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The map label for this gene is qseB [H]

Identifier: 34498090

GI number: 34498090

Start: 2843829

End: 2844494

Strand: Reverse

Name: qseB [H]

Synonym: CV_2635

Alternate gene names: 34498090

Gene position: 2844494-2843829 (Counterclockwise)

Preceding gene: 34498093

Following gene: 34498089

Centisome position: 59.87

GC content: 61.41

Gene sequence:

>666_bases
ATGAGGGTATTACTGGTTGAGGACAATCGGCTGATCGCTCAGGGCATCGTTACAGGCTTGCGCGCCAATGGCTGCATCGT
GGATGCGGTTGGCAGCGCTGCTCAGGCGGACCTTGCCCTGGCCACATTGAACGTGGATGTGATGATTCTGAATCTGGGCT
TGCCGGATGAGAATGGCATGAGCCTGCTTCGCCGCCTCCGCACTCGCGGGGTGAGGGTGCCTATCCTGGTGCTGACTGCG
CGGGATTCGGTTGAGGACAGGGTGGCGGCCTTGCGCGCCGGCGCCGACGATTATCTGCTGAAGCCATTCGACCTGGATGA
GCTGGTCGCGAGGCTGCATGCGCTGACTCGGCGTATGGCCGGCCGCAGCGTGGATGTGATCGAGGATGGTCGCCTGCGCT
TGGACCCGGCTCGAGGCGAGGTGTGGCTGGATGAATCCCCTGTGGCGCTGACCCGCAGGGAAATGGCCCTGTTGATGGCC
TTGCTGCGCGCCGATGGCCGCATCCTCAGTCCCGACCAGCTGAAAGACAGGCTGTACGACTATAGCGAGGAAATTGAAAG
CAATGCCCTGAACGTCCATATCTGCCATCTGCGGCGCAAGCTCGGTCCGAATGTGGTGAAAACCGTCAGGGGCTTGGGTT
ATCGCTATGGCGGAGTCGGGAAGTGA

Upstream 100 bases:

>100_bases
TCCGTTAGTGAAGTCGCCCGTAGCTTCGATGACTTCAATTAAGCCAATGTTAACTCCGACTTAATCTGCCCGATCCATGC
TTATGGCTGGAGGGGAGAAA

Downstream 100 bases:

>100_bases
GCGTGAGGCTGCGCCTATTCCTGATATTGGGCGCGGTTCTTGGCCTGTTGCTCGCCTGCGGGGCGGTCTGGTTTCTGTCG
GAGCTGGGATCGGTTGCGGA

Product: two-component response regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 221; Mature: 221

Protein sequence:

>221_residues
MRVLLVEDNRLIAQGIVTGLRANGCIVDAVGSAAQADLALATLNVDVMILNLGLPDENGMSLLRRLRTRGVRVPILVLTA
RDSVEDRVAALRAGADDYLLKPFDLDELVARLHALTRRMAGRSVDVIEDGRLRLDPARGEVWLDESPVALTRREMALLMA
LLRADGRILSPDQLKDRLYDYSEEIESNALNVHICHLRRKLGPNVVKTVRGLGYRYGGVGK

Sequences:

>Translated_221_residues
MRVLLVEDNRLIAQGIVTGLRANGCIVDAVGSAAQADLALATLNVDVMILNLGLPDENGMSLLRRLRTRGVRVPILVLTA
RDSVEDRVAALRAGADDYLLKPFDLDELVARLHALTRRMAGRSVDVIEDGRLRLDPARGEVWLDESPVALTRREMALLMA
LLRADGRILSPDQLKDRLYDYSEEIESNALNVHICHLRRKLGPNVVKTVRGLGYRYGGVGK
>Mature_221_residues
MRVLLVEDNRLIAQGIVTGLRANGCIVDAVGSAAQADLALATLNVDVMILNLGLPDENGMSLLRRLRTRGVRVPILVLTA
RDSVEDRVAALRAGADDYLLKPFDLDELVARLHALTRRMAGRSVDVIEDGRLRLDPARGEVWLDESPVALTRREMALLMA
LLRADGRILSPDQLKDRLYDYSEEIESNALNVHICHLRRKLGPNVVKTVRGLGYRYGGVGK

Specific function: Member of a two-component regulatory system qseB/qseC. Activates the flagella regulon by activating transcription of flhDC. Currently it is not known whether this effect is direct or not [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 response regulatory domain [H]

Homologues:

Organism=Escherichia coli, GI1789402, Length=217, Percent_Identity=46.0829493087558, Blast_Score=187, Evalue=6e-49,
Organism=Escherichia coli, GI1790552, Length=214, Percent_Identity=39.7196261682243, Blast_Score=163, Evalue=1e-41,
Organism=Escherichia coli, GI1787375, Length=220, Percent_Identity=40.9090909090909, Blast_Score=159, Evalue=2e-40,
Organism=Escherichia coli, GI1786784, Length=219, Percent_Identity=34.2465753424658, Blast_Score=121, Evalue=3e-29,
Organism=Escherichia coli, GI1790860, Length=225, Percent_Identity=37.7777777777778, Blast_Score=120, Evalue=6e-29,
Organism=Escherichia coli, GI87082012, Length=225, Percent_Identity=33.3333333333333, Blast_Score=120, Evalue=1e-28,
Organism=Escherichia coli, GI1786599, Length=226, Percent_Identity=35.3982300884956, Blast_Score=119, Evalue=1e-28,
Organism=Escherichia coli, GI1786911, Length=221, Percent_Identity=36.1990950226244, Blast_Score=114, Evalue=5e-27,
Organism=Escherichia coli, GI1789809, Length=229, Percent_Identity=34.061135371179, Blast_Score=111, Evalue=3e-26,
Organism=Escherichia coli, GI1788394, Length=229, Percent_Identity=31.0043668122271, Blast_Score=97, Evalue=1e-21,
Organism=Escherichia coli, GI1787229, Length=220, Percent_Identity=32.7272727272727, Blast_Score=91, Evalue=7e-20,
Organism=Escherichia coli, GI2367329, Length=226, Percent_Identity=33.1858407079646, Blast_Score=89, Evalue=2e-19,
Organism=Escherichia coli, GI1790863, Length=231, Percent_Identity=26.8398268398268, Blast_Score=83, Evalue=2e-17,
Organism=Escherichia coli, GI1788550, Length=107, Percent_Identity=33.6448598130841, Blast_Score=73, Evalue=1e-14,
Organism=Escherichia coli, GI1790299, Length=108, Percent_Identity=32.4074074074074, Blast_Score=66, Evalue=2e-12,
Organism=Escherichia coli, GI145693140, Length=232, Percent_Identity=28.0172413793103, Blast_Score=65, Evalue=3e-12,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011006
- InterPro:   IPR001867
- InterPro:   IPR001789
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00072 Response_reg; PF00486 Trans_reg_C [H]

EC number: NA

Molecular weight: Translated: 24396; Mature: 24396

Theoretical pI: Translated: 8.70; Mature: 8.70

Prosite motif: PS50110 RESPONSE_REGULATORY

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRVLLVEDNRLIAQGIVTGLRANGCIVDAVGSAAQADLALATLNVDVMILNLGLPDENGM
CEEEEEECCCCHHHHHHHHHCCCCEEEECCCCCHHHCEEEEEEEEEEEEEEECCCCCHHH
SLLRRLRTRGVRVPILVLTARDSVEDRVAALRAGADDYLLKPFDLDELVARLHALTRRMA
HHHHHHHHCCCEEEEEEEECCCCHHHHHHHHHCCCCCCEECCCCHHHHHHHHHHHHHHHC
GRSVDVIEDGRLRLDPARGEVWLDESPVALTRREMALLMALLRADGRILSPDQLKDRLYD
CCCCCEEECCCEEEECCCCEEEECCCCHHHHHHHHHHHHHHHHCCCCEECHHHHHHHHHH
YSEEIESNALNVHICHLRRKLGPNVVKTVRGLGYRYGGVGK
HHHHHHCCCEEEEHHHHHHHHCHHHHHHHHHCCCCCCCCCC
>Mature Secondary Structure
MRVLLVEDNRLIAQGIVTGLRANGCIVDAVGSAAQADLALATLNVDVMILNLGLPDENGM
CEEEEEECCCCHHHHHHHHHCCCCEEEECCCCCHHHCEEEEEEEEEEEEEEECCCCCHHH
SLLRRLRTRGVRVPILVLTARDSVEDRVAALRAGADDYLLKPFDLDELVARLHALTRRMA
HHHHHHHHCCCEEEEEEEECCCCHHHHHHHHHCCCCCCEECCCCHHHHHHHHHHHHHHHC
GRSVDVIEDGRLRLDPARGEVWLDESPVALTRREMALLMALLRADGRILSPDQLKDRLYD
CCCCCEEECCCEEEECCCCEEEECCCCHHHHHHHHHHHHHHHHCCCCEECHHHHHHHHHH
YSEEIESNALNVHICHLRRKLGPNVVKTVRGLGYRYGGVGK
HHHHHHCCCEEEEHHHHHHHHCHHHHHHHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796; 11929534 [H]