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The map label for this gene is lptC

Identifier: 30995426

GI number: 30995426

Start: 1218171

End: 1218785

Strand: Reverse

Name: lptC

Synonym: HI1150

Alternate gene names: 30995426

Gene position: 1218785-1218171 (Counterclockwise)

Preceding gene: 16273076

Following gene: 16273644

Centisome position: 66.6

GC content: 33.98

Gene sequence:

>615_bases
ATGAATATTCGTTGGAATGTAATTTTGGGCGTTATCGCACTTTGTGCTTTGGCGTGGTTTTATTCCTTAAATCAGGAAAC
CGCAGATTTATCTGAACTTGTGAAAAAGCCAGATAGTCCTGATTATGTGGGTTATAAAATGGAAACTACGGTTTTTTCCC
CTGATGGTAAAAAACAATATTTGGCTTTATCCGATAAAATTGAGCATTATACAGTCAATGAACAAACCCTTTTTACCGCG
CCTTTAGTTTATTTATATCCCACAACATCAAATGAAAAGGAAAAGGAAAAAAATGCCAATCAAAATGTAGATTTTTTTAG
CACACAAAGCTGGAAATTAAGCGCAAATCAAGCAAGATTGACAAAAGATCAAATATTGTATTTAGAGGGTAATGTCGTCG
CGCAAAATTTAACATCAGATTCACGTTTGCAACGCATTGAAACAGAATCAGCGGTCGTCAATTTGAAAACACAGGATATA
ACTTCCGAAACACAGGTTAAAATTAAGGGTAAAAATTTTAGTTCTACAGGATTAAAATTAGTCGGAAATTTACGCCAACA
AGTGGCGACATTAAAGGAACAGGTAAAAACATATTATGAAGTTAGTAAGCAATAA

Upstream 100 bases:

>100_bases
CCTATCGAGAAATTTATCAAATGCTCAAGGTATTAATGTTGGAAGATTAAAAACATTGAAATTTTCATCCGCACTTTGTG
GATAAGTGATTGAAATAAAA

Downstream 100 bases:

>100_bases
AATTCTTTTTCTTGCAACGATGGTATTAGCATCAAGTTCAGCTTTTGCATTGAAAGATGATGTTAATCAGCCGATAAATA
TTGTTTCGGATAATCAATCC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 204; Mature: 204

Protein sequence:

>204_residues
MNIRWNVILGVIALCALAWFYSLNQETADLSELVKKPDSPDYVGYKMETTVFSPDGKKQYLALSDKIEHYTVNEQTLFTA
PLVYLYPTTSNEKEKEKNANQNVDFFSTQSWKLSANQARLTKDQILYLEGNVVAQNLTSDSRLQRIETESAVVNLKTQDI
TSETQVKIKGKNFSSTGLKLVGNLRQQVATLKEQVKTYYEVSKQ

Sequences:

>Translated_204_residues
MNIRWNVILGVIALCALAWFYSLNQETADLSELVKKPDSPDYVGYKMETTVFSPDGKKQYLALSDKIEHYTVNEQTLFTA
PLVYLYPTTSNEKEKEKNANQNVDFFSTQSWKLSANQARLTKDQILYLEGNVVAQNLTSDSRLQRIETESAVVNLKTQDI
TSETQVKIKGKNFSSTGLKLVGNLRQQVATLKEQVKTYYEVSKQ
>Mature_204_residues
MNIRWNVILGVIALCALAWFYSLNQETADLSELVKKPDSPDYVGYKMETTVFSPDGKKQYLALSDKIEHYTVNEQTLFTA
PLVYLYPTTSNEKEKEKNANQNVDFFSTQSWKLSANQARLTKDQILYLEGNVVAQNLTSDSRLQRIETESAVVNLKTQDI
TSETQVKIKGKNFSSTGLKLVGNLRQQVATLKEQVKTYYEVSKQ

Specific function: Required for the translocation of lipopolysaccharide (LPS) from the inner membrane to the outer membrane

COG id: COG3117

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cell inner membrane; Single-pass membrane protein

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the lptC family

Homologues:

Organism=Escherichia coli, GI1789591, Length=198, Percent_Identity=34.8484848484849, Blast_Score=115, Evalue=2e-27,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): LPTC_HAEIN (P45075)

Other databases:

- EMBL:   L42023
- PIR:   B64168
- RefSeq:   NP_439308.2
- GeneID:   950694
- GenomeReviews:   L42023_GR
- KEGG:   hin:HI1150
- NMPDR:   fig|71421.1.peg.1103
- TIGR:   HI_1150
- HOGENOM:   HBG391182
- OMA:   YWQVQSK
- ProtClustDB:   CLSK869995
- BioCyc:   HINF71421:HI_1150-MONOMER
- InterPro:   IPR010664

Pfam domain/function: PF06835 DUF1239

EC number: NA

Molecular weight: Translated: 23204; Mature: 23204

Theoretical pI: Translated: 8.35; Mature: 8.35

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

HASH(0xe260dd8)-;

Cys/Met content:

0.5 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
1.5 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
1.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNIRWNVILGVIALCALAWFYSLNQETADLSELVKKPDSPDYVGYKMETTVFSPDGKKQY
CCEEHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCCCEEEEEEEECCCCCEEE
LALSDKIEHYTVNEQTLFTAPLVYLYPTTSNEKEKEKNANQNVDFFSTQSWKLSANQARL
EEECCCCEEEECCCCEEEECCEEEEEECCCCHHHHHHCCCCCCCEEECCCEEEECCCHHC
TKDQILYLEGNVVAQNLTSDSRLQRIETESAVVNLKTQDITSETQVKIKGKNFSSTGLKL
CCCEEEEEECCEEEECCCCHHHHHHHCCCCEEEEEECCCCCCCEEEEEECCCCCCHHHHH
VGNLRQQVATLKEQVKTYYEVSKQ
HHHHHHHHHHHHHHHHHHHHHCCH
>Mature Secondary Structure
MNIRWNVILGVIALCALAWFYSLNQETADLSELVKKPDSPDYVGYKMETTVFSPDGKKQY
CCEEHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCCCEEEEEEEECCCCCEEE
LALSDKIEHYTVNEQTLFTAPLVYLYPTTSNEKEKEKNANQNVDFFSTQSWKLSANQARL
EEECCCCEEEECCCCEEEECCEEEEEECCCCHHHHHHCCCCCCCEEECCCEEEECCCHHC
TKDQILYLEGNVVAQNLTSDSRLQRIETESAVVNLKTQDITSETQVKIKGKNFSSTGLKL
CCCEEEEEECCEEEECCCCHHHHHHHCCCCEEEEEECCCCCCCEEEEEECCCCCCHHHHH
VGNLRQQVATLKEQVKTYYEVSKQ
HHHHHHHHHHHHHHHHHHHHHCCH

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7542800