Definition | Shigella flexneri 2a str. 2457T, complete genome. |
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Accession | NC_004741 |
Length | 4,599,354 |
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The map label for this gene is dinD
Identifier: 30065079
GI number: 30065079
Start: 3986358
End: 3987182
Strand: Reverse
Name: dinD
Synonym: S4084
Alternate gene names: 30065079
Gene position: 3987182-3986358 (Counterclockwise)
Preceding gene: 30065080
Following gene: 30065078
Centisome position: 86.69
GC content: 45.7
Gene sequence:
>825_bases ATGAACGAACATCATCAACCTTTTGAAGAGATAAAACTGATTAATGCAAACGGAGCAGAACAATGGTCAGCAAGACAACT TGGGAAACTACTGGGTTATTCAGAGTATCGTCACTTTATACCTGTATTAACGCGCGCCAAAGAGGCCTGTGAGAACAGTG GTCACACAATTGATGACCATTTCGAGGAGATCCTCGATATGGTCAAAATTGGCTCAAATGCCAAAAGAGCATTAAAAGAC ATCGTACTCTCCCGCTATGCCTGTTACCTGGTAGTACAAAACGGCGACCCCGCGAAACCGGTCATTGCGGCAGGGCAGAC TTATTTTACTATCCAGACCCGACGGCAGGAGCTTGCTGACGATGAAGCATTTAAGCAACTTCGTGAAGACGAAAAGCGTC TGTTTCTGAGAAATGAGTTGAAAGAACATAACAAACAATTGGTTGAGGCAGCACAGCAAGCTGGGGTAGCGACAGCTACT GATTTCGCCATATTTCAGAATCATGGTTACCAGGGGCTGTATGGTGGATTAGATCAGAAAGCCATCCACCAACTGAAGGG GCTGAAAAAGAGTCAGAAGATCCTGGATCATATGGGTTCAACAGAACTGGCGGCTAATCTCTTTCGAGCTACCCAAACAG AAGAAAAACTCAAGCGGGATAGCGTGAATTCAAAACAGCAAGCTAATACCACACACTTTGACGTGGGTAGCAAGGTGAGG CAAACCATTCAGGAACTTGGCGGAACCATACCTGAGGAGTTGCCGACCCCGCAGGTCAGCATCAAGCAGTTGGAAAACAG TGTAAAAATTACAGAGAAGAAATAG
Upstream 100 bases:
>100_bases TTTTTTGCCCAGCACACTGAGAACGTGAGATACTCACAACTGTATATAAATACAGTTACAGATTTACTTTCTTTGCAATC GATATCACATGGAGTGGGCA
Downstream 100 bases:
>100_bases CAGAAACGAAAAACTCTTTTTGTTGATTGAGACACCCGATGCGTAAGCCAAGGTCCAGGTGCAGTGAACACAATGGCTAA ACATTGCACCTTTCTTTTCC
Product: DNA-damage-inducible protein D
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 274; Mature: 274
Protein sequence:
>274_residues MNEHHQPFEEIKLINANGAEQWSARQLGKLLGYSEYRHFIPVLTRAKEACENSGHTIDDHFEEILDMVKIGSNAKRALKD IVLSRYACYLVVQNGDPAKPVIAAGQTYFTIQTRRQELADDEAFKQLREDEKRLFLRNELKEHNKQLVEAAQQAGVATAT DFAIFQNHGYQGLYGGLDQKAIHQLKGLKKSQKILDHMGSTELAANLFRATQTEEKLKRDSVNSKQQANTTHFDVGSKVR QTIQELGGTIPEELPTPQVSIKQLENSVKITEKK
Sequences:
>Translated_274_residues MNEHHQPFEEIKLINANGAEQWSARQLGKLLGYSEYRHFIPVLTRAKEACENSGHTIDDHFEEILDMVKIGSNAKRALKD IVLSRYACYLVVQNGDPAKPVIAAGQTYFTIQTRRQELADDEAFKQLREDEKRLFLRNELKEHNKQLVEAAQQAGVATAT DFAIFQNHGYQGLYGGLDQKAIHQLKGLKKSQKILDHMGSTELAANLFRATQTEEKLKRDSVNSKQQANTTHFDVGSKVR QTIQELGGTIPEELPTPQVSIKQLENSVKITEKK >Mature_274_residues MNEHHQPFEEIKLINANGAEQWSARQLGKLLGYSEYRHFIPVLTRAKEACENSGHTIDDHFEEILDMVKIGSNAKRALKD IVLSRYACYLVVQNGDPAKPVIAAGQTYFTIQTRRQELADDEAFKQLREDEKRLFLRNELKEHNKQLVEAAQQAGVATAT DFAIFQNHGYQGLYGGLDQKAIHQLKGLKKSQKILDHMGSTELAANLFRATQTEEKLKRDSVNSKQQANTTHFDVGSKVR QTIQELGGTIPEELPTPQVSIKQLENSVKITEKK
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
Organism=Escherichia coli, GI87082303, Length=274, Percent_Identity=97.8102189781022, Blast_Score=556, Evalue=1e-160,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 30981; Mature: 30981
Theoretical pI: Translated: 7.78; Mature: 7.78
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 1.1 %Met (Translated Protein) 1.8 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 1.1 %Met (Mature Protein) 1.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNEHHQPFEEIKLINANGAEQWSARQLGKLLGYSEYRHFIPVLTRAKEACENSGHTIDDH CCCCCCCHHHEEEECCCCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHCCCCCHHHH FEEILDMVKIGSNAKRALKDIVLSRYACYLVVQNGDPAKPVIAAGQTYFTIQTRRQELAD HHHHHHHHHCCCHHHHHHHHHHHHHHHEEEEEECCCCCCCEEECCCEEEEEHHHHHHHCC DEAFKQLREDEKRLFLRNELKEHNKQLVEAAQQAGVATATDFAIFQNHGYQGLYGGLDQK HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCHHCCCCHH AIHQLKGLKKSQKILDHMGSTELAANLFRATQTEEKLKRDSVNSKQQANTTHFDVGSKVR HHHHHHCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHCCCCHHHCCHHHH QTIQELGGTIPEELPTPQVSIKQLENSVKITEKK HHHHHHCCCCCHHCCCCCHHHHHHHHHHCCCCCC >Mature Secondary Structure MNEHHQPFEEIKLINANGAEQWSARQLGKLLGYSEYRHFIPVLTRAKEACENSGHTIDDH CCCCCCCHHHEEEECCCCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHCCCCCHHHH FEEILDMVKIGSNAKRALKDIVLSRYACYLVVQNGDPAKPVIAAGQTYFTIQTRRQELAD HHHHHHHHHCCCHHHHHHHHHHHHHHHEEEEEECCCCCCCEEECCCEEEEEHHHHHHHCC DEAFKQLREDEKRLFLRNELKEHNKQLVEAAQQAGVATATDFAIFQNHGYQGLYGGLDQK HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCHHCCCCHH AIHQLKGLKKSQKILDHMGSTELAANLFRATQTEEKLKRDSVNSKQQANTTHFDVGSKVR HHHHHHCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHCCCCHHHCCHHHH QTIQELGGTIPEELPTPQVSIKQLENSVKITEKK HHHHHHCCCCCHHCCCCCHHHHHHHHHHCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 2664418; 7686882; 9278503; 2158980; 1925027; 8195095; 8057377; 8002613 [H]