Click here to switch to the map view.

The map label for this gene is ybhS [H]

Identifier: 34497913

GI number: 34497913

Start: 2644059

End: 2645171

Strand: Reverse

Name: ybhS [H]

Synonym: CV_2458

Alternate gene names: 34497913

Gene position: 2645171-2644059 (Counterclockwise)

Preceding gene: 34497914

Following gene: 34497912

Centisome position: 55.68

GC content: 66.49

Gene sequence:

>1113_bases
ATGAACCTCCGCCGCCTGGCCGCGCTGTGCTGCAAGGAAAGCTATCAGATCGTCCGCGATCCCAGCAGCATTCTGATCGC
TTTCATCTTGCCGGTGGCGCTGCTGTTCATCCTGGGCTATGCGGTGAATCTGGACTCCGCCCACATCCGGCTGGGATTGC
TGGACCTGGACGGCGGCGGCGCGGCGCAACGGCTGGCGGCGACGCTGTACGCCACGCCGGCGCTGGATGTGCGGCCGCTG
CACTCCCGCCCGGAGCTGGAGGAAAAACTGGCCCATGGCAAAATACGCGGCGCGCTGGTGATTCAAAATGGTTTTTCCCG
CGATTGGGCCAACCGCCGGGGCGCGGTGCAGTTGCTGACCGACGGCGCCGAACCGAATACCGCCAACTTCGTCGCCGCCT
ATGCCCAGGGCGCCTGGCTGCGCTGGCAGCAGGCCGAGGGCGACGAGCGTGCCCAGTCCGCCGCGCCAGCCATCGACATC
CGCCAGCGCTTCTGGTTCAACCCCAGCGCGGAGAGCCCCAATTTCCTGGTGCCGGGCACCATCGCCATCGTGATGACCAT
CGTCGGCGCGCTGCTGTCCTCGCTGGTGGTGGCGCGCGAGTGGGAGCGCGGCACCATGGAGGCGCTGCTGGCCACGCCGG
TGAGCCGCGCCGAATTGCTGCTGTCCAAAATCCTGCCGTATTACGTGCTGGGGATCGCGGCCATGCTGTTGTGCCTGCTC
GTCGCCGTGTTCGTGATGCGGGTGCCGTTCCGCGGCCCGCTATGGCTGCTGTGGCTGATGTCCTCGCTGTTCCTGGCCAA
TGCGCTGGGCATGGGGCTGTTTCTGTCCACGGTGATGCGTACCCAGTTCGACGCCGCCCAGGCGGCGCTCACCGCCGGCT
ATCTTCCGGCGCTGATGTTGTCGGGTTTCGTGTTCGAGATATCCAGCATGCCGGCGCCGCTGCAATGGCTGACGCGCATC
CTGCCGGCGAGGTATTTCGCCAGCACGCTGCAAACGCTGTTCCAGGCCGGCGTGATTCCATCGCTGTTGTGGTTCAACGC
CGCCAGCCTGATCCTGCTGGGCGCGTTCTGGCTGGGGCAGACCGTGCGCAAGACGCGGCGCACGCTGGATTGA

Upstream 100 bases:

>100_bases
TGGACACGCCGGACGCGCTCAAAAGCCGTGTGCAAAGCCCCGGCTTGCCCGATCCGACCATGGAGGACGCCTTCATCCTG
CTGGTGGGGGAGGCCGACGC

Downstream 100 bases:

>100_bases
AGCGATGTGGCAACGACTGCTGTGGCTGATCATCAAGGAACTGCAGGCGCTGGCCGGCAACCGCCAGGGGCGCTTGCTGC
TGGTGGTGCCAGTGCTGCTG

Product: ABC transporter permease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 370; Mature: 370

Protein sequence:

>370_residues
MNLRRLAALCCKESYQIVRDPSSILIAFILPVALLFILGYAVNLDSAHIRLGLLDLDGGGAAQRLAATLYATPALDVRPL
HSRPELEEKLAHGKIRGALVIQNGFSRDWANRRGAVQLLTDGAEPNTANFVAAYAQGAWLRWQQAEGDERAQSAAPAIDI
RQRFWFNPSAESPNFLVPGTIAIVMTIVGALLSSLVVAREWERGTMEALLATPVSRAELLLSKILPYYVLGIAAMLLCLL
VAVFVMRVPFRGPLWLLWLMSSLFLANALGMGLFLSTVMRTQFDAAQAALTAGYLPALMLSGFVFEISSMPAPLQWLTRI
LPARYFASTLQTLFQAGVIPSLLWFNAASLILLGAFWLGQTVRKTRRTLD

Sequences:

