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The map label for this gene is rpfG [H]

Identifier: 37680279

GI number: 37680279

Start: 2102228

End: 2103757

Strand: Direct

Name: rpfG [H]

Synonym: VV2095

Alternate gene names: 37680279

Gene position: 2102228-2103757 (Clockwise)

Preceding gene: 37680278

Following gene: 37680280

Centisome position: 62.67

GC content: 46.6

Gene sequence:

>1530_bases
ATGCTGAAGGTTCAATCAAGCAGAGAATTGACCAAGTCGCATTTGCTGCGAATGATAATAACAAGGGCTTACACAATGTC
TCATTACAACGCGCCATTAACTTTCAAACTCTATGCGCTTGCTGCCATCGTTTTTGGTACTTATGGCGGTCGCGTTTGTC
CTATGCTGGCAACGCTGTCACCGCTAGAAGTGCTGGCGCACGTTTCTATTACTTTTCTTGCTGTCTTTGCAGTACGACAC
TTTCTCTTTGCTCAACATCGATGGGTTCGCGAGCAAAAACACGCGCAGCTCGATACCGTGTTGTTTTTTATCGGCAGCTT
ACCTCTTGCCTACTACTACAACAGCCAATATGACTTCACCATTGATAGCAATTTAAAAGTGCTGTTTGGTATGACGTTGT
TTGGCTTTTTTACTGGATTGATCCTGCAACTCAAAGCCAAATTACTTCGCTTTGAGCTTCTTGAGGAAAATTCCACCCGC
CAAGATACACTGAGTGGCGAACGACAATCGATTATCAAACAGCTCATTTTGATGATGACGCTGCTTATCATCGCGTTGAC
CACCATGCTGACCATGGTGGCGGTGAAAGACATTTTTTGGCTGGAGCACAACCCAGAGAGATTACTCGATGGCAGTGGCA
AGATCAGCATCATTAAAGAGTTCATCTATTTAGGCGTAGTACTAGGTGGGTATGTCCTAGCCATTCTTCTCTTGTGGTCG
AAACTCATGAAAAAGATTTTGTTGCGACAAGAGCATTCCCTACAAGAAGTGACCAATGGTGCAATAGGATGCCGCCTTGC
CGTTTTCGAGCATGATGAATTGGGTTCAATGGCGGCGCTCACCAACAAAATGTTGGATAGCTTACAAGCGTCGCAAGATG
AGGTAAAAACCACTCGAGATGTGGCCATCGTCAGTCTCGCTGCGCTCGCCGAATCGCGCGACAACGAAACAGGTGCCCAC
ATTATTCGCACGCAGGAATACGTTAAGGCATTGGCAGAGCATTTAGCCCAAGACCCACAACACGTTTCTCTGCTGACACC
AACTTACATCGATTTACTCTATAAATCCGCCCCCCTTCACGATGTGGGAAAAGTCGGTATCCCAGACAGTGTACTGCTCA
AGCCAGGCAAATTAACTGACGAAGAATTCGACATCATGAAAGGTCACCCACAAATTGGCGCTGATGCCCTCTCGATTGCT
GAAAAACGCATGGGCTCCAGTTCTTTTTTACGAGTGGCCAAAGAGATCTCCCTCTCTCACCATGAAAAATGGGACGGTTC
TGGTTATCCCAATCAACTGGCCGGCGAAGCGATTCCATTGTCTGGGCGATTAATGGCGCTCGCCGACGTCTACGATGCGC
TGATTTCTAAGCGTGTATACAAACCGGCATTTAGTCATGATAAAGCCAAAGAGATCATTCTTGATGGCAAAGGAAAGCAT
TTTGACCCTCAAGTGGTCGACGCCTTTTTAGCGGTAGAAGCACAGTTTTGTCGTATTGCAGCACAATATCAAGACTCCGC
AACTCATTAG

Upstream 100 bases:

>100_bases
AACAAGAATGTTTTTGCTTGCTTGAATATTCCAAGCTGATGCGAGGCACTCTTCTACACTAAAGTGAGAAGAAGGTTCTT
TTCTTAGAACAATCAGCGTA

Downstream 100 bases:

