Definition | Shigella flexneri 2a str. 2457T, complete genome. |
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Accession | NC_004741 |
Length | 4,599,354 |
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The map label for this gene is yicG
Identifier: 30065078
GI number: 30065078
Start: 3985450
End: 3986121
Strand: Reverse
Name: yicG
Synonym: S4083
Alternate gene names: 30065078
Gene position: 3986121-3985450 (Counterclockwise)
Preceding gene: 30065079
Following gene: 30065076
Centisome position: 86.67
GC content: 52.53
Gene sequence:
>672_bases GTGACAATGCGCACAAATCGCTACCCTGCCAGACAGATTTTTAGGGAGAGAACCATGCTGTTACACATTTTGTATTTGGT TGGCATTACTGCCGAAGCCATGACGGGGGCGCTGGCGGCCGGGCGACGGCGCATGGATACATTTGGCGTAATTATTATTG CAACCGCCACCGCAATTGGCGGAGGGTCAGTGCGCGATATTCTGCTGGGCCACTATCCGCTCGGCTGGGTCAAACACCCG GAATATGTGATTATCGTCGCTACCGCCGCAGTACTCACCACTATCGTTGCTCCTGTAATGCCTTACCTGCGCAAAGTGTT TCTGGTGCTCGATGCGCTCGGACTGGTGGTCTTTTCTATCATCGGCGCACAGGTTGCACTGGATATGGGGCACGGCCCAA TTATTGCCGTTGTCGCGGCGGTAACCACCGGTGTATTTGGCGGCGTTTTGCGCGATATGTTCTGTAAACGCATTCCGCTG GTCTTTCAAAAAGAGTTGTATGCCGGTGTCTCATTTGCCTCCGCCGTGCTGTACATCGCGCTGCAACACTATGTTTCTAA CCATGATGTGGTGATTATCTCCACCCTGGTATTCGGCTTTTTTGCTCGTTTACTGGCGCTACGTCTTAAGCTGGGATTAC CGGTCTTTTACTACAGCCACGAAGGTCACTAA
Upstream 100 bases:
>100_bases CTCAGACAAGAAGTCAGAAGAATGCATCTACGCTACAGAAAATAGCGATTTCACATAACTAAAAGTTATCAATTTCCTCT CACCTTAAAAAATATCAATC
Downstream 100 bases:
>100_bases GGTTCAAAACCTGTGATCTGCTGGGCAGCCAGCCAACTGCCCAGCTTCTTGATTTGCGCATTTTCCTTCCATTCAATAAC CTGTCTGGCGCGCCCAGATC
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 223; Mature: 222
Protein sequence:
>223_residues MTMRTNRYPARQIFRERTMLLHILYLVGITAEAMTGALAAGRRRMDTFGVIIIATATAIGGGSVRDILLGHYPLGWVKHP EYVIIVATAAVLTTIVAPVMPYLRKVFLVLDALGLVVFSIIGAQVALDMGHGPIIAVVAAVTTGVFGGVLRDMFCKRIPL VFQKELYAGVSFASAVLYIALQHYVSNHDVVIISTLVFGFFARLLALRLKLGLPVFYYSHEGH
Sequences:
>Translated_223_residues MTMRTNRYPARQIFRERTMLLHILYLVGITAEAMTGALAAGRRRMDTFGVIIIATATAIGGGSVRDILLGHYPLGWVKHP EYVIIVATAAVLTTIVAPVMPYLRKVFLVLDALGLVVFSIIGAQVALDMGHGPIIAVVAAVTTGVFGGVLRDMFCKRIPL VFQKELYAGVSFASAVLYIALQHYVSNHDVVIISTLVFGFFARLLALRLKLGLPVFYYSHEGH >Mature_222_residues TMRTNRYPARQIFRERTMLLHILYLVGITAEAMTGALAAGRRRMDTFGVIIIATATAIGGGSVRDILLGHYPLGWVKHPE YVIIVATAAVLTTIVAPVMPYLRKVFLVLDALGLVVFSIIGAQVALDMGHGPIIAVVAAVTTGVFGGVLRDMFCKRIPLV FQKELYAGVSFASAVLYIALQHYVSNHDVVIISTLVFGFFARLLALRLKLGLPVFYYSHEGH
Specific function: Unknown
COG id: COG2860
COG function: function code S; Predicted membrane protein
Gene ontology:
Cell location: Cell inner membrane; Multi-pass membrane protein [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the UPF0126 family [H]
Homologues:
Organism=Escherichia coli, GI87082304, Length=205, Percent_Identity=100, Blast_Score=402, Evalue=1e-113, Organism=Escherichia coli, GI1786352, Length=208, Percent_Identity=37.0192307692308, Blast_Score=111, Evalue=3e-26,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR005115 [H]
Pfam domain/function: PF03458 UPF0126 [H]
EC number: NA
Molecular weight: Translated: 24359; Mature: 24227
Theoretical pI: Translated: 10.12; Mature: 10.12
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 3.6 %Met (Translated Protein) 4.0 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 3.2 %Met (Mature Protein) 3.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTMRTNRYPARQIFRERTMLLHILYLVGITAEAMTGALAAGRRRMDTFGVIIIATATAIG CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEEEEEEHHHCC GGSVRDILLGHYPLGWVKHPEYVIIVATAAVLTTIVAPVMPYLRKVFLVLDALGLVVFSI CCCHHHHHHCCCCCCCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH IGAQVALDMGHGPIIAVVAAVTTGVFGGVLRDMFCKRIPLVFQKELYAGVSFASAVLYIA HHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHH LQHYVSNHDVVIISTLVFGFFARLLALRLKLGLPVFYYSHEGH HHHHHCCCCEEHHHHHHHHHHHHHHHHHHHHCCEEEEECCCCC >Mature Secondary Structure TMRTNRYPARQIFRERTMLLHILYLVGITAEAMTGALAAGRRRMDTFGVIIIATATAIG CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEEEEEEHHHCC GGSVRDILLGHYPLGWVKHPEYVIIVATAAVLTTIVAPVMPYLRKVFLVLDALGLVVFSI CCCHHHHHHCCCCCCCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH IGAQVALDMGHGPIIAVVAAVTTGVFGGVLRDMFCKRIPLVFQKELYAGVSFASAVLYIA HHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHH LQHYVSNHDVVIISTLVFGFFARLLALRLKLGLPVFYYSHEGH HHHHHCCCCEEHHHHHHHHHHHHHHHHHHHHCCEEEEECCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: 12471157 [H]