>Translated_370_residues
MNLRRLAALCCKESYQIVRDPSSILIAFILPVALLFILGYAVNLDSAHIRLGLLDLDGGGAAQRLAATLYATPALDVRPL
HSRPELEEKLAHGKIRGALVIQNGFSRDWANRRGAVQLLTDGAEPNTANFVAAYAQGAWLRWQQAEGDERAQSAAPAIDI
RQRFWFNPSAESPNFLVPGTIAIVMTIVGALLSSLVVAREWERGTMEALLATPVSRAELLLSKILPYYVLGIAAMLLCLL
VAVFVMRVPFRGPLWLLWLMSSLFLANALGMGLFLSTVMRTQFDAAQAALTAGYLPALMLSGFVFEISSMPAPLQWLTRI
LPARYFASTLQTLFQAGVIPSLLWFNAASLILLGAFWLGQTVRKTRRTLD
>Mature_370_residues
MNLRRLAALCCKESYQIVRDPSSILIAFILPVALLFILGYAVNLDSAHIRLGLLDLDGGGAAQRLAATLYATPALDVRPL
HSRPELEEKLAHGKIRGALVIQNGFSRDWANRRGAVQLLTDGAEPNTANFVAAYAQGAWLRWQQAEGDERAQSAAPAIDI
RQRFWFNPSAESPNFLVPGTIAIVMTIVGALLSSLVVAREWERGTMEALLATPVSRAELLLSKILPYYVLGIAAMLLCLL
VAVFVMRVPFRGPLWLLWLMSSLFLANALGMGLFLSTVMRTQFDAAQAALTAGYLPALMLSGFVFEISSMPAPLQWLTRI
LPARYFASTLQTLFQAGVIPSLLWFNAASLILLGAFWLGQTVRKTRRTLD

Specific function: Unknown

COG id: COG0842

COG function: function code V; ABC-type multidrug transport system, permease component

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-2 domain [H]

Homologues:

Organism=Escherichia coli, GI1787011, Length=369, Percent_Identity=52.5745257452574, Blast_Score=390, Evalue=1e-109,
Organism=Escherichia coli, GI48994943, Length=351, Percent_Identity=31.3390313390313, Blast_Score=164, Evalue=9e-42,
Organism=Escherichia coli, GI1787010, Length=362, Percent_Identity=28.4530386740331, Blast_Score=130, Evalue=1e-31,
Organism=Escherichia coli, GI226510979, Length=326, Percent_Identity=25.1533742331288, Blast_Score=77, Evalue=2e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000412
- InterPro:   IPR013525 [H]

Pfam domain/function: PF01061 ABC2_membrane [H]

EC number: NA

Molecular weight: Translated: 40582; Mature: 40582

Theoretical pI: Translated: 9.81; Mature: 9.81

Prosite motif: PS51012 ABC_TM2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNLRRLAALCCKESYQIVRDPSSILIAFILPVALLFILGYAVNLDSAHIRLGLLDLDGGG
CCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEECCCC
AAQRLAATLYATPALDVRPLHSRPELEEKLAHGKIRGALVIQNGFSRDWANRRGAVQLLT
HHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHCCCCCEEEEEECCCCHHHHCCCCCEEEEE
DGAEPNTANFVAAYAQGAWLRWQQAEGDERAQSAAPAIDIRQRFWFNPSAESPNFLVPGT
CCCCCCCHHHHHHHHCCCEEEECCCCCHHHHHHCCCHHHHHHHHCCCCCCCCCCEECCHH
IAIVMTIVGALLSSLVVAREWERGTMEALLATPVSRAELLLSKILPYYVLGIAAMLLCLL
HHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
VAVFVMRVPFRGPLWLLWLMSSLFLANALGMGLFLSTVMRTQFDAAQAALTAGYLPALML
HHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
SGFVFEISSMPAPLQWLTRILPARYFASTLQTLFQAGVIPSLLWFNAASLILLGAFWLGQ
HHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
TVRKTRRTLD
HHHHHHHCCC
>Mature Secondary Structure
MNLRRLAALCCKESYQIVRDPSSILIAFILPVALLFILGYAVNLDSAHIRLGLLDLDGGG
CCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEECCCC
AAQRLAATLYATPALDVRPLHSRPELEEKLAHGKIRGALVIQNGFSRDWANRRGAVQLLT
HHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHCCCCCEEEEEECCCCHHHHCCCCCEEEEE
DGAEPNTANFVAAYAQGAWLRWQQAEGDERAQSAAPAIDIRQRFWFNPSAESPNFLVPGT
CCCCCCCHHHHHHHHCCCEEEECCCCCHHHHHHCCCHHHHHHHHCCCCCCCCCCEECCHH
IAIVMTIVGALLSSLVVAREWERGTMEALLATPVSRAELLLSKILPYYVLGIAAMLLCLL
HHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
VAVFVMRVPFRGPLWLLWLMSSLFLANALGMGLFLSTVMRTQFDAAQAALTAGYLPALML
HHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
SGFVFEISSMPAPLQWLTRILPARYFASTLQTLFQAGVIPSLLWFNAASLILLGAFWLGQ
HHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
TVRKTRRTLD
HHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]