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The map label for this gene is petB [H]

Identifier: 37521439

GI number: 37521439

Start: 1990855

End: 1991508

Strand: Reverse

Name: petB [H]

Synonym: gvip258

Alternate gene names: 37521439

Gene position: 1991508-1990855 (Counterclockwise)

Preceding gene: 37521441

Following gene: 37521438

Centisome position: 42.75

GC content: 56.57

Gene sequence:

>654_bases
ATGAAATCTTTGGTTACATTGCGCATCCCTTCGTTACAATTGGGGGGTAGCGCGCTGCAGGATGGACCGATGGAGGTCAC
CAACCGCTCTGCCCAGGAGCGTTTCAAGCAATGGCTGCCCTATTTGTCTTCGGCGACGGTCACCTTTTTGGTCCTCGCGT
TGCTCACGGGGGTCTTGCTTGGGGCCAACTTTGTGCCTTCGCTCGGGGCCTACGATTCGACCCGGCAGATTACTTACCAG
ACCAGCTTTGGTTGGGCGGTGCGCGGCTTGCACTGGTGGGCGAGTTCTTTGACGCTGGTGTGCAGTCTGGCGTTTACCGC
TTTGGCCTACTGGTACGGTTATTTTCGCGGTCCGGCCAAATGGATGTGGTGGACGGGTCTGGTGATGGGCCTGATGCTGC
TCGGCGCGAATGTGACCGGTTATTACTTGCCTTTGGATCAGAACGCTTACTGGCGCTTGATGATCGAGGCGAATCTGCTC
GCCGATGTGCCGGTTCTGGGGGCGGCGGTCAAGTATTTTCTGCTCAACGGTTCGGGGGTGAGCGACGCGAGCATCGCCCG
AATCCACTGGTTGCACAGCGTCGTGATGCCTTTGTTCACCGTACTGGCTTTGTTCTCCCATGTATACGCAGCAAGAAAAG
CAAAACTCTTCTAA

Upstream 100 bases:

>100_bases
CCCCGCCCACTGAATCCAGCCCGCTTTTATCTTGGCAAACTTCCAGGCGACCCGACTCGGGCTTCAAAATGAACCTACCA
GAAGCGAGAGCTCAAAAGCA

Downstream 100 bases:

>100_bases
AACCTTGCCCGCCGTTGGTCGCTCGCTCGATACGCGGGTCTTCGATATTGCTTTGGTAGTCATTGCATCGATCGGGGTGG
CGCTAGTACTCACGGTTCTC

Product: cytochrome b6

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 217; Mature: 217

Protein sequence:

>217_residues
MKSLVTLRIPSLQLGGSALQDGPMEVTNRSAQERFKQWLPYLSSATVTFLVLALLTGVLLGANFVPSLGAYDSTRQITYQ
TSFGWAVRGLHWWASSLTLVCSLAFTALAYWYGYFRGPAKWMWWTGLVMGLMLLGANVTGYYLPLDQNAYWRLMIEANLL
ADVPVLGAAVKYFLLNGSGVSDASIARIHWLHSVVMPLFTVLALFSHVYAARKAKLF

Sequences:

>Translated_217_residues
MKSLVTLRIPSLQLGGSALQDGPMEVTNRSAQERFKQWLPYLSSATVTFLVLALLTGVLLGANFVPSLGAYDSTRQITYQ
TSFGWAVRGLHWWASSLTLVCSLAFTALAYWYGYFRGPAKWMWWTGLVMGLMLLGANVTGYYLPLDQNAYWRLMIEANLL
ADVPVLGAAVKYFLLNGSGVSDASIARIHWLHSVVMPLFTVLALFSHVYAARKAKLF
>Mature_217_residues
MKSLVTLRIPSLQLGGSALQDGPMEVTNRSAQERFKQWLPYLSSATVTFLVLALLTGVLLGANFVPSLGAYDSTRQITYQ
TSFGWAVRGLHWWASSLTLVCSLAFTALAYWYGYFRGPAKWMWWTGLVMGLMLLGANVTGYYLPLDQNAYWRLMIEANLL
ADVPVLGAAVKYFLLNGSGVSDASIARIHWLHSVVMPLFTVLALFSHVYAARKAKLF

Specific function: Component of the cytochrome b6-f complex, which mediates electron transfer between photosystem II (PSII) and photosystem I (PSI), cyclic electron flow around PSI, and state transitions [H]

COG id: COG1290

COG function: function code C; Cytochrome b subunit of the bc complex

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the cytochrome b family. PetB subfamily [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR016175
- InterPro:   IPR005797
- InterPro:   IPR016174 [H]

Pfam domain/function: PF00033 Cytochrom_B_N [H]

EC number: NA

Molecular weight: Translated: 24108; Mature: 24108

Theoretical pI: Translated: 9.92; Mature: 9.92

Prosite motif: PS51002 CYTB_NTER

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKSLVTLRIPSLQLGGSALQDGPMEVTNRSAQERFKQWLPYLSSATVTFLVLALLTGVLL
CCCEEEEECCCEECCCCCCCCCCHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
GANFVPSLGAYDSTRQITYQTSFGWAVRGLHWWASSLTLVCSLAFTALAYWYGYFRGPAK
CCCCCCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHH
WMWWTGLVMGLMLLGANVTGYYLPLDQNAYWRLMIEANLLADVPVLGAAVKYFLLNGSGV
HHHHHHHHHHHHHHCCCCCEEEEEECCCCEEEEEEECCHHHCCHHHHHHHHHHHCCCCCC
SDASIARIHWLHSVVMPLFTVLALFSHVYAARKAKLF
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MKSLVTLRIPSLQLGGSALQDGPMEVTNRSAQERFKQWLPYLSSATVTFLVLALLTGVLL
CCCEEEEECCCEECCCCCCCCCCHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
GANFVPSLGAYDSTRQITYQTSFGWAVRGLHWWASSLTLVCSLAFTALAYWYGYFRGPAK
CCCCCCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHH
WMWWTGLVMGLMLLGANVTGYYLPLDQNAYWRLMIEANLLADVPVLGAAVKYFLLNGSGV
HHHHHHHHHHHHHHCCCCCEEEEEECCCCEEEEEEECCHHHCCHHHHHHHHHHHCCCCCC
SDASIARIHWLHSVVMPLFTVLALFSHVYAARKAKLF
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 14621292 [H]