>100_bases
ACCTCTAACATCATGTTAACACCCCAATTTCCCCCGCGGTTTTGGGGTGTTTTATTAGCAAAACTCGCAATTCATTAGCA
CTTCTGTTTCAAATCAAATT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 509; Mature: 509

Protein sequence:

>509_residues
MLKVQSSRELTKSHLLRMIITRAYTMSHYNAPLTFKLYALAAIVFGTYGGRVCPMLATLSPLEVLAHVSITFLAVFAVRH
FLFAQHRWVREQKHAQLDTVLFFIGSLPLAYYYNSQYDFTIDSNLKVLFGMTLFGFFTGLILQLKAKLLRFELLEENSTR
QDTLSGERQSIIKQLILMMTLLIIALTTMLTMVAVKDIFWLEHNPERLLDGSGKISIIKEFIYLGVVLGGYVLAILLLWS
KLMKKILLRQEHSLQEVTNGAIGCRLAVFEHDELGSMAALTNKMLDSLQASQDEVKTTRDVAIVSLAALAESRDNETGAH
IIRTQEYVKALAEHLAQDPQHVSLLTPTYIDLLYKSAPLHDVGKVGIPDSVLLKPGKLTDEEFDIMKGHPQIGADALSIA
EKRMGSSSFLRVAKEISLSHHEKWDGSGYPNQLAGEAIPLSGRLMALADVYDALISKRVYKPAFSHDKAKEIILDGKGKH
FDPQVVDAFLAVEAQFCRIAAQYQDSATH

Sequences:

>Translated_509_residues
MLKVQSSRELTKSHLLRMIITRAYTMSHYNAPLTFKLYALAAIVFGTYGGRVCPMLATLSPLEVLAHVSITFLAVFAVRH
FLFAQHRWVREQKHAQLDTVLFFIGSLPLAYYYNSQYDFTIDSNLKVLFGMTLFGFFTGLILQLKAKLLRFELLEENSTR
QDTLSGERQSIIKQLILMMTLLIIALTTMLTMVAVKDIFWLEHNPERLLDGSGKISIIKEFIYLGVVLGGYVLAILLLWS
KLMKKILLRQEHSLQEVTNGAIGCRLAVFEHDELGSMAALTNKMLDSLQASQDEVKTTRDVAIVSLAALAESRDNETGAH
IIRTQEYVKALAEHLAQDPQHVSLLTPTYIDLLYKSAPLHDVGKVGIPDSVLLKPGKLTDEEFDIMKGHPQIGADALSIA
EKRMGSSSFLRVAKEISLSHHEKWDGSGYPNQLAGEAIPLSGRLMALADVYDALISKRVYKPAFSHDKAKEIILDGKGKH
FDPQVVDAFLAVEAQFCRIAAQYQDSATH
>Mature_509_residues
MLKVQSSRELTKSHLLRMIITRAYTMSHYNAPLTFKLYALAAIVFGTYGGRVCPMLATLSPLEVLAHVSITFLAVFAVRH
FLFAQHRWVREQKHAQLDTVLFFIGSLPLAYYYNSQYDFTIDSNLKVLFGMTLFGFFTGLILQLKAKLLRFELLEENSTR
QDTLSGERQSIIKQLILMMTLLIIALTTMLTMVAVKDIFWLEHNPERLLDGSGKISIIKEFIYLGVVLGGYVLAILLLWS
KLMKKILLRQEHSLQEVTNGAIGCRLAVFEHDELGSMAALTNKMLDSLQASQDEVKTTRDVAIVSLAALAESRDNETGAH
IIRTQEYVKALAEHLAQDPQHVSLLTPTYIDLLYKSAPLHDVGKVGIPDSVLLKPGKLTDEEFDIMKGHPQIGADALSIA
EKRMGSSSFLRVAKEISLSHHEKWDGSGYPNQLAGEAIPLSGRLMALADVYDALISKRVYKPAFSHDKAKEIILDGKGKH
FDPQVVDAFLAVEAQFCRIAAQYQDSATH

Specific function: Positively regulates the synthesis of extracellular enzymes and extracellular polysaccharides. The cell-cell signaling system encoded by rpf genes is required for full virulence and is implicated in regulation of the formation and dispersal of biofilms [H

COG id: COG2206

COG function: function code T; HD-GYP domain

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 response regulatory domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011006
- InterPro:   IPR003607
- InterPro:   IPR001789 [H]

Pfam domain/function: PF00072 Response_reg [H]

EC number: NA

Molecular weight: Translated: 56907; Mature: 56907

Theoretical pI: Translated: 7.58; Mature: 7.58

Prosite motif: PS50885 HAMP

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLKVQSSRELTKSHLLRMIITRAYTMSHYNAPLTFKLYALAAIVFGTYGGRVCPMLATLS
CCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHCC
PLEVLAHVSITFLAVFAVRHFLFAQHRWVREQKHAQLDTVLFFIGSLPLAYYYNSQYDFT
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCEEEEE
IDSNLKVLFGMTLFGFFTGLILQLKAKLLRFELLEENSTRQDTLSGERQSIIKQLILMMT
ECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHCCCHHHHHHHHHHHHHH
LLIIALTTMLTMVAVKDIFWLEHNPERLLDGSGKISIIKEFIYLGVVLGGYVLAILLLWS
HHHHHHHHHHHHHHHHHHHHHCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
KLMKKILLRQEHSLQEVTNGAIGCRLAVFEHDELGSMAALTNKMLDSLQASQDEVKTTRD
HHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHCCHHHHHHHHH
VAIVSLAALAESRDNETGAHIIRTQEYVKALAEHLAQDPQHVSLLTPTYIDLLYKSAPLH
HHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEECCHHHHHHHHCCCCCC
DVGKVGIPDSVLLKPGKLTDEEFDIMKGHPQIGADALSIAEKRMGSSSFLRVAKEISLSH
CCCCCCCCCCCEECCCCCCCCHHHHHCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHH
HEKWDGSGYPNQLAGEAIPLSGRLMALADVYDALISKRVYKPAFSHDKAKEIILDGKGKH
CCCCCCCCCCCHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHEEECCCCCC
FDPQVVDAFLAVEAQFCRIAAQYQDSATH
CCHHHHHHHHHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure
MLKVQSSRELTKSHLLRMIITRAYTMSHYNAPLTFKLYALAAIVFGTYGGRVCPMLATLS
CCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHCC
PLEVLAHVSITFLAVFAVRHFLFAQHRWVREQKHAQLDTVLFFIGSLPLAYYYNSQYDFT
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCEEEEE
IDSNLKVLFGMTLFGFFTGLILQLKAKLLRFELLEENSTRQDTLSGERQSIIKQLILMMT
ECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHCCCHHHHHHHHHHHHHH
LLIIALTTMLTMVAVKDIFWLEHNPERLLDGSGKISIIKEFIYLGVVLGGYVLAILLLWS
HHHHHHHHHHHHHHHHHHHHHCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
KLMKKILLRQEHSLQEVTNGAIGCRLAVFEHDELGSMAALTNKMLDSLQASQDEVKTTRD
HHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHCCHHHHHHHHH
VAIVSLAALAESRDNETGAHIIRTQEYVKALAEHLAQDPQHVSLLTPTYIDLLYKSAPLH
HHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEECCHHHHHHHHCCCCCC
DVGKVGIPDSVLLKPGKLTDEEFDIMKGHPQIGADALSIAEKRMGSSSFLRVAKEISLSH
CCCCCCCCCCCEECCCCCCCCHHHHHCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHH
HEKWDGSGYPNQLAGEAIPLSGRLMALADVYDALISKRVYKPAFSHDKAKEIILDGKGKH
CCCCCCCCCCCHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHEEECCCCCC
FDPQVVDAFLAVEAQFCRIAAQYQDSATH
CCHHHHHHHHHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11123673 [H]