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The map label for this gene is petD [H]

Identifier: 37521438

GI number: 37521438

Start: 1990482

End: 1990889

Strand: Reverse

Name: petD [H]

Synonym: gvip257

Alternate gene names: 37521438

Gene position: 1990889-1990482 (Counterclockwise)

Preceding gene: 37521439

Following gene: 37521431

Centisome position: 42.73

GC content: 58.58

Gene sequence:

>408_bases
ATGTATACGCAGCAAGAAAAGCAAAACTCTTCTAAAACCTTGCCCGCCGTTGGTCGCTCGCTCGATACGCGGGTCTTCGA
TATTGCTTTGGTAGTCATTGCATCGATCGGGGTGGCGCTAGTACTCACGGTTCTCGAACCGCCGCGCCTCATCGAAGCCT
ACGACGTCTTCGCCACCCCCGAGGTGCTTCCCGAGTGGTACATGCTGCCCGCCTTTTTCATCATCAAGGCTCTGCCTGCC
AAGATTCTGGGGCTTGCTGCGATGGCCGGGGTGGTGGCCGGGTTGTTCCTGCTGCCGTTGTTGCCCGATTTGGGCAAGCG
TTTGCCGGGGGGCCGCTTTTTGGGCCGGGCGGCGTTTGTCGCTATTCACCTCGGAGTCGCCGTGCTGGGCTTTTTGACAC
TGGTTTAA

Upstream 100 bases:

>100_bases
CTGCTCAACGGTTCGGGGGTGAGCGACGCGAGCATCGCCCGAATCCACTGGTTGCACAGCGTCGTGATGCCTTTGTTCAC
CGTACTGGCTTTGTTCTCCC

Downstream 100 bases:

>100_bases
GCGGTCAGGACAGACCGGTGCCGTTGAGCACCTTGAGGATAGCTTCCGCCCCTCTGGCGATGACGCCCGGTTCACCCAAT
TGGGCTTTGACCCGCGCGTA

Product: cytochrome b6-f complex subunit 4

Products: NA

Alternate protein names: 17 kDa polypeptide [H]

Number of amino acids: Translated: 135; Mature: 135

Protein sequence:

>135_residues
MYTQQEKQNSSKTLPAVGRSLDTRVFDIALVVIASIGVALVLTVLEPPRLIEAYDVFATPEVLPEWYMLPAFFIIKALPA
KILGLAAMAGVVAGLFLLPLLPDLGKRLPGGRFLGRAAFVAIHLGVAVLGFLTLV

Sequences:

>Translated_135_residues
MYTQQEKQNSSKTLPAVGRSLDTRVFDIALVVIASIGVALVLTVLEPPRLIEAYDVFATPEVLPEWYMLPAFFIIKALPA
KILGLAAMAGVVAGLFLLPLLPDLGKRLPGGRFLGRAAFVAIHLGVAVLGFLTLV
>Mature_135_residues
MYTQQEKQNSSKTLPAVGRSLDTRVFDIALVVIASIGVALVLTVLEPPRLIEAYDVFATPEVLPEWYMLPAFFIIKALPA
KILGLAAMAGVVAGLFLLPLLPDLGKRLPGGRFLGRAAFVAIHLGVAVLGFLTLV

Specific function: Component of the cytochrome b6-f complex, which mediates electron transfer between photosystem II (PSII) and photosystem I (PSI), cyclic electron flow around PSI, and state transitions [H]

COG id: COG1290

COG function: function code C; Cytochrome b subunit of the bc complex

Gene ontology:

Cell location: Cellular thylakoid membrane; Multi-pass membrane protein [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the cytochrome b family. PetD subfamily [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR016175
- InterPro:   IPR005798
- InterPro:   IPR005870 [H]

Pfam domain/function: PF00032 Cytochrom_B_C [H]

EC number: NA

Molecular weight: Translated: 14455; Mature: 14455

Theoretical pI: Translated: 9.63; Mature: 9.63

Prosite motif: PS51003 CYTB_CTER

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MYTQQEKQNSSKTLPAVGRSLDTRVFDIALVVIASIGVALVLTVLEPPRLIEAYDVFATP
CCCCHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCH
EVLPEWYMLPAFFIIKALPAKILGLAAMAGVVAGLFLLPLLPDLGKRLPGGRFLGRAAFV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHH
AIHLGVAVLGFLTLV
HHHHHHHHHHHHHHC
>Mature Secondary Structure
MYTQQEKQNSSKTLPAVGRSLDTRVFDIALVVIASIGVALVLTVLEPPRLIEAYDVFATP
CCCCHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCH
EVLPEWYMLPAFFIIKALPAKILGLAAMAGVVAGLFLLPLLPDLGKRLPGGRFLGRAAFV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHH
AIHLGVAVLGFLTLV
HHHHHHHHHHHHHHC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA