| Definition | Prochlorococcus marinus str. MIT 9313 chromosome, complete genome. |
|---|---|
| Accession | NC_005071 |
| Length | 2,410,873 |
Click here to switch to the map view.
The map label for this gene is 33863344
Identifier: 33863344
GI number: 33863344
Start: 1159129
End: 1159665
Strand: Reverse
Name: 33863344
Synonym: PMT1073
Alternate gene names: NA
Gene position: 1159665-1159129 (Counterclockwise)
Preceding gene: 33863347
Following gene: 33863342
Centisome position: 48.1
GC content: 57.73
Gene sequence:
>537_bases ATGATTGCTCCCATCCCTTTTCTGGTTGGTGCTGGCCCCCTCCCTGATGCTCGGATGCGGGCTGGTTGCTTGCTTTTGGC TAGCGCTTGGGGAGTTGAGTTGAGCCATCATCGCTGTTCTGAAAATCCCCATCAGGTTCTTGGTTTGTTGCTTGCGGAGG TGGGAATGGTGCAACTGAGTGGTGACCCAGCCATGTTTCATCCAGATGGTGGTAGCTGGCTGGAGGCTCTGGGAGCATGG CGCCAGCCCACCATTTTGATGGTGTCGCCTTTGCCCTCTGGGGAGATTCCTGGAGTGGCACCTGCTTATGTAGCGCTCTG TGCGGCCCTCAATGTTCCTTTGATTGGGGTTCTGCAATTGGGTGGCCAATGGGACCTCAGCCTTCGCCGCTCGGATGGTT TGCCGTGGTTCGGTTTGCTTCCAGATGATCCCTCAGCTTTGTCAGCAGTCCCTAATGCGGGCGGCTTGCAGCAGGGGCCC TCTTTGGAGGAGCTCGTGGTGCAATTGCGTCGACGGCTGCTGCTGTCGCCCGATTGA
Upstream 100 bases:
>100_bases AGAAAACTCGTCACGTCGCCAGCGAGCAATATCAGCTGTACTCCGATGCTAGTGCTGCAAAGGCTCCCATCTCAACTTCT TCTCTATGTAGGGTCGCCTG
Downstream 100 bases:
>100_bases TGAGGCCCTGTTAGTTGCCCTGCGGCCAGAGCGGCATGGGGTGGCTTGCTTTCAGTTGCCGCAGGGTTTGTTCCCCGGCT CGTGGGGCTAGAGGTAATTC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 178; Mature: 178
Protein sequence:
>178_residues MIAPIPFLVGAGPLPDARMRAGCLLLASAWGVELSHHRCSENPHQVLGLLLAEVGMVQLSGDPAMFHPDGGSWLEALGAW RQPTILMVSPLPSGEIPGVAPAYVALCAALNVPLIGVLQLGGQWDLSLRRSDGLPWFGLLPDDPSALSAVPNAGGLQQGP SLEELVVQLRRRLLLSPD
Sequences:
>Translated_178_residues MIAPIPFLVGAGPLPDARMRAGCLLLASAWGVELSHHRCSENPHQVLGLLLAEVGMVQLSGDPAMFHPDGGSWLEALGAW RQPTILMVSPLPSGEIPGVAPAYVALCAALNVPLIGVLQLGGQWDLSLRRSDGLPWFGLLPDDPSALSAVPNAGGLQQGP SLEELVVQLRRRLLLSPD >Mature_178_residues MIAPIPFLVGAGPLPDARMRAGCLLLASAWGVELSHHRCSENPHQVLGLLLAEVGMVQLSGDPAMFHPDGGSWLEALGAW RQPTILMVSPLPSGEIPGVAPAYVALCAALNVPLIGVLQLGGQWDLSLRRSDGLPWFGLLPDDPSALSAVPNAGGLQQGP SLEELVVQLRRRLLLSPD
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 18753; Mature: 18753
Theoretical pI: Translated: 4.81; Mature: 4.81
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.7 %Cys (Translated Protein) 2.8 %Met (Translated Protein) 4.5 %Cys+Met (Translated Protein) 1.7 %Cys (Mature Protein) 2.8 %Met (Mature Protein) 4.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MIAPIPFLVGAGPLPDARMRAGCLLLASAWGVELSHHRCSENPHQVLGLLLAEVGMVQLS CCCCCCCEECCCCCCHHHHHHHHHEEEHHCCCCCHHHHCCCCHHHHHHHHHHHHCEEEEC GDPAMFHPDGGSWLEALGAWRQPTILMVSPLPSGEIPGVAPAYVALCAALNVPLIGVLQL CCCCEEECCCCHHHHHHCCCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHCCCEEEEEEC GGQWDLSLRRSDGLPWFGLLPDDPSALSAVPNAGGLQQGPSLEELVVQLRRRLLLSPD CCCCCEEEECCCCCCEEEECCCCCHHHHCCCCCCCCCCCCCHHHHHHHHHHHHCCCCC >Mature Secondary Structure MIAPIPFLVGAGPLPDARMRAGCLLLASAWGVELSHHRCSENPHQVLGLLLAEVGMVQLS CCCCCCCEECCCCCCHHHHHHHHHEEEHHCCCCCHHHHCCCCHHHHHHHHHHHHCEEEEC GDPAMFHPDGGSWLEALGAWRQPTILMVSPLPSGEIPGVAPAYVALCAALNVPLIGVLQL CCCCEEECCCCHHHHHHCCCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHCCCEEEEEEC GGQWDLSLRRSDGLPWFGLLPDDPSALSAVPNAGGLQQGPSLEELVVQLRRRLLLSPD CCCCCEEEECCCCCCEEEECCCCCHHHHCCCCCCCCCCCCCHHHHHHHHHHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA