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The map label for this gene is yciR [C]

Identifier: 34498023

GI number: 34498023

Start: 2768900

End: 2771251

Strand: Reverse

Name: yciR [C]

Synonym: CV_2568

Alternate gene names: 34498023

Gene position: 2771251-2768900 (Counterclockwise)

Preceding gene: 34498027

Following gene: 34498022

Centisome position: 58.33

GC content: 69.43

Gene sequence:

>2352_bases
ATGCATACGGATGAAATGGCACTCCTGGCGAACATGTGCCGCTTTATCGGAATCCGGACCGAACACCTGGCGCAATTGCC
GCGCCACGCCGACGCGGGGCTGGCCCGCAGGGAGCTGCTGGGCAAGGAGCTTTACTGGCATCTGCTGAAAAGCCCCGGCG
AGGCGGAGCGCTTGCAGCGCCACCATGGCTGCGATCAGGACGAGCTGGCGGCGATGCTGCTGGCGGAGTGGGACGCGCTG
CTGAGCGCGCCGCTGGACTCGGCCGTGGCAGCGGCGCTGGTCGAGCAGGGCGAACTGTATTGCCGGCTGGGCGTGAGCCT
GGGCTGGCTGCAGGGCCTGTACGAGCGTTGCCAGCCGCATCTGCTTGGCGGTTTGGAGCAGGCGGCGGGCACCGAGGCGG
CTCGGCTGCTGCGCAAGCGCATCCTGCTGGACCAGATGCTGAAGACCCATGGCTACCAGCAGGCGCTGAAGCGCGAGGCT
TCGCGCCATGGCGAGCATTTCCAGGCGATGTCCGGCCTGTACGCGACGCTGAGCGGCGTCAGCTTGGCGCTGGCCGACAG
CGCCGACCGCCGCATCCTGCTGCAGACCGTCTGCGACGTCTGCGTGCGCGAGGCCGGCTTCGAAATGGCCTGGGTGGGCC
TGCTGGACGCGGACGAAAAGCGCGTCGAGGTGGCGGCGCTGTCCCGCGGCGAGCGGGCGTCCATGCCCGGCGAGCTGCCG
GGGCACGCCGAGGACGCGCAGGCGCCGGGCCCGGTGTCGCGCGCGCTGCGCAGCCGCGCGGCCCAGGTCAGCAACGACGC
GCAATCCGATCCCGCACTGAAGCCCTGGCACGGCGCGCTGAGCCGCCAGGGCATCCGCAGCCTGCTGGTGGTGCCGCTGC
TGGTGCGCCAGCAGGTGGCGGGCGCGCTGGCGCTGCACGCCGGCGAAGAGGGTTTTTTCGACCAGTCCCGCCGCGCGCTG
TTCGAGTTGATGGCGCGCGAGATCGGCCGCGGGCTGGAGCGCCATGACGCGCTGGAGCGCAGCCACCGCGCCGAGACCGA
GCTCGCTTTCCTGGCCCAGCACGACGCCCTGACCGGTCTGCCCAATCGCAACCGCATGCAGGAACTGATTGCCCGGCTGC
TGCAGTCGCGCCGCGACGGCGGCCAGGTGGCGGTGCTGGCGATCGCCGTTGAAGGCTTCCACGACATCAACGCCCGGCTG
GGCTACGAGGGCGGCGACCTGGTGCTGTGCGAGATGGCGCGCCGCCTGCGCCAGGCCATCTACCCGTTCGGCCATGTCGG
CCGGGTCGGCGCCGCGCGCTTCGTCGCCTGCTCGGAACGCACAGACAGGCTGCAGGAGCTGGTGGAAGAGCTGATGAGCT
TGTTGCCGCAGCCGGTGGACGCGATGGGCGCCCAGGTGGAGATACGCTGCAGCGTCGGCGTCGCGGTCAGCGGTGACGCG
CTGTGCGATGCGGCCAACCTGCTGCGCCGCGCCGGCCTGGCGCTGAACCGCGCCAAGGAGGAGGGCGGCGGCCACTCCCG
CCACTACGACGCGGCGATGGACGAGGAAATCCACAAGCTGCACGCGCTGCGCAGCGCGTTCGCGCTGGCCATTCCCCGCG
GCGAGCTGGCGCTGTTCTACCAGCCCAAGATCAATCTGCAGAATCACCGCATCGAAGGCGCGGAGGCGCTGGTGCGCTGG
GTGCGCAACGGGCGGCACGTGCCGCCGGGCGAGTTCTTCACTGCGATCGAGCATACCAACCTGATGCGCGAGCTGGACTG
GTGGGTGCTGCGCGAGGCGGTGCGGCAGATGGGCGAGTGGCGCCGGCGCGGCCTGTCGCTGCCGGTCAGCGTCAATCTGT
CCGCCGCCACGCTGAAGCATGAGGATTTTCTGCTGGGGCTGGAGACGCTGCTGGAGGCGAACCCGCTGCCGGCGGGCTTC
CTGGAGCTGGAAGTGCTGGAAACCGTCACCCAGCAGGAAGCGGAGCAGATCACCGCCAAGCTGGAGCGCTGCCGCGACCT
GGGCCTGTCCATCGCGCTGGACGACTTCGGCACCGGCGCGTCGTCGCTGGTGCATCTGCAGCAGTTGCCGTTCGATACCA
TCAAGATCGACCAGCGCTTCGTGCGCCTGCTGCTGGACATGCCGGGCAACGAGGCCATCATCCGCAGCATGCTGTCCTTC
GCCCACTATACCGGGCGCAAGCTGGTGGTGGAGGGGGTGGAGAGCCGCGCGATCTGGAGCCGGCTGCGCGAGATCGGCTG
CCATGACGGCCAGGGCTACGGCATCTCGCCGCCCTTGGCCGCCGGAGAATTGCCGGAGTGGTTGAAGCAGTGGAGCAAGG
GCGCGATTATAAATTCTGCTTATGTATCATGA

Upstream 100 bases:

>100_bases
CGACACGGTACAAGAAATACCTGCTCCTGGGCAGGTGGGCGAGATAGTAGGGACGGCGGTCCGGCAGGCCGCGTTCCAGC
CACGACAGGCGCAGAAAACA

Downstream 100 bases:

>100_bases
TTTTTATTAGTTTTACTTAAGCATTTCCGCCGGTTAATCTGCCTGCAAATAGTTTGGAGCAGGCAATGTTCAATTTCAGT
GTTTTCCTTTCCGCGCTGGG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 783; Mature: 783

Protein sequence:

>783_residues
MHTDEMALLANMCRFIGIRTEHLAQLPRHADAGLARRELLGKELYWHLLKSPGEAERLQRHHGCDQDELAAMLLAEWDAL
LSAPLDSAVAAALVEQGELYCRLGVSLGWLQGLYERCQPHLLGGLEQAAGTEAARLLRKRILLDQMLKTHGYQQALKREA
SRHGEHFQAMSGLYATLSGVSLALADSADRRILLQTVCDVCVREAGFEMAWVGLLDADEKRVEVAALSRGERASMPGELP
GHAEDAQAPGPVSRALRSRAAQVSNDAQSDPALKPWHGALSRQGIRSLLVVPLLVRQQVAGALALHAGEEGFFDQSRRAL
FELMAREIGRGLERHDALERSHRAETELAFLAQHDALTGLPNRNRMQELIARLLQSRRDGGQVAVLAIAVEGFHDINARL
GYEGGDLVLCEMARRLRQAIYPFGHVGRVGAARFVACSERTDRLQELVEELMSLLPQPVDAMGAQVEIRCSVGVAVSGDA
LCDAANLLRRAGLALNRAKEEGGGHSRHYDAAMDEEIHKLHALRSAFALAIPRGELALFYQPKINLQNHRIEGAEALVRW
VRNGRHVPPGEFFTAIEHTNLMRELDWWVLREAVRQMGEWRRRGLSLPVSVNLSAATLKHEDFLLGLETLLEANPLPAGF
LELEVLETVTQQEAEQITAKLERCRDLGLSIALDDFGTGASSLVHLQQLPFDTIKIDQRFVRLLLDMPGNEAIIRSMLSF
AHYTGRKLVVEGVESRAIWSRLREIGCHDGQGYGISPPLAAGELPEWLKQWSKGAIINSAYVS

