Click here to switch to the map view.

The map label for this gene is ygfZ [C]

Identifier: 339905963

GI number: 339905963

Start: 1519011

End: 1520042

Strand: Reverse

Name: ygfZ [C]

Synonym: NA

Alternate gene names: 339905963

Gene position: 1520042-1519011 (Counterclockwise)

Preceding gene: 238027009

Following gene: 238026998

Centisome position: 38.91

GC content: 71.9

Gene sequence:

>1032_bases
ATGAACTCACCGATTGCCAACGGCGCATCGCCCGCCCCGCCCGAATTCGCGCGCCCGCAGGCGGCCGAATTCGAGGCCGT
CCAAACGCGCGGTGCCTATATGCCCCTGCCCCAGCTCGGCCTGATCGAGGTGGCCGGCGACGACGCCGCGACCTTCCTGC
ACAGCCAACTGACCAACGACATCGAGCAGCTCGACGCCGCCGGCGTGAAGCTGGCCGGCTACTGCTCGCCCAAGGGCCGG
CTGCTCGCCTCGTTCCTGGCCTGGCGCACGGCCGACGGCGTGCAGCTGCTGCTGTCCGCGGAGCTCCAGCCCGCCGTGCA
GAAGCGCCTGTCGATGTTCGTGCTGCGCGCCAAGGCGAAATTGAGCGACGCGGGCGCCGAATGGGTCGCGCTCGGCCTCG
CGGGCGACGTTCGCGAGGCGCTCTCGGGACGCTTCGACGCGCTGCCCGACGGCGTGCACACCAAGCTCGACGGCCCGGCC
GGCACGCTGATCCGGCTGCCCGACGCGGCCGGCCGGCCGCGCTATCTGTGGATCGCGCGCCGTGCGCACGCCGAGGCGCA
CGCGGCCGAACTCGACGCGAAACTCGCGCGCGTGTCGCCGGCGGTCTGGAACTGGCTGGAAATCCGCGCCGCCGAACCGC
GCATCACCCAGCCGGTGGTCGAGCAATTCGTGCCGCAGATGGTCAACTACGACGTGATCGGCGCGATCAATTTCCGCAAG
GGCTGCTATCCGGGACAGGAGATCGTGGCGCGCAGCCAGTATCGCGGCACCATCAAGCGCCGCACCGCGCTCGCGCACGT
GGCGGGCGACACCGCCGAGGTACGAGCCGGCGTCGAGCTGTTCCACAGCGCCGATCCGGGCCAGCCGTGCGGGCTGGTCG
TCAATGCGGCGGCCGCGCCCGGCGGCGGCGTGGACCTGCTGGCCGAGGTCAAGCTCGCCGCGCAGGAAGGCGGCAGCGTT
CACCTCGGCAGCGCCGACGGTGCGCCGCTCGCGTTCCTGCCGCTGCCCTACGCCTTGCCCACCGAAGTCTGA

Upstream 100 bases:
NA

Downstream 100 bases:
NA

Product: glycine cleavage T protein (aminomethyl transferase)

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 343; Mature: 343

Protein sequence:
NA

Sequences:

>Translated_343_residues
MNSPIANGASPAPPEFARPQAAEFEAVQTRGAYMPLPQLGLIEVAGDDAATFLHSQLTNDIEQLDAAGVKLAGYCSPKGR
LLASFLAWRTADGVQLLLSAELQPAVQKRLSMFVLRAKAKLSDAGAEWVALGLAGDVREALSGRFDALPDGVHTKLDGPA
GTLIRLPDAAGRPRYLWIARRAHAEAHAAELDAKLARVSPAVWNWLEIRAAEPRITQPVVEQFVPQMVNYDVIGAINFRK
GCYPGQEIVARSQYRGTIKRRTALAHVAGDTAEVRAGVELFHSADPGQPCGLVVNAAAAPGGGVDLLAEVKLAAQEGGSV
HLGSADGAPLAFLPLPYALPTEV
>Mature_343_residues
MNSPIANGASPAPPEFARPQAAEFEAVQTRGAYMPLPQLGLIEVAGDDAATFLHSQLTNDIEQLDAAGVKLAGYCSPKGR
LLASFLAWRTADGVQLLLSAELQPAVQKRLSMFVLRAKAKLSDAGAEWVALGLAGDVREALSGRFDALPDGVHTKLDGPA
GTLIRLPDAAGRPRYLWIARRAHAEAHAAELDAKLARVSPAVWNWLEIRAAEPRITQPVVEQFVPQMVNYDVIGAINFRK
GCYPGQEIVARSQYRGTIKRRTALAHVAGDTAEVRAGVELFHSADPGQPCGLVVNAAAAPGGGVDLLAEVKLAAQEGGSV
HLGSADGAPLAFLPLPYALPTEV

