Click here to switch to the map view.

The map label for this gene is cpbD [H]

Identifier: 34498047

GI number: 34498047

Start: 2792035

End: 2793195

Strand: Reverse

Name: cpbD [H]

Synonym: CV_2592

Alternate gene names: 34498047

Gene position: 2793195-2792035 (Counterclockwise)

Preceding gene: 34498048

Following gene: 34498046

Centisome position: 58.79

GC content: 62.45

Gene sequence:

>1161_bases
ATGAAATTAGCTTTCATGCCCGCGGGCATTGGTATCGCCTTGGCAGGCTTGAGCGGCGCGTCATGGGCGCACGGCACCAT
GGAGGTGCCCGTCAACCGGGTCTACAGCTGCTATCAGGAGGGCGCGGAATCGCCGAAGACGCCGGCCTGCCAGGAAGCCA
AGCGCGTCGGCGGCACGCAGGCGATGTACGACTGGAACGGCATCAATCAAAACCCGCCTGGCGACAATCATCAAGCCGTG
GTTCCCGATGGCATGCTGTGCGCGGCCGGCCAGTCGAAATTCAAGGGTTTCAACCTGGCGCGCACCGACTGGCCCGCCAC
CAATATCGTGCCGAACGCCAGCGGCAATTTCGAGTTCATCTATAAAGCGCCGGCTCCGCATGCCACCAAATACTTCCGGT
TTTATGTGACCAAGAACGGCTGGAATCCGAGCCAGCCGCTCAAGTGGTCTGATCTGGAACTGTTTGGCACCTATAACGGC
AATCCGCCGCTGGACGCCAGCCAGCGCTATCACATGACCATGAAGCTGCCGACCGGCAAAACCGGCCGCCACATCATCTA
CAACGTGTGGAAGCGTTCGGATAGCGAAGAGGCCTTTTACTCCTGCTCCGACGTCAACTTCGGCAACGGCGGCCCGCAGC
CGGAGCCGCCGCCGATCTCCAATCCGTGGAAGGAAGTGGGCAGTGTGACCGCTCACGAGAACCTGCCGAACAAGAGTTCG
GTGACGCTGCGCATCTTCGACGGCAGCGGTCGCGATGTGGAGAGCCACAAGGTGGATCTGAGCGCCACGACCGGCCAGGC
GGCCAACTGGCCGTACGAGCTGGGCGTCAAGGTCAACGCCAGCTCCCAGATCGGCCGCATCGGCGTGATCAGCAGCAAGC
AACGCACCGTCACGATCAACCCGGTCCGCAGCGCCACCGCCAACCGCGTGTGGCTGAATGAGCGCTATAGCGGCTATCGG
TACCAGATCGACATCAAGAAAGGCGATGACGGGGTTACGCCGCCGCCTGCCGGCGATGCATGGCGCGAAGGCGTCGCCTA
CGCCGTAGGACAGGTCGTCAGCTATCAGAATCGCCGTTACCGCTGTCTGCAGGCTCATACCGCTTGGGTTGGCGCGGGTT
GGACGCCGTCCACCACGCCGGCGCTGTGGACTCCCGTCTAA

Upstream 100 bases:

>100_bases
AGTACAAGGGACACCACGCGTTCATGCGCTGTATTCAATGCCTTGCCGTGAATGACATTCGCAATTTTGGTATCCAAATA
CCGGATCAAGGGGTCTTAAA

Downstream 100 bases:

>100_bases
ATAAAGGCGCGCTTGGAGAGGGTTCGGGAGGCGGCATGCCGCTTCCCTCCATCCTGCCGATTGGAGTATTCATGAAACGT
TATCCCCCTTTGGCGATGGC

Product: carbohydrate-binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 386; Mature: 386

Protein sequence:

>386_residues
MKLAFMPAGIGIALAGLSGASWAHGTMEVPVNRVYSCYQEGAESPKTPACQEAKRVGGTQAMYDWNGINQNPPGDNHQAV
VPDGMLCAAGQSKFKGFNLARTDWPATNIVPNASGNFEFIYKAPAPHATKYFRFYVTKNGWNPSQPLKWSDLELFGTYNG
NPPLDASQRYHMTMKLPTGKTGRHIIYNVWKRSDSEEAFYSCSDVNFGNGGPQPEPPPISNPWKEVGSVTAHENLPNKSS
VTLRIFDGSGRDVESHKVDLSATTGQAANWPYELGVKVNASSQIGRIGVISSKQRTVTINPVRSATANRVWLNERYSGYR
YQIDIKKGDDGVTPPPAGDAWREGVAYAVGQVVSYQNRRYRCLQAHTAWVGAGWTPSTTPALWTPV

Sequences:

>Translated_386_residues
MKLAFMPAGIGIALAGLSGASWAHGTMEVPVNRVYSCYQEGAESPKTPACQEAKRVGGTQAMYDWNGINQNPPGDNHQAV
VPDGMLCAAGQSKFKGFNLARTDWPATNIVPNASGNFEFIYKAPAPHATKYFRFYVTKNGWNPSQPLKWSDLELFGTYNG
NPPLDASQRYHMTMKLPTGKTGRHIIYNVWKRSDSEEAFYSCSDVNFGNGGPQPEPPPISNPWKEVGSVTAHENLPNKSS
VTLRIFDGSGRDVESHKVDLSATTGQAANWPYELGVKVNASSQIGRIGVISSKQRTVTINPVRSATANRVWLNERYSGYR
YQIDIKKGDDGVTPPPAGDAWREGVAYAVGQVVSYQNRRYRCLQAHTAWVGAGWTPSTTPALWTPV
>Mature_386_residues
MKLAFMPAGIGIALAGLSGASWAHGTMEVPVNRVYSCYQEGAESPKTPACQEAKRVGGTQAMYDWNGINQNPPGDNHQAV
VPDGMLCAAGQSKFKGFNLARTDWPATNIVPNASGNFEFIYKAPAPHATKYFRFYVTKNGWNPSQPLKWSDLELFGTYNG
NPPLDASQRYHMTMKLPTGKTGRHIIYNVWKRSDSEEAFYSCSDVNFGNGGPQPEPPPISNPWKEVGSVTAHENLPNKSS
VTLRIFDGSGRDVESHKVDLSATTGQAANWPYELGVKVNASSQIGRIGVISSKQRTVTINPVRSATANRVWLNERYSGYR
YQIDIKKGDDGVTPPPAGDAWREGVAYAVGQVVSYQNRRYRCLQAHTAWVGAGWTPSTTPALWTPV

Specific function: Probably interacts with GlcNAc residues. May promote attachment to both epithelial cell surfaces and chitin [H]

COG id: COG3397

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Secreted [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 chitin-binding type-4 domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003610
- InterPro:   IPR004302
- InterPro:   IPR020879
- InterPro:   IPR014756 [H]

Pfam domain/function: PF02839 CBM_5_12; PF03067 Chitin_bind_3 [H]

EC number: NA

Molecular weight: Translated: 42274; Mature: 42274

Theoretical pI: Translated: 9.29; Mature: 9.29

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKLAFMPAGIGIALAGLSGASWAHGTMEVPVNRVYSCYQEGAESPKTPACQEAKRVGGTQ
CEEEEEECCCEEEEECCCCCCCCCCEEECCHHHHHHHHHHHCCCCCCCCHHHHHHCCCCE
AMYDWNGINQNPPGDNHQAVVPDGMLCAAGQSKFKGFNLARTDWPATNIVPNASGNFEFI
EEEECCCCCCCCCCCCCEEECCCCEEEECCCCCCCCCCEECCCCCCCCCCCCCCCCEEEE
YKAPAPHATKYFRFYVTKNGWNPSQPLKWSDLELFGTYNGNPPLDASQRYHMTMKLPTGK
EECCCCCCCEEEEEEEEECCCCCCCCCCCCCEEEEEECCCCCCCCCCCEEEEEEECCCCC
TGRHIIYNVWKRSDSEEAFYSCSDVNFGNGGPQPEPPPISNPWKEVGSVTAHENLPNKSS
CCCEEEEEEECCCCCCHHEEEECCCCCCCCCCCCCCCCCCCHHHHHCCEEECCCCCCCCE
VTLRIFDGSGRDVESHKVDLSATTGQAANWPYELGVKVNASSQIGRIGVISSKQRTVTIN
EEEEEECCCCCCCHHEEEEEEECCCCCCCCCEEEEEEEECCCCCCEEEEECCCCEEEEEC
PVRSATANRVWLNERYSGYRYQIDIKKGDDGVTPPPAGDAWREGVAYAVGQVVSYQNRRY
CCCCCCCCEEEEECCCCCEEEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCE
RCLQAHTAWVGAGWTPSTTPALWTPV
EEEEEEEEEEECCCCCCCCCEEECCC
>Mature Secondary Structure
MKLAFMPAGIGIALAGLSGASWAHGTMEVPVNRVYSCYQEGAESPKTPACQEAKRVGGTQ
CEEEEEECCCEEEEECCCCCCCCCCEEECCHHHHHHHHHHHCCCCCCCCHHHHHHCCCCE
AMYDWNGINQNPPGDNHQAVVPDGMLCAAGQSKFKGFNLARTDWPATNIVPNASGNFEFI
EEEECCCCCCCCCCCCCEEECCCCEEEECCCCCCCCCCEECCCCCCCCCCCCCCCCEEEE
YKAPAPHATKYFRFYVTKNGWNPSQPLKWSDLELFGTYNGNPPLDASQRYHMTMKLPTGK
EECCCCCCCEEEEEEEEECCCCCCCCCCCCCEEEEEECCCCCCCCCCCEEEEEEECCCCC
TGRHIIYNVWKRSDSEEAFYSCSDVNFGNGGPQPEPPPISNPWKEVGSVTAHENLPNKSS
CCCEEEEEEECCCCCCHHEEEECCCCCCCCCCCCCCCCCCCHHHHHCCEEECCCCCCCCE
VTLRIFDGSGRDVESHKVDLSATTGQAANWPYELGVKVNASSQIGRIGVISSKQRTVTIN
EEEEEECCCCCCCHHEEEEEEECCCCCCCCCEEEEEEEECCCCCCEEEEECCCCEEEEEC
PVRSATANRVWLNERYSGYRYQIDIKKGDDGVTPPPAGDAWREGVAYAVGQVVSYQNRRY
CCCCCCCCEEEEECCCCCEEEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCE
RCLQAHTAWVGAGWTPSTTPALWTPV
EEEEEEEEEEECCCCCCCCCEEECCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA