Definition | Shigella flexneri 2a str. 2457T, complete genome. |
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Accession | NC_004741 |
Length | 4,599,354 |
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The map label for this gene is yhjN
Identifier: 30065187
GI number: 30065187
Start: 4111892
End: 4114201
Strand: Direct
Name: yhjN
Synonym: S4203
Alternate gene names: 30065187
Gene position: 4111892-4114201 (Clockwise)
Preceding gene: 30065186
Following gene: 30065188
Centisome position: 89.4
GC content: 54.76
Gene sequence:
>2310_bases GTGGCTATGGGGATGAGTGCGTTCCCCTCTTTCATGACGCAGGCGACGCCAGCAACGCAACCACTGATCAATGCTGAGCC AGCTGTAGCCGCCCAGACGGAACAAAATCCGCAGGTGGGGCAAGTGATGTCAGGCGAGCAGGGAGCTGATGCCCCCATCG TGGCGCAGAACGGTCCTTCGCGTGATGTGAAGCTGACCTTTGCGCAAATCGCGCCGCCGCCGGGCAGCATGGTGCTACGT GGTATTAACCCGAACGGCAGCATTGAGTTTGGTATGCGCAGCGATGAAGTGGTGACGAAGGCGATGCTCAACTTCGAATA CACGCCATCGCCATCGTTACTGCCTGTCCAGTCGCAGTTAAAGGTTTATCTCAATGATGAGCTGATGGGCGTGCTGCCAG TGACCAAAGAACAGTTGGGTAAAAAAACGCTGGCGCAAATGCCCATTAATCCACTGTTTATTACCGACTTCAACCGTGTG CGGCTGGAGTTTGTCGGCCATTATCAGGACGTGTGCGAAAACCCGGCCAGCACCACGCTTTGGCTGGATGTTGGGCGGAG CAGTGGACTGGATCTGACCTATCAGACCCTGAATGTGAAGAATGACCTGTCACACTTCCCGGTGCCATTCTTTGACCCGC GCGATAACCGTACTAACACCTTGCCGATGGTCTTTGCGGGTGCGCCGGATGTTGGGCTGCAACAAGCATCTGCCATTGTC GCCTCGTGGTTTGGTTCGCGTTCTGGCTGGCGTGGGCAGAACTTCCCGGTGCTCTATAACCAATTGCCGGATCGCAATGC CATTGTCTTTGCAACCAACGACAAACGGCCGGACTTCCTGCGCGATCATCCGGCGGTAAAAGCCCCGGTGATTGAGATGA TTAACCATCCGCAGAATCCTTACGTCAAACTGCTGGTGGTGTTTGGTCGTGACGACAAAGACCTGTTGCAGGCAGCGAAA GGTATCGCTCAGGGTAACATTCTGTTCCGTGGTGAAAGCGTGGTAGTGAATGAAGTGAAACCGCTGCTACCGCGTAAGCC GTACGATGCGCCGAACTGGGTACGTACCGATCGTCCGGTCACATTTGGCGAACTGAAAACCTATGAAGAACAGTTACAAT CCAGCGGCCTTGAGCCAGCAGCGATTAACGTTTCGCTAAACCTGCCGCCGGATCTCTACCTGATGCGCAGTACCGGCATT GATATGGATATTAATTACCGCTACACCATGCCGCCGGTGAAAGACAGTTCGCGGATGGATATCAGCCTGAATAACCAGTT CCTGCAATCCTTCAACCTGAGCAGCAAACAGGAGGCGAACCGTCTGCTGCTGCGTATTCCGGTATTACAAGGTTTGCTGG ATGGCAAAACAGATGTCTCTATTCCGGCGCTGAAACTGGGCGCGACCAACCAGCTGCGCTTCGACTTTGAGTATATGAAC CCGATGCCAGGCGGTTCGGTAGATAACTGTATTACCTTCCAGCCGGTGCAGAATCATGTGGTGATTGGTGACGATTCCAC CATCGACTTCTCGAAGTATTACCACTTCATCCCGATGCCGGATCTACGCGCCTTTGCTAACGCGGGCTTCCCATTCAGCC GGATGGCGGATCTGTCGCAAACCATCACCGTGATGCCGAAAGCGCCTAACGAAGCACAGATGGAAACGTTGCTGAATACT GTTGGTTTTATCGGCGCACAGACGGGCTTCCCGGCGATTAATCTGACGGTGACCGATGATGGCAGCACCATTCAGGGCAA AGATGCCGACATCATGATCATCGGTGGTATCCCGGACAAACTGAAAGACGATAAGCAGATCGACCTATTGGTGCAGGCGA CCGAAAGCTGGGTGAAAACACCGATGCGCCAGACCCCGTTCCCCGGCATTGTGCCGGACGAGAGCGATCGCGCGGCAGAA ACCCAGTCAACGCTGACCTCTTTCGGTGCGATGGCGGCGGTGATTGGCTTCCAGTCGCCGTATAACGACCAGCGCAGCGT GATTGCGCTGTTGGCAGATAGCCCACGCGGTTATGAAATGCTTAACGATGCGGTGAACGATAGCGGCAAACGCGCCACCA TGTTCGGTTCGGTCGCGGTGATCCGCGAGTCCGGTATCAACAGCCTACGTGTTGGCGACGTTTATTACGTAGGTCATCTG CCGTGGTTCGAGCGCTTGTGGTATGCGCTGGCAAACCATCCGATTCTGCTGGCGGTGCTGGCGACTATCAGTGTGATATT GCTGGCATGGGTACTGTGGCGTCTGCTGCGAATTATTAGTCGTCGTCGTCTTAACCCGGATAACGAGTAA
Upstream 100 bases:
>100_bases CGCCGCCCGGAGCGGAGCGAAACGGCACAACCATCGGATCAGGCTTTGGCTCAACAATGATGATAACGCGATGAAAAGAA AACTATTCTGGATTTGTGCA
Downstream 100 bases:
>100_bases TTGAAGATGAATGTGTTGCGTAGTGGAATCGTGACGATGCTGTTGTTGGCTGCCTTTAGTGTTCAGGCAGCCTGTACCTG GCCTGCCTGGGAGCAGTTTA
Product: cellulose synthase regulator protein
Products: NA
Alternate protein names: Cellulose synthase regulatory subunit [H]
Number of amino acids: Translated: 769; Mature: 768
Protein sequence:
>769_residues MAMGMSAFPSFMTQATPATQPLINAEPAVAAQTEQNPQVGQVMSGEQGADAPIVAQNGPSRDVKLTFAQIAPPPGSMVLR GINPNGSIEFGMRSDEVVTKAMLNFEYTPSPSLLPVQSQLKVYLNDELMGVLPVTKEQLGKKTLAQMPINPLFITDFNRV RLEFVGHYQDVCENPASTTLWLDVGRSSGLDLTYQTLNVKNDLSHFPVPFFDPRDNRTNTLPMVFAGAPDVGLQQASAIV ASWFGSRSGWRGQNFPVLYNQLPDRNAIVFATNDKRPDFLRDHPAVKAPVIEMINHPQNPYVKLLVVFGRDDKDLLQAAK GIAQGNILFRGESVVVNEVKPLLPRKPYDAPNWVRTDRPVTFGELKTYEEQLQSSGLEPAAINVSLNLPPDLYLMRSTGI DMDINYRYTMPPVKDSSRMDISLNNQFLQSFNLSSKQEANRLLLRIPVLQGLLDGKTDVSIPALKLGATNQLRFDFEYMN PMPGGSVDNCITFQPVQNHVVIGDDSTIDFSKYYHFIPMPDLRAFANAGFPFSRMADLSQTITVMPKAPNEAQMETLLNT VGFIGAQTGFPAINLTVTDDGSTIQGKDADIMIIGGIPDKLKDDKQIDLLVQATESWVKTPMRQTPFPGIVPDESDRAAE TQSTLTSFGAMAAVIGFQSPYNDQRSVIALLADSPRGYEMLNDAVNDSGKRATMFGSVAVIRESGINSLRVGDVYYVGHL PWFERLWYALANHPILLAVLATISVILLAWVLWRLLRIISRRRLNPDNE
