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The map label for this gene is ycf4 [H]

Identifier: 33863448

GI number: 33863448

Start: 1268976

End: 1269551

Strand: Reverse

Name: ycf4 [H]

Synonym: PMT1178

Alternate gene names: 33863448

Gene position: 1269551-1268976 (Counterclockwise)

Preceding gene: 33863451

Following gene: 33863447

Centisome position: 52.66

GC content: 53.82

Gene sequence:

>576_bases
ATGTCAGCTGATCTCCAGGAAACCCCTAAGGCCGGAGATGCTTCTCTGGAGCGGCTTGAGCAATCGGTTCTCGGTTTTCG
ACGTCTCTCCAATCAGCTCTTGGCCGTCATCGTCACAATCGGCGGCCTTGGCTTCACACTGACTTGTCTGTCTAGTTATT
TGGGGCGAGATCTTCTTCCCATCGGCAGTCCTTCGACTCTCCTATTCGTGCCTCAGGGCTTGGTGATGGGTCTCTATGGC
ATAGCAGGTTTGCTGCTTGCGAGTTACCTCTGGGCGATGATCAACATCAATTTGGGTGCAGGTAGCAACAACTTTGACAA
GGCTTCCGGGATGGTGAAAATTTGCCGTCGCGGATATTTCAAGCTGATCAGCGCGGAGTTCCCCCTCAAGGATGTCAAAG
CCGTCAAGGTTGAGGTACGTGATGGTTTCAATCCCCTTCGCCGCTTGTCCTTGCGGGTTCAAGGTCGGCGAGACATCACT
CTTACCCGCGTCGGTCAGCCTCTCCCCCTCGCACAGTTAGAACAGGATGGTGCTGAGCTAGCGCGTTTTCTTGACGTGAA
TCTTGAAGGGCTCTGA

Upstream 100 bases:

>100_bases
GAGCTGAAACCCCTTGTAGTGGTGTTGCTCCTTTGGCTTGCTTCAAATCTGCCCGTTGTGGGCTGTAGCAGTCCAGAATG
GAGATTCATATTGGGTAGTC

Downstream 100 bases:

>100_bases
ATTTTGTTGCTCTCATCCCTTGCGCGTTTGATTCGGCGTCAAAACATCTGGGGAATTCTGCTTTGTGTGCCCTTATTGGT
TGGCTGCAGCAAGTCCACTA

Product: photosystem I assembly protein Ycf4

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 191; Mature: 190

Protein sequence:

>191_residues
MSADLQETPKAGDASLERLEQSVLGFRRLSNQLLAVIVTIGGLGFTLTCLSSYLGRDLLPIGSPSTLLFVPQGLVMGLYG
IAGLLLASYLWAMININLGAGSNNFDKASGMVKICRRGYFKLISAEFPLKDVKAVKVEVRDGFNPLRRLSLRVQGRRDIT
LTRVGQPLPLAQLEQDGAELARFLDVNLEGL

Sequences:

>Translated_191_residues
MSADLQETPKAGDASLERLEQSVLGFRRLSNQLLAVIVTIGGLGFTLTCLSSYLGRDLLPIGSPSTLLFVPQGLVMGLYG
IAGLLLASYLWAMININLGAGSNNFDKASGMVKICRRGYFKLISAEFPLKDVKAVKVEVRDGFNPLRRLSLRVQGRRDIT
LTRVGQPLPLAQLEQDGAELARFLDVNLEGL
>Mature_190_residues
SADLQETPKAGDASLERLEQSVLGFRRLSNQLLAVIVTIGGLGFTLTCLSSYLGRDLLPIGSPSTLLFVPQGLVMGLYGI
AGLLLASYLWAMININLGAGSNNFDKASGMVKICRRGYFKLISAEFPLKDVKAVKVEVRDGFNPLRRLSLRVQGRRDITL
TRVGQPLPLAQLEQDGAELARFLDVNLEGL

Specific function: Seems to be required for the assembly of the photosystem I complex [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cellular thylakoid membrane; Multi-pass membrane protein [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ycf4 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003359
- ProDom:   PD003698 [H]

Pfam domain/function: PF02392 Ycf4 [H]

EC number: NA

Molecular weight: Translated: 20763; Mature: 20631

Theoretical pI: Translated: 9.55; Mature: 9.55

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSADLQETPKAGDASLERLEQSVLGFRRLSNQLLAVIVTIGGLGFTLTCLSSYLGRDLLP
CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCC
IGSPSTLLFVPQGLVMGLYGIAGLLLASYLWAMININLGAGSNNFDKASGMVKICRRGYF
CCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCCCHHHHHHHHHHHHHHH
KLISAEFPLKDVKAVKVEVRDGFNPLRRLSLRVQGRRDITLTRVGQPLPLAQLEQDGAEL
HHHCCCCCCCHHHEEEEEECCCCCHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHH
ARFLDVNLEGL
HHHHHCCCCCC
>Mature Secondary Structure 
SADLQETPKAGDASLERLEQSVLGFRRLSNQLLAVIVTIGGLGFTLTCLSSYLGRDLLP
CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCC
IGSPSTLLFVPQGLVMGLYGIAGLLLASYLWAMININLGAGSNNFDKASGMVKICRRGYF
CCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCCCHHHHHHHHHHHHHHH
KLISAEFPLKDVKAVKVEVRDGFNPLRRLSLRVQGRRDITLTRVGQPLPLAQLEQDGAEL
HHHCCCCCCCHHHEEEEEECCCCCHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHH
ARFLDVNLEGL
HHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA