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The map label for this gene is yocR [H]

Identifier: 33863430

GI number: 33863430

Start: 1251952

End: 1253283

Strand: Reverse

Name: yocR [H]

Synonym: PMT1160

Alternate gene names: 33863430

Gene position: 1253283-1251952 (Counterclockwise)

Preceding gene: 33863433

Following gene: 33863425

Centisome position: 51.98

GC content: 55.48

Gene sequence:

>1332_bases
ATGGCAGTTCGGGAACATTGGCGATCGGGCGTGGGCTTTGTGCTTGCCGCTGCAGGCAGTGCCGTGGGGCTTGGCAATCT
CTGGGGCTTCGCCTATCGATCCTCTCAGGGGGGTGGGGCGGCTTTTCTGCTCCTCTATGTCGTGATTGTGTTGGTGGTTT
GCCTGCCGGTGTTGATTGCCGAGATGGTGCTTGGCCGCAGTACGGGCAAAAGCCCTCTGCTAGCACCGGTTGCAGCAGCT
GGGGCCCGTTGGCAACCGATGGGCTGGCTGTTTGTGATTGCCCCTTGCGGAATTTTGGCTTTTTATGCAGTGTTGATGGG
TTGGACCGGTCACACCCTGTTTCATGCCCTGTTGGTGGGTTTGCCCGCTGACATGACGGAGGCGGAGAGCTTCTTCGGCG
TCGTGAGCAAGGGCAGCAATGCCCTATGGGGGCAGATGGTCAGCTTGGTGCTTACTGCTTTGGTTGTGGCAGCCGGTGTT
CGTGGTGGTATTGAGCGCCTCTCTCGCTGGGGGCTGCCTTTGCTTTTTTTGTTGCTGATTGCACTGGCGTGTTGGGCGTC
CACTCTCGAGGGAGCCTTGCAGGGCTATCACACCTTCCTGTTCCGCTGGGACGCTGATCAATTGTTCAATACCACGACGG
TGCGCAACGCCTTTAATCAAGCCTTCTTTTCAATTGGCACTGGTATTGGCTGCATCCTTGCCTATGCAGCCTATTTGGAT
CGCCGCAATCACCTGCCTCGCGAAGCGGTAGCAGTGGTGAGCATGGATACAGCCGTGGGTTTGTTGGCAGGGATGATCAC
CTTCCCAGTGGTGATGACATTTGCTCTCAAGGATGTGATCAGCGATTCCACCGTTGGAGCCTTATTCATTTCTATCCCTA
CGGGGTTGGCTTCTCTCGGAGACACTGGTCGTGTTGTGGCTGTGCTTTTTTTCGCGCTTGCTTACATCGCTGCGATCACC
TCTGCGGTGTCTTTGCTTGAGGTGCCTGTGGCTTGCTTGATCGATCGCTTTGGTTGCAGCCGTATTCGGGCGGTATGGCT
TTCTGTAGCAGTGATTTTTGTGCTCGGTCTGCCGGCGGCTACATCAACGGATGTTCTCGGCTGGATGGATTCTTTGCTGA
ATCTATTGTTAATTCTTGGCGGATTACTGCTGGCTCTTTTGTTGGGTTGGGTGGTGCCCCGTCGCTTCAAGGAGGATCTC
GCTGGTTGTGAGACACCATTTGGGTTAAGTCGCTTGTTGCTGTTCATGCTGCGTTGGGTGTCACCACCTGTTGTGGCCTT
TGGTTTGATCGTTAGCGTCGTGGATCTGCTGCAGACATGGACTGGGACCTGA

Upstream 100 bases:

>100_bases
CCAGCACGCTGATGGCTTTCACACTGTTCCGGCAGTTGAAGCCAGTCTCCCACTAGATGGCCAGACACTGGCAAGCTTGT
CTTAACAAGGAGCTCCAGTC

Downstream 100 bases:

>100_bases
TCAAGCGTTCACGGTTGGGGCTCATGGACTCAGTTCTCTAAAGCAGAGGTGGGCATTGTCGATTTGGCTGAAGCGTTTGT
ATCCCTAGAGCTGGCGAAGC

Product: sodium-dependent transporter

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 443; Mature: 442

Protein sequence:

>443_residues
MAVREHWRSGVGFVLAAAGSAVGLGNLWGFAYRSSQGGGAAFLLLYVVIVLVVCLPVLIAEMVLGRSTGKSPLLAPVAAA
GARWQPMGWLFVIAPCGILAFYAVLMGWTGHTLFHALLVGLPADMTEAESFFGVVSKGSNALWGQMVSLVLTALVVAAGV
RGGIERLSRWGLPLLFLLLIALACWASTLEGALQGYHTFLFRWDADQLFNTTTVRNAFNQAFFSIGTGIGCILAYAAYLD
RRNHLPREAVAVVSMDTAVGLLAGMITFPVVMTFALKDVISDSTVGALFISIPTGLASLGDTGRVVAVLFFALAYIAAIT
SAVSLLEVPVACLIDRFGCSRIRAVWLSVAVIFVLGLPAATSTDVLGWMDSLLNLLLILGGLLLALLLGWVVPRRFKEDL
AGCETPFGLSRLLLFMLRWVSPPVVAFGLIVSVVDLLQTWTGT

Sequences:

>Translated_443_residues
MAVREHWRSGVGFVLAAAGSAVGLGNLWGFAYRSSQGGGAAFLLLYVVIVLVVCLPVLIAEMVLGRSTGKSPLLAPVAAA
GARWQPMGWLFVIAPCGILAFYAVLMGWTGHTLFHALLVGLPADMTEAESFFGVVSKGSNALWGQMVSLVLTALVVAAGV
RGGIERLSRWGLPLLFLLLIALACWASTLEGALQGYHTFLFRWDADQLFNTTTVRNAFNQAFFSIGTGIGCILAYAAYLD
RRNHLPREAVAVVSMDTAVGLLAGMITFPVVMTFALKDVISDSTVGALFISIPTGLASLGDTGRVVAVLFFALAYIAAIT
SAVSLLEVPVACLIDRFGCSRIRAVWLSVAVIFVLGLPAATSTDVLGWMDSLLNLLLILGGLLLALLLGWVVPRRFKEDL
AGCETPFGLSRLLLFMLRWVSPPVVAFGLIVSVVDLLQTWTGT
>Mature_442_residues
AVREHWRSGVGFVLAAAGSAVGLGNLWGFAYRSSQGGGAAFLLLYVVIVLVVCLPVLIAEMVLGRSTGKSPLLAPVAAAG
ARWQPMGWLFVIAPCGILAFYAVLMGWTGHTLFHALLVGLPADMTEAESFFGVVSKGSNALWGQMVSLVLTALVVAAGVR
GGIERLSRWGLPLLFLLLIALACWASTLEGALQGYHTFLFRWDADQLFNTTTVRNAFNQAFFSIGTGIGCILAYAAYLDR
RNHLPREAVAVVSMDTAVGLLAGMITFPVVMTFALKDVISDSTVGALFISIPTGLASLGDTGRVVAVLFFALAYIAAITS
AVSLLEVPVACLIDRFGCSRIRAVWLSVAVIFVLGLPAATSTDVLGWMDSLLNLLLILGGLLLALLLGWVVPRRFKEDLA
GCETPFGLSRLLLFMLRWVSPPVVAFGLIVSVVDLLQTWTGT

Specific function: Putative sodium-dependent transporter [H]

COG id: COG0733

COG function: function code R; Na+-dependent transporters of the SNF family

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sodium:neurotransmitter symporter (SNF) (TC 2.A.22) family [H]

Homologues:

Organism=Homo sapiens, GI289191351, Length=492, Percent_Identity=24.390243902439, Blast_Score=90, Evalue=4e-18,
Organism=Homo sapiens, GI4557046, Length=492, Percent_Identity=24.390243902439, Blast_Score=90, Evalue=4e-18,
Organism=Homo sapiens, GI289191377, Length=492, Percent_Identity=24.390243902439, Blast_Score=90, Evalue=4e-18,
Organism=Homo sapiens, GI4507041, Length=498, Percent_Identity=25.1004016064257, Blast_Score=89, Evalue=6e-18,
Organism=Homo sapiens, GI21361581, Length=378, Percent_Identity=23.2804232804233, Blast_Score=89, Evalue=9e-18,
Organism=Homo sapiens, GI171184408, Length=379, Percent_Identity=23.4828496042216, Blast_Score=82, Evalue=7e-16,
Organism=Homo sapiens, GI171184406, Length=379, Percent_Identity=23.4828496042216, Blast_Score=82, Evalue=7e-16,
Organism=Homo sapiens, GI171184404, Length=379, Percent_Identity=23.4828496042216, Blast_Score=82, Evalue=7e-16,
Organism=Homo sapiens, GI58219014, Length=303, Percent_Identity=23.4323432343234, Blast_Score=82, Evalue=1e-15,
Organism=Homo sapiens, GI12408638, Length=278, Percent_Identity=25.8992805755396, Blast_Score=79, Evalue=7e-15,
Organism=Homo sapiens, GI7657587, Length=384, Percent_Identity=23.4375, Blast_Score=79, Evalue=1e-14,
Organism=Homo sapiens, GI197276623, Length=346, Percent_Identity=22.2543352601156, Blast_Score=69, Evalue=6e-12,
Organism=Homo sapiens, GI54607094, Length=346, Percent_Identity=22.2543352601156, Blast_Score=69, Evalue=6e-12,
Organism=Homo sapiens, GI194018524, Length=317, Percent_Identity=24.6056782334385, Blast_Score=69, Evalue=1e-11,
Organism=Homo sapiens, GI197276625, Length=124, Percent_Identity=31.4516129032258, Blast_Score=67, Evalue=3e-11,
Organism=Caenorhabditis elegans, GI17554804, Length=408, Percent_Identity=27.9411764705882, Blast_Score=101, Evalue=9e-22,
Organism=Caenorhabditis elegans, GI17555248, Length=456, Percent_Identity=23.0263157894737, Blast_Score=91, Evalue=9e-19,
Organism=Caenorhabditis elegans, GI17569475, Length=414, Percent_Identity=26.8115942028986, Blast_Score=82, Evalue=7e-16,
Organism=Caenorhabditis elegans, GI212642127, Length=271, Percent_Identity=25.4612546125461, Blast_Score=67, Evalue=2e-11,
Organism=Caenorhabditis elegans, GI71998244, Length=198, Percent_Identity=28.7878787878788, Blast_Score=65, Evalue=6e-11,
Organism=Drosophila melanogaster, GI17136952, Length=378, Percent_Identity=26.1904761904762, Blast_Score=118, Evalue=9e-27,
Organism=Drosophila melanogaster, GI281364394, Length=378, Percent_Identity=26.1904761904762, Blast_Score=115, Evalue=7e-26,
Organism=Drosophila melanogaster, GI28574704, Length=378, Percent_Identity=26.1904761904762, Blast_Score=115, Evalue=7e-26,
Organism=Drosophila melanogaster, GI17136950, Length=378, Percent_Identity=26.1904761904762, Blast_Score=115, Evalue=7e-26,
Organism=Drosophila melanogaster, GI28574702, Length=378, Percent_Identity=26.1904761904762, Blast_Score=115, Evalue=7e-26,
Organism=Drosophila melanogaster, GI24661428, Length=406, Percent_Identity=27.0935960591133, Blast_Score=108, Evalue=7e-24,
Organism=Drosophila melanogaster, GI24582567, Length=446, Percent_Identity=24.4394618834081, Blast_Score=105, Evalue=7e-23,
Organism=Drosophila melanogaster, GI281363702, Length=462, Percent_Identity=25.974025974026, Blast_Score=103, Evalue=3e-22,
Organism=Drosophila melanogaster, GI24652942, Length=379, Percent_Identity=25.8575197889182, Blast_Score=103, Evalue=3e-22,
Organism=Drosophila melanogaster, GI45551088, Length=379, Percent_Identity=25.8575197889182, Blast_Score=102, Evalue=4e-22,
Organism=Drosophila melanogaster, GI19921936, Length=438, Percent_Identity=24.8858447488584, Blast_Score=100, Evalue=2e-21,
Organism=Drosophila melanogaster, GI281365034, Length=450, Percent_Identity=25.3333333333333, Blast_Score=94, Evalue=2e-19,
Organism=Drosophila melanogaster, GI19921352, Length=465, Percent_Identity=23.6559139784946, Blast_Score=91, Evalue=2e-18,
Organism=Drosophila melanogaster, GI24584353, Length=465, Percent_Identity=23.6559139784946, Blast_Score=91, Evalue=2e-18,
Organism=Drosophila melanogaster, GI24762620, Length=424, Percent_Identity=25.2358490566038, Blast_Score=90, Evalue=3e-18,
Organism=Drosophila melanogaster, GI45550877, Length=401, Percent_Identity=21.9451371571072, Blast_Score=87, Evalue=3e-17,
Organism=Drosophila melanogaster, GI45551183, Length=451, Percent_Identity=21.5077605321508, Blast_Score=86, Evalue=4e-17,
Organism=Drosophila melanogaster, GI281364136, Length=478, Percent_Identity=23.4309623430962, Blast_Score=79, Evalue=8e-15,
Organism=Drosophila melanogaster, GI24582569, Length=410, Percent_Identity=22.6829268292683, Blast_Score=70, Evalue=4e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000175 [H]

Pfam domain/function: PF00209 SNF [H]

EC number: NA

Molecular weight: Translated: 47123; Mature: 46991

Theoretical pI: Translated: 8.05; Mature: 8.05

Prosite motif: PS50267 NA_NEUROTRAN_SYMP_3

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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CCHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
AVREHWRSGVGFVLAAAGSAVGLGNLWGFAYRSSQGGGAAFLLLYVVIVLVVCLPVLIA
CCHHHHHCCCCHHHHHCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHH
EMVLGRSTGKSPLLAPVAAAGARWQPMGWLFVIAPCGILAFYAVLMGWTGHTLFHALLVG
HHHHCCCCCCCCCHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHC
LPADMTEAESFFGVVSKGSNALWGQMVSLVLTALVVAAGVRGGIERLSRWGLPLLFLLLI
CCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHH
ALACWASTLEGALQGYHTFLFRWDADQLFNTTTVRNAFNQAFFSIGTGIGCILAYAAYLD
HHHHHHHHHHHHHHHHHHHHEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RRNHLPREAVAVVSMDTAVGLLAGMITFPVVMTFALKDVISDSTVGALFISIPTGLASLG
HHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHEEEECCHHHHHCC
DTGRVVAVLFFALAYIAAITSAVSLLEVPVACLIDRFGCSRIRAVWLSVAVIFVLGLPAA
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
TSTDVLGWMDSLLNLLLILGGLLLALLLGWVVPRRFKEDLAGCETPFGLSRLLLFMLRWV
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHC
SPPVVAFGLIVSVVDLLQTWTGT
CCHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]