| Definition | Chromobacterium violaceum ATCC 12472 chromosome, complete genome. |
|---|---|
| Accession | NC_005085 |
| Length | 4,751,080 |
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The map label for this gene is yfbR [C]
Identifier: 34497954
GI number: 34497954
Start: 2692119
End: 2692694
Strand: Reverse
Name: yfbR [C]
Synonym: CV_2499
Alternate gene names: 34497954
Gene position: 2692694-2692119 (Counterclockwise)
Preceding gene: 34497955
Following gene: 34497953
Centisome position: 56.68
GC content: 66.15
Gene sequence:
>576_bases ATGCAGAACATCATTGATTTCGTATTGGAAATCGACAAGCTCAAGCAGGTGACGCGCAAGACGCGCGTGCTGAACAGCGA CCGTTACGAGAACTCCGCCGAGCACAGCTGGCAGATCGCGCTGCTGGCGTCCTCGCTGGCGCCTTACGCGGCGGAGCCGG TCAACATGGATCGCGTGGTGGCGATGCTGCTGGTGCACGACATCGGCGAGATCGAGACAGGCGACACCATCGTCTATGCC GAAGGCGGCTGGGAGGAGCGCAAGGCGCAGGAGCTGGCCTGCGTGAGCCGCATCTTCGGCATGCTGCCCGAGGCGCAGGG AAGCCGTTTCCTGGCGCTGTGGAACGAGTTCGAGGCCGGCGAGACCGCCGAGGCGCGTTTTGCCCACGCGGCGGACCGCG CGATGCCGGTGCTGCTGAATCTGGCCAACAGCGGGCAGAGCTGGCGCGAGAACGGCATTCGCCACCAGCAGGTGGTGGAT CGCATCGGTCCGCCGGTACGCGCCGGCTGTCCTGCGCTGTGGGATTACCTGGAAGGCCGGCTGGAGCAGGCGAAGGCGCA CGGCTGGCTGGGCTGA
Upstream 100 bases:
>100_bases CCGGCTGGTGCAGCTGGCGCAAATGATTCAGCGGTGCTGGTAAGCGCCGGAACAAGCAGACTCCGGTCTGCTTTTTTTGT ATCGACAGAAAGAAAACAAG
Downstream 100 bases:
>100_bases GCGAGCGGCGATATTGATGGTCTGAATCGGGCGGACGGCATATGTCGCCGCCATCGCTGTGCTATACCTCAGGTGCCGGG TGCGGAATCCGGCGCGTCCG
Product: hypothetical protein
Products: NA
Alternate protein names: HD Domain-Containing Protein; HD Domain Protein; Metal-Dependent Phosphohydrolase; Metal-Dependent Phosphohydrolase HD Subdomain; HD Superfamily Hydrolase; Hydrolase; Metal-Dependent Phosphohydrolase HD Region; HD Superfamily Hydrolase-Like Protein; Hydrolases Of HD Superfamily; Hydrolase Of HD Superfamily; Metal-Dependent Phosphoesterase; Xin-Antitoxin System Toxin Component PIN Family; HD Superfamily Metal-Dependent Phosphohydrolase
Number of amino acids: Translated: 191; Mature: 191
Protein sequence:
>191_residues MQNIIDFVLEIDKLKQVTRKTRVLNSDRYENSAEHSWQIALLASSLAPYAAEPVNMDRVVAMLLVHDIGEIETGDTIVYA EGGWEERKAQELACVSRIFGMLPEAQGSRFLALWNEFEAGETAEARFAHAADRAMPVLLNLANSGQSWRENGIRHQQVVD RIGPPVRAGCPALWDYLEGRLEQAKAHGWLG
Sequences:
>Translated_191_residues MQNIIDFVLEIDKLKQVTRKTRVLNSDRYENSAEHSWQIALLASSLAPYAAEPVNMDRVVAMLLVHDIGEIETGDTIVYA EGGWEERKAQELACVSRIFGMLPEAQGSRFLALWNEFEAGETAEARFAHAADRAMPVLLNLANSGQSWRENGIRHQQVVD RIGPPVRAGCPALWDYLEGRLEQAKAHGWLG >Mature_191_residues MQNIIDFVLEIDKLKQVTRKTRVLNSDRYENSAEHSWQIALLASSLAPYAAEPVNMDRVVAMLLVHDIGEIETGDTIVYA EGGWEERKAQELACVSRIFGMLPEAQGSRFLALWNEFEAGETAEARFAHAADRAMPVLLNLANSGQSWRENGIRHQQVVD RIGPPVRAGCPALWDYLEGRLEQAKAHGWLG
Specific function: Unknown
COG id: COG1896
COG function: function code R; Predicted hydrolases of HD superfamily
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 21369; Mature: 21369
Theoretical pI: Translated: 4.93; Mature: 4.93
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 2.6 %Met (Translated Protein) 3.7 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 2.6 %Met (Mature Protein) 3.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MQNIIDFVLEIDKLKQVTRKTRVLNSDRYENSAEHSWQIALLASSLAPYAAEPVNMDRVV CHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCHHHHH AMLLVHDIGEIETGDTIVYAEGGWEERKAQELACVSRIFGMLPEAQGSRFLALWNEFEAG HHHHHHHHCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEEHHHCCCC ETAEARFAHAADRAMPVLLNLANSGQSWRENGIRHQQVVDRIGPPVRAGCPALWDYLEGR CCHHHHHHHHHHHHHHHHHHHHCCCCHHHHCCCHHHHHHHHCCCCCCCCCHHHHHHHHHH LEQAKAHGWLG HHHHHHCCCCC >Mature Secondary Structure MQNIIDFVLEIDKLKQVTRKTRVLNSDRYENSAEHSWQIALLASSLAPYAAEPVNMDRVV CHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCHHHHH AMLLVHDIGEIETGDTIVYAEGGWEERKAQELACVSRIFGMLPEAQGSRFLALWNEFEAG HHHHHHHHCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEEHHHCCCC ETAEARFAHAADRAMPVLLNLANSGQSWRENGIRHQQVVDRIGPPVRAGCPALWDYLEGR CCHHHHHHHHHHHHHHHHHHHHCCCCHHHHCCCHHHHHHHHCCCCCCCCCHHHHHHHHHH LEQAKAHGWLG HHHHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA