWEEEGAKEVVLQGGGSLFTAVLVYLGMTNPYIQHLTFNFIGLQLVVLAAILL HHHHHHHHHHCCCCCEEEEECCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH LGTYTGYRITELRRFKPLVED HHCCCCCCHHHHHHHCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA