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The map label for this gene is ykoM [H]

Identifier: 37521391

GI number: 37521391

Start: 1941452

End: 1941919

Strand: Direct

Name: ykoM [H]

Synonym: glr1822

Alternate gene names: 37521391

Gene position: 1941452-1941919 (Clockwise)

Preceding gene: 37521389

Following gene: 37521392

Centisome position: 41.67

GC content: 65.17

Gene sequence:

>468_bases
ATGGGAACGAAGTATCGGGGCACCCCGGCGGAGGTCCGGGCACTGGACGCCTATATCAAACTGACGCGGGCCAGCGATGC
GGTGAGTGGCCGCATCCACGCGCATCTTGCCGGTGCCAACCTCACCGTCAGCCAGTTTGGCGTCCTCGAAGCGCTGTTGC
ACCTGGGGCCGCTCTGTCAGAGTGCTCTGGCGGGGAAATTGCTCAAAAGCGGCGGCAATATGACCCTGGTGATCGACAAC
CTTGAAAAGCGGGGACTGGTAGAACGGGTCCGCTCCGTCACCGACCGCCGCTATATCACGGTGCACCTCACCGAGGCCGG
GCGGGAACTGGTCGAGCGGCTGCTCAAGCCCCACGTCCAGGGGGTGGTCGCGGCGATGGACGCCCTCACCCCCGACGAGC
AAGAGACCCTCGGCACCCTGTGCCGCAAACTCGGCACGGCTCAACTGGGGACACCGGCAGACAAGTAG

Upstream 100 bases:

>100_bases
CCAGACTAAATGTCCGCTCCGCCGGTGCCTATCTCTCCGCCGACGGAAGGGAAACAGCGGCTAGATGCATTAACATCAAA
CAGTTTGATCAACAAAGACC

Downstream 100 bases:

>100_bases
TTTAATATTAAAGTATTCGATGTATTATTATACTAGGACGAATTGAAGCCGGTAACCTTGCCGGCATTCCGGGAGACAGA
CATGATCACATTGCGAGCGA

Product: MarR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 155; Mature: 154

Protein sequence:

>155_residues
MGTKYRGTPAEVRALDAYIKLTRASDAVSGRIHAHLAGANLTVSQFGVLEALLHLGPLCQSALAGKLLKSGGNMTLVIDN
LEKRGLVERVRSVTDRRYITVHLTEAGRELVERLLKPHVQGVVAAMDALTPDEQETLGTLCRKLGTAQLGTPADK

Sequences:

>Translated_155_residues
MGTKYRGTPAEVRALDAYIKLTRASDAVSGRIHAHLAGANLTVSQFGVLEALLHLGPLCQSALAGKLLKSGGNMTLVIDN
LEKRGLVERVRSVTDRRYITVHLTEAGRELVERLLKPHVQGVVAAMDALTPDEQETLGTLCRKLGTAQLGTPADK
>Mature_154_residues
GTKYRGTPAEVRALDAYIKLTRASDAVSGRIHAHLAGANLTVSQFGVLEALLHLGPLCQSALAGKLLKSGGNMTLVIDNL
EKRGLVERVRSVTDRRYITVHLTEAGRELVERLLKPHVQGVVAAMDALTPDEQETLGTLCRKLGTAQLGTPADK

Specific function: Negative Regulator Of The Multidrug Operon Emrab. [C]

COG id: COG1846

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH marR-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000835
- InterPro:   IPR023187
- InterPro:   IPR011991 [H]

Pfam domain/function: PF01047 MarR [H]

EC number: NA

Molecular weight: Translated: 16635; Mature: 16503

Theoretical pI: Translated: 9.61; Mature: 9.61

Prosite motif: PS50995 HTH_MARR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGTKYRGTPAEVRALDAYIKLTRASDAVSGRIHAHLAGANLTVSQFGVLEALLHLGPLCQ
CCCCCCCCHHHHHHHHHHHHHHHCCCHHCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHH
SALAGKLLKSGGNMTLVIDNLEKRGLVERVRSVTDRRYITVHLTEAGRELVERLLKPHVQ
HHHHHHHHHCCCCEEEEEECCHHCHHHHHHHHHHCCEEEEEEEHHHHHHHHHHHHHHHHH
GVVAAMDALTPDEQETLGTLCRKLGTAQLGTPADK
HHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCCC
>Mature Secondary Structure 
GTKYRGTPAEVRALDAYIKLTRASDAVSGRIHAHLAGANLTVSQFGVLEALLHLGPLCQ
CCCCCCCHHHHHHHHHHHHHHHCCCHHCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHH
SALAGKLLKSGGNMTLVIDNLEKRGLVERVRSVTDRRYITVHLTEAGRELVERLLKPHVQ
HHHHHHHHHCCCCEEEEEECCHHCHHHHHHHHHHCCEEEEEEEHHHHHHHHHHHHHHHHH
GVVAAMDALTPDEQETLGTLCRKLGTAQLGTPADK
HHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]