Specific function: Folate-binding protein involved in regulating the level of ATP-dnaA and in the modification of some tRNAs. It is probably a key factor in regulatory networks that act via tRNA modification, such as initiation of chromosomal replication [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the tRNA-modifying ygfZ family [H]

Homologues:

Organism=Escherichia coli, GI1789265, Length=309, Percent_Identity=28.8025889967638, Blast_Score=102, Evalue=3e-23,

Paralogues:

None

Copy number: 40 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017703
- InterPro:   IPR006222 [H]

Pfam domain/function: PF01571 GCV_T [H]

EC number: NA

Molecular weight: Translated: 36234; Mature: 36234

Theoretical pI: Translated: 6.40; Mature: 6.40

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNSPIANGASPAPPEFARPQAAEFEAVQTRGAYMPLPQLGLIEVAGDDAATFLHSQLTND
CCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCEEEECCCHHHHHHHHHHHHH
IEQLDAAGVKLAGYCSPKGRLLASFLAWRTADGVQLLLSAELQPAVQKRLSMFVLRAKAK
HHHHHHCCCEEEEEECCCHHHHHHHHHHHCCCCCEEEHHHHCCHHHHHHHHHHHHHHHHH
LSDAGAEWVALGLAGDVREALSGRFDALPDGVHTKLDGPAGTLIRLPDAAGRPRYLWIAR
HCCCCCCEEEEECCHHHHHHHCCCCCCCCCCCCEECCCCCCCEEECCCCCCCCCEEEEEE
RAHAEAHAAELDAKLARVSPAVWNWLEIRAAEPRITQPVVEQFVPQMVNYDVIGAINFRK
HHHHHHHHHHHHHHHHHCCHHHHCEEEEEECCCCCCHHHHHHHHHHHHCCCEEEEEECCC
GCYPGQEIVARSQYRGTIKRRTALAHVAGDTAEVRAGVELFHSADPGQPCGLVVNAAAAP
CCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCCEEEECCCCC
GGGVDLLAEVKLAAQEGGSVHLGSADGAPLAFLPLPYALPTEV
CCCHHHHHHHHHHHCCCCEEEECCCCCCCEEEECCCCCCCCCC
>Mature Secondary Structure
MNSPIANGASPAPPEFARPQAAEFEAVQTRGAYMPLPQLGLIEVAGDDAATFLHSQLTND
CCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCEEEECCCHHHHHHHHHHHHH
IEQLDAAGVKLAGYCSPKGRLLASFLAWRTADGVQLLLSAELQPAVQKRLSMFVLRAKAK
HHHHHHCCCEEEEEECCCHHHHHHHHHHHCCCCCEEEHHHHCCHHHHHHHHHHHHHHHHH
LSDAGAEWVALGLAGDVREALSGRFDALPDGVHTKLDGPAGTLIRLPDAAGRPRYLWIAR
HCCCCCCEEEEECCHHHHHHHCCCCCCCCCCCCEECCCCCCCEEECCCCCCCCCEEEEEE
RAHAEAHAAELDAKLARVSPAVWNWLEIRAAEPRITQPVVEQFVPQMVNYDVIGAINFRK
HHHHHHHHHHHHHHHHHCCHHHHCEEEEEECCCCCCHHHHHHHHHHHHCCCEEEEEECCC
GCYPGQEIVARSQYRGTIKRRTALAHVAGDTAEVRAGVELFHSADPGQPCGLVVNAAAAP
CCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCCEEEECCCCC
GGGVDLLAEVKLAAQEGGSVHLGSADGAPLAFLPLPYALPTEV
CCCHHHHHHHHHHHCCCCEEEECCCCCCCEEEECCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA