Definition Haemophilus influenzae Rd KW20 chromosome, complete genome.
Accession NC_000907
Length 1,830,138

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The map label for this gene is uxuR

Identifier: 30995351

GI number: 30995351

Start: 54830

End: 55579

Strand: Direct

Name: uxuR

Synonym: HI0054

Alternate gene names: 30995351

Gene position: 54830-55579 (Clockwise)

Preceding gene: 30995350

Following gene: 16272029

Centisome position: 3.0

GC content: 31.33

Gene sequence:

>750_bases
ATGGAAAATATAGTAAATAGAACATATACCCGAATAGGTCAATTGCTAAAACAAGATATTTCTCAAGGAATTTATAGCAT
TGGAGACAAACTCCCTACAGAACGAGAAATTTCTGAAAAATTTGGTGTAAGTAGAACTATTGTTAGAGAAGCAATGGTTA
TGTTAGAAGTAGAAAAGTTAGTAGAGGTAAAAAAAGGGTCAGGCGTTTATGTAGTAAGAACCCCCGAATCAATACATATG
GAACATTCAGATTTACCAGATGTAGGTCCATTTGAACTTTTACAAGCTAGACAACTATTAGAAAGTAGTATTGCTGAATT
CGCAGCGTTACAAGCGACTAAAAAAGATATTTTAAATTTAAAACAAATACTGAATCGAGAGAAAGAATTACTTACTCAGA
ATCAAGATGACTATAGTGCAGACAAAGATTTTCATTTGGCACTTGCAGAAATTACACAAAATGATGTGTTAGTCAAATTA
CAAGAACAATTGTGGCAATATCGCTTTAATAGTGCGATGTGGGCACAATTACATTCTCGTATTTTACAAAATGATTATCA
TCATTTATGGATAGAAGATCATCAAACAATTTTATCTGCTATTCAAAAGAAAAATGCTAATGAAGCTAGAAAAGCTATGT
GGCAACACTTAGAAAATGTAAAAGTAAAATTATTTGAATTATCTGATGTAGAAGATCCACATTTTGATGGATACCTATTC
AATACAAATCCAGTTGTTGTAGGTATCTAA

Upstream 100 bases:

>100_bases
TGATTATGAAACATAAAAACTCTTTTTGGAATACCAAATATCTATTTTTGTGAGCCATATCACAAAAATAAAAAATTGGA
ATACCAATTTAAGGAAAAAT

Downstream 100 bases:

>100_bases
ATACTTGTAATAACATAGGAGTTAAAAATGGAACAAGCATGGCGTTGGTATGGACCAAAAGATCCTGTTTCTTTATCTGA
TATTCGTCAAGCAGGCGCAA

Product: uxu operon regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 249; Mature: 249

Protein sequence:

>249_residues
MENIVNRTYTRIGQLLKQDISQGIYSIGDKLPTEREISEKFGVSRTIVREAMVMLEVEKLVEVKKGSGVYVVRTPESIHM
EHSDLPDVGPFELLQARQLLESSIAEFAALQATKKDILNLKQILNREKELLTQNQDDYSADKDFHLALAEITQNDVLVKL
QEQLWQYRFNSAMWAQLHSRILQNDYHHLWIEDHQTILSAIQKKNANEARKAMWQHLENVKVKLFELSDVEDPHFDGYLF
NTNPVVVGI

Sequences:

>Translated_249_residues
MENIVNRTYTRIGQLLKQDISQGIYSIGDKLPTEREISEKFGVSRTIVREAMVMLEVEKLVEVKKGSGVYVVRTPESIHM
EHSDLPDVGPFELLQARQLLESSIAEFAALQATKKDILNLKQILNREKELLTQNQDDYSADKDFHLALAEITQNDVLVKL
QEQLWQYRFNSAMWAQLHSRILQNDYHHLWIEDHQTILSAIQKKNANEARKAMWQHLENVKVKLFELSDVEDPHFDGYLF
NTNPVVVGI
>Mature_249_residues
MENIVNRTYTRIGQLLKQDISQGIYSIGDKLPTEREISEKFGVSRTIVREAMVMLEVEKLVEVKKGSGVYVVRTPESIHM
EHSDLPDVGPFELLQARQLLESSIAEFAALQATKKDILNLKQILNREKELLTQNQDDYSADKDFHLALAEITQNDVLVKL
QEQLWQYRFNSAMWAQLHSRILQNDYHHLWIEDHQTILSAIQKKNANEARKAMWQHLENVKVKLFELSDVEDPHFDGYLF
NTNPVVVGI

Specific function: Repressor for the uxuRBA operon

COG id: COG2186

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain

Homologues:

Organism=Escherichia coli, GI1790780, Length=244, Percent_Identity=49.5901639344262, Blast_Score=239, Evalue=1e-64,
Organism=Escherichia coli, GI87082208, Length=249, Percent_Identity=46.5863453815261, Blast_Score=199, Evalue=1e-52,
Organism=Escherichia coli, GI1790032, Length=212, Percent_Identity=30.188679245283, Blast_Score=82, Evalue=5e-17,
Organism=Escherichia coli, GI1789353, Length=236, Percent_Identity=27.1186440677966, Blast_Score=77, Evalue=1e-15,
Organism=Escherichia coli, GI1789621, Length=238, Percent_Identity=28.1512605042017, Blast_Score=75, Evalue=6e-15,
Organism=Escherichia coli, GI48994955, Length=231, Percent_Identity=26.4069264069264, Blast_Score=72, Evalue=4e-14,
Organism=Escherichia coli, GI1786303, Length=223, Percent_Identity=30.9417040358744, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI1787821, Length=220, Percent_Identity=26.8181818181818, Blast_Score=65, Evalue=5e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): UXUR_HAEIN (P44487)

Other databases:

- EMBL:   L42023
- PIR:   D64045
- RefSeq:   NP_438227.2
- ProteinModelPortal:   P44487
- SMR:   P44487
- GeneID:   950951
- GenomeReviews:   L42023_GR
- KEGG:   hin:HI0054
- NMPDR:   fig|71421.1.peg.53
- TIGR:   HI_0054
- HOGENOM:   HBG700007
- OMA:   ENIVNRT
- ProtClustDB:   CLSK918300
- BioCyc:   HINF71421:HI_0054-MONOMER
- GO:   GO:0005622
- InterPro:   IPR011711
- InterPro:   IPR000524
- InterPro:   IPR011991
- Gene3D:   G3DSA:1.10.10.10
- PRINTS:   PR00035
- SMART:   SM00895
- SMART:   SM00345

Pfam domain/function: PF07729 FCD; PF00392 GntR

EC number: NA

Molecular weight: Translated: 28839; Mature: 28839

Theoretical pI: Translated: 5.59; Mature: 5.59

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MENIVNRTYTRIGQLLKQDISQGIYSIGDKLPTEREISEKFGVSRTIVREAMVMLEVEKL
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCHHHHHHHHHHHHHHHHHH
VEVKKGSGVYVVRTPESIHMEHSDLPDVGPFELLQARQLLESSIAEFAALQATKKDILNL
HHHHCCCCEEEEECCHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
KQILNREKELLTQNQDDYSADKDFHLALAEITQNDVLVKLQEQLWQYRFNSAMWAQLHSR
HHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHCHHHHHHHHHH
ILQNDYHHLWIEDHQTILSAIQKKNANEARKAMWQHLENVKVKLFELSDVEDPHFDGYLF
HHHCCCCEEEEHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHEEEEEECCCCCCCCCCEEE
NTNPVVVGI
ECCCEEEEC
>Mature Secondary Structure
MENIVNRTYTRIGQLLKQDISQGIYSIGDKLPTEREISEKFGVSRTIVREAMVMLEVEKL
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCHHHHHHHHHHHHHHHHHH
VEVKKGSGVYVVRTPESIHMEHSDLPDVGPFELLQARQLLESSIAEFAALQATKKDILNL
HHHHCCCCEEEEECCHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
KQILNREKELLTQNQDDYSADKDFHLALAEITQNDVLVKLQEQLWQYRFNSAMWAQLHSR
HHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHCHHHHHHHHHH
ILQNDYHHLWIEDHQTILSAIQKKNANEARKAMWQHLENVKVKLFELSDVEDPHFDGYLF
HHHCCCCEEEEHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHEEEEEECCCCCCCCCCEEE
NTNPVVVGI
ECCCEEEEC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800