Sequences:
>Translated_769_residues MAMGMSAFPSFMTQATPATQPLINAEPAVAAQTEQNPQVGQVMSGEQGADAPIVAQNGPSRDVKLTFAQIAPPPGSMVLR GINPNGSIEFGMRSDEVVTKAMLNFEYTPSPSLLPVQSQLKVYLNDELMGVLPVTKEQLGKKTLAQMPINPLFITDFNRV RLEFVGHYQDVCENPASTTLWLDVGRSSGLDLTYQTLNVKNDLSHFPVPFFDPRDNRTNTLPMVFAGAPDVGLQQASAIV ASWFGSRSGWRGQNFPVLYNQLPDRNAIVFATNDKRPDFLRDHPAVKAPVIEMINHPQNPYVKLLVVFGRDDKDLLQAAK GIAQGNILFRGESVVVNEVKPLLPRKPYDAPNWVRTDRPVTFGELKTYEEQLQSSGLEPAAINVSLNLPPDLYLMRSTGI DMDINYRYTMPPVKDSSRMDISLNNQFLQSFNLSSKQEANRLLLRIPVLQGLLDGKTDVSIPALKLGATNQLRFDFEYMN PMPGGSVDNCITFQPVQNHVVIGDDSTIDFSKYYHFIPMPDLRAFANAGFPFSRMADLSQTITVMPKAPNEAQMETLLNT VGFIGAQTGFPAINLTVTDDGSTIQGKDADIMIIGGIPDKLKDDKQIDLLVQATESWVKTPMRQTPFPGIVPDESDRAAE TQSTLTSFGAMAAVIGFQSPYNDQRSVIALLADSPRGYEMLNDAVNDSGKRATMFGSVAVIRESGINSLRVGDVYYVGHL PWFERLWYALANHPILLAVLATISVILLAWVLWRLLRIISRRRLNPDNE >Mature_768_residues AMGMSAFPSFMTQATPATQPLINAEPAVAAQTEQNPQVGQVMSGEQGADAPIVAQNGPSRDVKLTFAQIAPPPGSMVLRG INPNGSIEFGMRSDEVVTKAMLNFEYTPSPSLLPVQSQLKVYLNDELMGVLPVTKEQLGKKTLAQMPINPLFITDFNRVR LEFVGHYQDVCENPASTTLWLDVGRSSGLDLTYQTLNVKNDLSHFPVPFFDPRDNRTNTLPMVFAGAPDVGLQQASAIVA SWFGSRSGWRGQNFPVLYNQLPDRNAIVFATNDKRPDFLRDHPAVKAPVIEMINHPQNPYVKLLVVFGRDDKDLLQAAKG IAQGNILFRGESVVVNEVKPLLPRKPYDAPNWVRTDRPVTFGELKTYEEQLQSSGLEPAAINVSLNLPPDLYLMRSTGID MDINYRYTMPPVKDSSRMDISLNNQFLQSFNLSSKQEANRLLLRIPVLQGLLDGKTDVSIPALKLGATNQLRFDFEYMNP MPGGSVDNCITFQPVQNHVVIGDDSTIDFSKYYHFIPMPDLRAFANAGFPFSRMADLSQTITVMPKAPNEAQMETLLNTV GFIGAQTGFPAINLTVTDDGSTIQGKDADIMIIGGIPDKLKDDKQIDLLVQATESWVKTPMRQTPFPGIVPDESDRAAET QSTLTSFGAMAAVIGFQSPYNDQRSVIALLADSPRGYEMLNDAVNDSGKRATMFGSVAVIRESGINSLRVGDVYYVGHLP WFERLWYALANHPILLAVLATISVILLAWVLWRLLRIISRRRLNPDNE
Specific function: Binds the cellulose synthase activator, bis-(3'-5') cyclic diguanylic acid (c-di-GMP) [H]
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cell inner membrane; Single-pass type I membrane protein [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the AcsB/BcsB family [H]
Homologues:
Organism=Escherichia coli, GI1789952, Length=769, Percent_Identity=98.4395318595579, Blast_Score=1549, Evalue=0.0,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003920 - InterPro: IPR018513 [H]
Pfam domain/function: PF03170 BcsB [H]
EC number: NA
Molecular weight: Translated: 84992; Mature: 84861
Theoretical pI: Translated: 5.12; Mature: 5.12
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 3.5 %Met (Translated Protein) 3.8 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 3.4 %Met (Mature Protein) 3.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAMGMSAFPSFMTQATPATQPLINAEPAVAAQTEQNPQVGQVMSGEQGADAPIVAQNGPS CCCCCHHHHHHHHCCCCCCCCCCCCCCCEEECCCCCCCCCHHCCCCCCCCCCEEECCCCC RDVKLTFAQIAPPPGSMVLRGINPNGSIEFGMRSDEVVTKAMLNFEYTPSPSLLPVQSQL CCEEEEEEEECCCCCCEEEEECCCCCCEEECCCCHHHHHHHHHCEEECCCCCEEECCCCE KVYLNDELMGVLPVTKEQLGKKTLAQMPINPLFITDFNRVRLEFVGHYQDVCENPASTTL EEEECCCEEEEECCCHHHHCHHHHHHCCCCEEEEECCCEEEEEHHHHHHHHHCCCCCEEE WLDVGRSSGLDLTYQTLNVKNDLSHFPVPFFDPRDNRTNTLPMVFAGAPDVGLQQASAIV EEECCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCHHHHHHHH ASWFGSRSGWRGQNFPVLYNQLPDRNAIVFATNDKRPDFLRDHPAVKAPVIEMINHPQNP HHHHCCCCCCCCCCCCCCEECCCCCCEEEEEECCCCCCHHHCCCCCHHHHHHHHCCCCCC YVKLLVVFGRDDKDLLQAAKGIAQGNILFRGESVVVNEVKPLLPRKPYDAPNWVRTDRPV EEEEEEEECCCCHHHHHHHHCCCCCCEEEECCEEEEECHHHHCCCCCCCCCCCCCCCCCC TFGELKTYEEQLQSSGLEPAAINVSLNLPPDLYLMRSTGIDMDINYRYTMPPVKDSSRMD CHHHHHHHHHHHHHCCCCCEEEEEEECCCCCEEEEECCCCCEEEEEEEECCCCCCCCEEE ISLNNQFLQSFNLSSKQEANRLLLRIPVLQGLLDGKTDVSIPALKLGATNQLRFDFEYMN EEECHHHHHHCCCCCHHHHHHEEEEEHHHHHHHCCCCCCCCCEEEECCCCEEEEEEEECC PMPGGSVDNCITFQPVQNHVVIGDDSTIDFSKYYHFIPMPDLRAFANAGFPFSRMADLSQ CCCCCCCCCEEEEEECCCEEEECCCCCEEHHHEEEECCCCHHHHHHCCCCCHHHHHHCCC TITVMPKAPNEAQMETLLNTVGFIGAQTGFPAINLTVTDDGSTIQGKDADIMIIGGIPDK EEEEEECCCCHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCEECCCCCCEEEECCCCHH LKDDKQIDLLVQATESWVKTPMRQTPFPGIVPDESDRAAETQSTLTSFGAMAAVIGFQSP HCCCCCEEEEEEHHHHHHHCCHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCC YNDQRSVIALLADSPRGYEMLNDAVNDSGKRATMFGSVAVIRESGINSLRVGDVYYVGHL CCCCCEEEEEEECCCCCHHHHHHHHCCCCCEEEEEEEEEEEECCCCCEEEECCEEEECCC PWFERLWYALANHPILLAVLATISVILLAWVLWRLLRIISRRRLNPDNE CHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC >Mature Secondary Structure AMGMSAFPSFMTQATPATQPLINAEPAVAAQTEQNPQVGQVMSGEQGADAPIVAQNGPS CCCCHHHHHHHHCCCCCCCCCCCCCCCEEECCCCCCCCCHHCCCCCCCCCCEEECCCCC RDVKLTFAQIAPPPGSMVLRGINPNGSIEFGMRSDEVVTKAMLNFEYTPSPSLLPVQSQL CCEEEEEEEECCCCCCEEEEECCCCCCEEECCCCHHHHHHHHHCEEECCCCCEEECCCCE KVYLNDELMGVLPVTKEQLGKKTLAQMPINPLFITDFNRVRLEFVGHYQDVCENPASTTL EEEECCCEEEEECCCHHHHCHHHHHHCCCCEEEEECCCEEEEEHHHHHHHHHCCCCCEEE WLDVGRSSGLDLTYQTLNVKNDLSHFPVPFFDPRDNRTNTLPMVFAGAPDVGLQQASAIV EEECCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCHHHHHHHH ASWFGSRSGWRGQNFPVLYNQLPDRNAIVFATNDKRPDFLRDHPAVKAPVIEMINHPQNP HHHHCCCCCCCCCCCCCCEECCCCCCEEEEEECCCCCCHHHCCCCCHHHHHHHHCCCCCC YVKLLVVFGRDDKDLLQAAKGIAQGNILFRGESVVVNEVKPLLPRKPYDAPNWVRTDRPV EEEEEEEECCCCHHHHHHHHCCCCCCEEEECCEEEEECHHHHCCCCCCCCCCCCCCCCCC TFGELKTYEEQLQSSGLEPAAINVSLNLPPDLYLMRSTGIDMDINYRYTMPPVKDSSRMD CHHHHHHHHHHHHHCCCCCEEEEEEECCCCCEEEEECCCCCEEEEEEEECCCCCCCCEEE ISLNNQFLQSFNLSSKQEANRLLLRIPVLQGLLDGKTDVSIPALKLGATNQLRFDFEYMN EEECHHHHHHCCCCCHHHHHHEEEEEHHHHHHHCCCCCCCCCEEEECCCCEEEEEEEECC PMPGGSVDNCITFQPVQNHVVIGDDSTIDFSKYYHFIPMPDLRAFANAGFPFSRMADLSQ CCCCCCCCCEEEEEECCCEEEECCCCCEEHHHEEEECCCCHHHHHHCCCCCHHHHHHCCC TITVMPKAPNEAQMETLLNTVGFIGAQTGFPAINLTVTDDGSTIQGKDADIMIIGGIPDK EEEEEECCCCHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCEECCCCCCEEEECCCCHH LKDDKQIDLLVQATESWVKTPMRQTPFPGIVPDESDRAAETQSTLTSFGAMAAVIGFQSP HCCCCCEEEEEEHHHHHHHCCHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCC YNDQRSVIALLADSPRGYEMLNDAVNDSGKRATMFGSVAVIRESGINSLRVGDVYYVGHL CCCCCEEEEEEECCCCCHHHHHHHHCCCCCEEEEEEEEEEEECCCCCEEEECCEEEECCC PWFERLWYALANHPILLAVLATISVILLAWVLWRLLRIISRRRLNPDNE CHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 11206551; 11258796 [H]