Definition | Haemophilus influenzae Rd KW20 chromosome, complete genome. |
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Accession | NC_000907 |
Length | 1,830,138 |
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The map label for this gene is uxuR
Identifier: 30995351
GI number: 30995351
Start: 54830
End: 55579
Strand: Direct
Name: uxuR
Synonym: HI0054
Alternate gene names: 30995351
Gene position: 54830-55579 (Clockwise)
Preceding gene: 30995350
Following gene: 16272029
Centisome position: 3.0
GC content: 31.33
Gene sequence:
>750_bases ATGGAAAATATAGTAAATAGAACATATACCCGAATAGGTCAATTGCTAAAACAAGATATTTCTCAAGGAATTTATAGCAT TGGAGACAAACTCCCTACAGAACGAGAAATTTCTGAAAAATTTGGTGTAAGTAGAACTATTGTTAGAGAAGCAATGGTTA TGTTAGAAGTAGAAAAGTTAGTAGAGGTAAAAAAAGGGTCAGGCGTTTATGTAGTAAGAACCCCCGAATCAATACATATG GAACATTCAGATTTACCAGATGTAGGTCCATTTGAACTTTTACAAGCTAGACAACTATTAGAAAGTAGTATTGCTGAATT CGCAGCGTTACAAGCGACTAAAAAAGATATTTTAAATTTAAAACAAATACTGAATCGAGAGAAAGAATTACTTACTCAGA ATCAAGATGACTATAGTGCAGACAAAGATTTTCATTTGGCACTTGCAGAAATTACACAAAATGATGTGTTAGTCAAATTA CAAGAACAATTGTGGCAATATCGCTTTAATAGTGCGATGTGGGCACAATTACATTCTCGTATTTTACAAAATGATTATCA TCATTTATGGATAGAAGATCATCAAACAATTTTATCTGCTATTCAAAAGAAAAATGCTAATGAAGCTAGAAAAGCTATGT GGCAACACTTAGAAAATGTAAAAGTAAAATTATTTGAATTATCTGATGTAGAAGATCCACATTTTGATGGATACCTATTC AATACAAATCCAGTTGTTGTAGGTATCTAA
Upstream 100 bases:
>100_bases TGATTATGAAACATAAAAACTCTTTTTGGAATACCAAATATCTATTTTTGTGAGCCATATCACAAAAATAAAAAATTGGA ATACCAATTTAAGGAAAAAT
Downstream 100 bases:
>100_bases ATACTTGTAATAACATAGGAGTTAAAAATGGAACAAGCATGGCGTTGGTATGGACCAAAAGATCCTGTTTCTTTATCTGA TATTCGTCAAGCAGGCGCAA
Product: uxu operon regulator
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 249; Mature: 249
Protein sequence:
>249_residues MENIVNRTYTRIGQLLKQDISQGIYSIGDKLPTEREISEKFGVSRTIVREAMVMLEVEKLVEVKKGSGVYVVRTPESIHM EHSDLPDVGPFELLQARQLLESSIAEFAALQATKKDILNLKQILNREKELLTQNQDDYSADKDFHLALAEITQNDVLVKL QEQLWQYRFNSAMWAQLHSRILQNDYHHLWIEDHQTILSAIQKKNANEARKAMWQHLENVKVKLFELSDVEDPHFDGYLF NTNPVVVGI
Sequences:
>Translated_249_residues MENIVNRTYTRIGQLLKQDISQGIYSIGDKLPTEREISEKFGVSRTIVREAMVMLEVEKLVEVKKGSGVYVVRTPESIHM EHSDLPDVGPFELLQARQLLESSIAEFAALQATKKDILNLKQILNREKELLTQNQDDYSADKDFHLALAEITQNDVLVKL QEQLWQYRFNSAMWAQLHSRILQNDYHHLWIEDHQTILSAIQKKNANEARKAMWQHLENVKVKLFELSDVEDPHFDGYLF NTNPVVVGI >Mature_249_residues MENIVNRTYTRIGQLLKQDISQGIYSIGDKLPTEREISEKFGVSRTIVREAMVMLEVEKLVEVKKGSGVYVVRTPESIHM EHSDLPDVGPFELLQARQLLESSIAEFAALQATKKDILNLKQILNREKELLTQNQDDYSADKDFHLALAEITQNDVLVKL QEQLWQYRFNSAMWAQLHSRILQNDYHHLWIEDHQTILSAIQKKNANEARKAMWQHLENVKVKLFELSDVEDPHFDGYLF NTNPVVVGI
Specific function: Repressor for the uxuRBA operon
COG id: COG2186
COG function: function code K; Transcriptional regulators
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 HTH gntR-type DNA-binding domain
Homologues:
Organism=Escherichia coli, GI1790780, Length=244, Percent_Identity=49.5901639344262, Blast_Score=239, Evalue=1e-64, Organism=Escherichia coli, GI87082208, Length=249, Percent_Identity=46.5863453815261, Blast_Score=199, Evalue=1e-52, Organism=Escherichia coli, GI1790032, Length=212, Percent_Identity=30.188679245283, Blast_Score=82, Evalue=5e-17, Organism=Escherichia coli, GI1789353, Length=236, Percent_Identity=27.1186440677966, Blast_Score=77, Evalue=1e-15, Organism=Escherichia coli, GI1789621, Length=238, Percent_Identity=28.1512605042017, Blast_Score=75, Evalue=6e-15, Organism=Escherichia coli, GI48994955, Length=231, Percent_Identity=26.4069264069264, Blast_Score=72, Evalue=4e-14, Organism=Escherichia coli, GI1786303, Length=223, Percent_Identity=30.9417040358744, Blast_Score=67, Evalue=1e-12, Organism=Escherichia coli, GI1787821, Length=220, Percent_Identity=26.8181818181818, Blast_Score=65, Evalue=5e-12,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): UXUR_HAEIN (P44487)
Other databases:
- EMBL: L42023 - PIR: D64045 - RefSeq: NP_438227.2 - ProteinModelPortal: P44487 - SMR: P44487 - GeneID: 950951 - GenomeReviews: L42023_GR - KEGG: hin:HI0054 - NMPDR: fig|71421.1.peg.53 - TIGR: HI_0054 - HOGENOM: HBG700007 - OMA: ENIVNRT - ProtClustDB: CLSK918300 - BioCyc: HINF71421:HI_0054-MONOMER - GO: GO:0005622 - InterPro: IPR011711 - InterPro: IPR000524 - InterPro: IPR011991 - Gene3D: G3DSA:1.10.10.10 - PRINTS: PR00035 - SMART: SM00895 - SMART: SM00345
Pfam domain/function: PF07729 FCD; PF00392 GntR
EC number: NA
Molecular weight: Translated: 28839; Mature: 28839
Theoretical pI: Translated: 5.59; Mature: 5.59
Prosite motif: PS50949 HTH_GNTR
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 2.4 %Met (Translated Protein) 2.4 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 2.4 %Met (Mature Protein) 2.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MENIVNRTYTRIGQLLKQDISQGIYSIGDKLPTEREISEKFGVSRTIVREAMVMLEVEKL CCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCHHHHHHHHHHHHHHHHHH VEVKKGSGVYVVRTPESIHMEHSDLPDVGPFELLQARQLLESSIAEFAALQATKKDILNL HHHHCCCCEEEEECCHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH KQILNREKELLTQNQDDYSADKDFHLALAEITQNDVLVKLQEQLWQYRFNSAMWAQLHSR HHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHCHHHHHHHHHH ILQNDYHHLWIEDHQTILSAIQKKNANEARKAMWQHLENVKVKLFELSDVEDPHFDGYLF HHHCCCCEEEEHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHEEEEEECCCCCCCCCCEEE NTNPVVVGI ECCCEEEEC >Mature Secondary Structure MENIVNRTYTRIGQLLKQDISQGIYSIGDKLPTEREISEKFGVSRTIVREAMVMLEVEKL CCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCHHHHHHHHHHHHHHHHHH VEVKKGSGVYVVRTPESIHMEHSDLPDVGPFELLQARQLLESSIAEFAALQATKKDILNL HHHHCCCCEEEEECCHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH KQILNREKELLTQNQDDYSADKDFHLALAEITQNDVLVKLQEQLWQYRFNSAMWAQLHSR HHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHCHHHHHHHHHH ILQNDYHHLWIEDHQTILSAIQKKNANEARKAMWQHLENVKVKLFELSDVEDPHFDGYLF HHHCCCCEEEEHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHEEEEEECCCCCCCCCCEEE NTNPVVVGI ECCCEEEEC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: DNA [C]
Specific reaction: Protein + DNA = Protein-DNA [C]
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 7542800