Sequences:

>Translated_783_residues
MHTDEMALLANMCRFIGIRTEHLAQLPRHADAGLARRELLGKELYWHLLKSPGEAERLQRHHGCDQDELAAMLLAEWDAL
LSAPLDSAVAAALVEQGELYCRLGVSLGWLQGLYERCQPHLLGGLEQAAGTEAARLLRKRILLDQMLKTHGYQQALKREA
SRHGEHFQAMSGLYATLSGVSLALADSADRRILLQTVCDVCVREAGFEMAWVGLLDADEKRVEVAALSRGERASMPGELP
GHAEDAQAPGPVSRALRSRAAQVSNDAQSDPALKPWHGALSRQGIRSLLVVPLLVRQQVAGALALHAGEEGFFDQSRRAL
FELMAREIGRGLERHDALERSHRAETELAFLAQHDALTGLPNRNRMQELIARLLQSRRDGGQVAVLAIAVEGFHDINARL
GYEGGDLVLCEMARRLRQAIYPFGHVGRVGAARFVACSERTDRLQELVEELMSLLPQPVDAMGAQVEIRCSVGVAVSGDA
LCDAANLLRRAGLALNRAKEEGGGHSRHYDAAMDEEIHKLHALRSAFALAIPRGELALFYQPKINLQNHRIEGAEALVRW
VRNGRHVPPGEFFTAIEHTNLMRELDWWVLREAVRQMGEWRRRGLSLPVSVNLSAATLKHEDFLLGLETLLEANPLPAGF
LELEVLETVTQQEAEQITAKLERCRDLGLSIALDDFGTGASSLVHLQQLPFDTIKIDQRFVRLLLDMPGNEAIIRSMLSF
AHYTGRKLVVEGVESRAIWSRLREIGCHDGQGYGISPPLAAGELPEWLKQWSKGAIINSAYVS
>Mature_783_residues
MHTDEMALLANMCRFIGIRTEHLAQLPRHADAGLARRELLGKELYWHLLKSPGEAERLQRHHGCDQDELAAMLLAEWDAL
LSAPLDSAVAAALVEQGELYCRLGVSLGWLQGLYERCQPHLLGGLEQAAGTEAARLLRKRILLDQMLKTHGYQQALKREA
SRHGEHFQAMSGLYATLSGVSLALADSADRRILLQTVCDVCVREAGFEMAWVGLLDADEKRVEVAALSRGERASMPGELP
GHAEDAQAPGPVSRALRSRAAQVSNDAQSDPALKPWHGALSRQGIRSLLVVPLLVRQQVAGALALHAGEEGFFDQSRRAL
FELMAREIGRGLERHDALERSHRAETELAFLAQHDALTGLPNRNRMQELIARLLQSRRDGGQVAVLAIAVEGFHDINARL
GYEGGDLVLCEMARRLRQAIYPFGHVGRVGAARFVACSERTDRLQELVEELMSLLPQPVDAMGAQVEIRCSVGVAVSGDA
LCDAANLLRRAGLALNRAKEEGGGHSRHYDAAMDEEIHKLHALRSAFALAIPRGELALFYQPKINLQNHRIEGAEALVRW
VRNGRHVPPGEFFTAIEHTNLMRELDWWVLREAVRQMGEWRRRGLSLPVSVNLSAATLKHEDFLLGLETLLEANPLPAGF
LELEVLETVTQQEAEQITAKLERCRDLGLSIALDDFGTGASSLVHLQQLPFDTIKIDQRFVRLLLDMPGNEAIIRSMLSF
AHYTGRKLVVEGVESRAIWSRLREIGCHDGQGYGISPPLAAGELPEWLKQWSKGAIINSAYVS

Specific function: Unknown

COG id: COG5001

COG function: function code T; Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 PAS (PER-ARNT-SIM) domains [H]

Homologues:

Organism=Escherichia coli, GI1787541, Length=436, Percent_Identity=30.045871559633, Blast_Score=209, Evalue=4e-55,
Organism=Escherichia coli, GI87081921, Length=422, Percent_Identity=30.8056872037915, Blast_Score=202, Evalue=9e-53,
Organism=Escherichia coli, GI226510982, Length=414, Percent_Identity=26.8115942028986, Blast_Score=141, Evalue=2e-34,
Organism=Escherichia coli, GI1787055, Length=237, Percent_Identity=33.3333333333333, Blast_Score=121, Evalue=1e-28,
Organism=Escherichia coli, GI87081743, Length=245, Percent_Identity=32.6530612244898, Blast_Score=110, Evalue=4e-25,
Organism=Escherichia coli, GI1790496, Length=242, Percent_Identity=28.099173553719, Blast_Score=107, Evalue=4e-24,
Organism=Escherichia coli, GI1788502, Length=252, Percent_Identity=31.3492063492063, Blast_Score=100, Evalue=3e-22,
Organism=Escherichia coli, GI87081845, Length=253, Percent_Identity=28.8537549407115, Blast_Score=92, Evalue=2e-19,
Organism=Escherichia coli, GI87081980, Length=257, Percent_Identity=27.6264591439689, Blast_Score=83, Evalue=6e-17,
Organism=Escherichia coli, GI1788849, Length=196, Percent_Identity=28.0612244897959, Blast_Score=80, Evalue=7e-16,
Organism=Escherichia coli, GI87082096, Length=267, Percent_Identity=27.7153558052434, Blast_Score=78, Evalue=3e-15,
Organism=Escherichia coli, GI1786507, Length=277, Percent_Identity=27.7978339350181, Blast_Score=77, Evalue=5e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR001610
- InterPro:   IPR000014
- InterPro:   IPR000700
- InterPro:   IPR013656
- InterPro:   IPR013655 [H]

Pfam domain/function: PF00563 EAL; PF00990 GGDEF; PF08447 PAS_3; PF08448 PAS_4 [H]

EC number: NA

Molecular weight: Translated: 86574; Mature: 86574

Theoretical pI: Translated: 6.54; Mature: 6.54

Prosite motif: PS50883 EAL ; PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MHTDEMALLANMCRFIGIRTEHLAQLPRHADAGLARRELLGKELYWHLLKSPGEAERLQR
CCCHHHHHHHHHHHHHCCCHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHH
HHGCDQDELAAMLLAEWDALLSAPLDSAVAAALVEQGELYCRLGVSLGWLQGLYERCQPH
HCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHHCCHH
LLGGLEQAAGTEAARLLRKRILLDQMLKTHGYQQALKREASRHGEHFQAMSGLYATLSGV
HHCCHHHHCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCHHHHHHHHHHHHHHCC
SLALADSADRRILLQTVCDVCVREAGFEMAWVGLLDADEKRVEVAALSRGERASMPGELP
CEEEECCCCHHHHHHHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHCCCCCCCCCCCCC
GHAEDAQAPGPVSRALRSRAAQVSNDAQSDPALKPWHGALSRQGIRSLLVVPLLVRQQVA
CCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
GALALHAGEEGFFDQSRRALFELMAREIGRGLERHDALERSHRAETELAFLAQHDALTGL
HHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
PNRNRMQELIARLLQSRRDGGQVAVLAIAVEGFHDINARLGYEGGDLVLCEMARRLRQAI
CCHHHHHHHHHHHHHCCCCCCCEEEEEEEECCHHHCCCCCCCCCCCCHHHHHHHHHHHHH
YPFGHVGRVGAARFVACSERTDRLQELVEELMSLLPQPVDAMGAQVEIRCSVGVAVSGDA
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHCCCCEEEEEEECEEECCHH
LCDAANLLRRAGLALNRAKEEGGGHSRHYDAAMDEEIHKLHALRSAFALAIPRGELALFY
HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEEEE
QPKINLQNHRIEGAEALVRWVRNGRHVPPGEFFTAIEHTNLMRELDWWVLREAVRQMGEW
CCCCCCCCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RRRGLSLPVSVNLSAATLKHEDFLLGLETLLEANPLPAGFLELEVLETVTQQEAEQITAK
HHCCCCCCEEECCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
LERCRDLGLSIALDDFGTGASSLVHLQQLPFDTIKIDQRFVRLLLDMPGNEAIIRSMLSF
HHHHHHCCCEEEECCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHH
AHYTGRKLVVEGVESRAIWSRLREIGCHDGQGYGISPPLAAGELPEWLKQWSKGAIINSA
HHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCHH
YVS
CCC
>Mature Secondary Structure
MHTDEMALLANMCRFIGIRTEHLAQLPRHADAGLARRELLGKELYWHLLKSPGEAERLQR
CCCHHHHHHHHHHHHHCCCHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHH
HHGCDQDELAAMLLAEWDALLSAPLDSAVAAALVEQGELYCRLGVSLGWLQGLYERCQPH
HCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHHCCHH
LLGGLEQAAGTEAARLLRKRILLDQMLKTHGYQQALKREASRHGEHFQAMSGLYATLSGV
HHCCHHHHCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCHHHHHHHHHHHHHHCC
SLALADSADRRILLQTVCDVCVREAGFEMAWVGLLDADEKRVEVAALSRGERASMPGELP
CEEEECCCCHHHHHHHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHCCCCCCCCCCCCC
GHAEDAQAPGPVSRALRSRAAQVSNDAQSDPALKPWHGALSRQGIRSLLVVPLLVRQQVA
CCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
GALALHAGEEGFFDQSRRALFELMAREIGRGLERHDALERSHRAETELAFLAQHDALTGL
HHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
PNRNRMQELIARLLQSRRDGGQVAVLAIAVEGFHDINARLGYEGGDLVLCEMARRLRQAI
CCHHHHHHHHHHHHHCCCCCCCEEEEEEEECCHHHCCCCCCCCCCCCHHHHHHHHHHHHH
YPFGHVGRVGAARFVACSERTDRLQELVEELMSLLPQPVDAMGAQVEIRCSVGVAVSGDA
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHCCCCEEEEEEECEEECCHH
LCDAANLLRRAGLALNRAKEEGGGHSRHYDAAMDEEIHKLHALRSAFALAIPRGELALFY
HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEEEE
QPKINLQNHRIEGAEALVRWVRNGRHVPPGEFFTAIEHTNLMRELDWWVLREAVRQMGEW
CCCCCCCCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RRRGLSLPVSVNLSAATLKHEDFLLGLETLLEANPLPAGFLELEVLETVTQQEAEQITAK
HHCCCCCCEEECCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
LERCRDLGLSIALDDFGTGASSLVHLQQLPFDTIKIDQRFVRLLLDMPGNEAIIRSMLSF
HHHHHHCCCEEEECCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHH
AHYTGRKLVVEGVESRAIWSRLREIGCHDGQGYGISPPLAAGELPEWLKQWSKGAIINSA
HHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCHH
YVS
CCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9163424 [H]