Click here to switch to the map view.

The map label for this gene is yrdD

Identifier: 30064605

GI number: 30064605

Start: 3404385

End: 3404903

Strand: Reverse

Name: yrdD

Synonym: S3539

Alternate gene names: 30064605

Gene position: 3404903-3404385 (Counterclockwise)

Preceding gene: 30064606

Following gene: 30064604

Centisome position: 74.03

GC content: 49.71

Gene sequence:

>519_bases
GTGCGTAATAATGAGTCCTGCCCAAAGTGCGGGGCTGAACTGGTTATTCGATCCGGGAAACACGGTCCGTTTCTTGGATG
CTCACAGTATCCGGCGTGTGACTACGTCCGTCCTCTGAAATCTTCAGCGGATGGACATATTGTCAAAGTTCTGGAGGGGC
AGGTTTGCCCCGTATGTGGCGCAAATCTGGTATTACGCCAGGGACGCTTTGGTATGTTTATTGGTTGCAGTAACTACCCT
GAATGCGAACATACCGAACTTATCGATAAACCGGACGAAACAGCAATTACATGCCCCCAATGTCGGACGGGCCATCTGGT
CCAGCGCCGCTCCCGTTATGGCAAAACATTTCACTCCTGTGATCGCTACCCGGAGTGTCAATTTGCCATTAACTTCAAAC
CAATAGCTGGAGAATGCCCTGAGTGTCATTATCCGCTACTCATCGAAAAGAAAACCGCGCAGGGTGTAAAACACTTTTGT
GCCAGTAAACAATGTGGAAAGCCGGTTTCGGCGGAATAA

Upstream 100 bases:

>100_bases
CAAATGGAAGAATTACTCTTTGAAGTGAATGAAGGTATGCTGCATTAATCATTTCTTTAATTCAGCATAAGTTGTTATGG
CAAAATCAGCACTGTTCACG

Downstream 100 bases:

>100_bases
TAACGTGAATAATAACCTGCAAGGAGACGCTATCGCAGCTGCGATAGATGTCCTCAATGAAAAACGTGTCATCGCCTATC
CAACGGAAGCCGTTTTCGGT

Product: putative DNA topoisomerase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 172; Mature: 172

Protein sequence:

>172_residues
MRNNESCPKCGAELVIRSGKHGPFLGCSQYPACDYVRPLKSSADGHIVKVLEGQVCPVCGANLVLRQGRFGMFIGCSNYP
ECEHTELIDKPDETAITCPQCRTGHLVQRRSRYGKTFHSCDRYPECQFAINFKPIAGECPECHYPLLIEKKTAQGVKHFC
ASKQCGKPVSAE

Sequences:

>Translated_172_residues
MRNNESCPKCGAELVIRSGKHGPFLGCSQYPACDYVRPLKSSADGHIVKVLEGQVCPVCGANLVLRQGRFGMFIGCSNYP
ECEHTELIDKPDETAITCPQCRTGHLVQRRSRYGKTFHSCDRYPECQFAINFKPIAGECPECHYPLLIEKKTAQGVKHFC
ASKQCGKPVSAE
>Mature_172_residues
MRNNESCPKCGAELVIRSGKHGPFLGCSQYPACDYVRPLKSSADGHIVKVLEGQVCPVCGANLVLRQGRFGMFIGCSNYP
ECEHTELIDKPDETAITCPQCRTGHLVQRRSRYGKTFHSCDRYPECQFAINFKPIAGECPECHYPLLIEKKTAQGVKHFC
ASKQCGKPVSAE

Specific function: Unknown

COG id: COG0551

COG function: function code L; Zn-finger domain associated with topoisomerase type I

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: To H.influenzae HI_0656.1 [H]

Homologues:

Organism=Escherichia coli, GI48994931, Length=172, Percent_Identity=98.2558139534884, Blast_Score=351, Evalue=2e-98,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013498 [H]

Pfam domain/function: PF01396 zf-C4_Topoisom [H]

EC number: NA

Molecular weight: Translated: 19055; Mature: 19055

Theoretical pI: Translated: 8.13; Mature: 8.13

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

9.3 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
10.5 %Cys+Met (Translated Protein)
9.3 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
10.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRNNESCPKCGAELVIRSGKHGPFLGCSQYPACDYVRPLKSSADGHIVKVLEGQVCPVCG
CCCCCCCCHHCHHHEEECCCCCCCCCCCCCCCCCHHHHHHCCCCCCEEEEECCCCCCCCC
ANLVLRQGRFGMFIGCSNYPECEHTELIDKPDETAITCPQCRTGHLVQRRSRYGKTFHSC
CCEEEECCCCEEEEECCCCCCCCCCCCCCCCCCCEEECCCCCCCHHHHHHHHHCCHHHHH
DRYPECQFAINFKPIAGECPECHYPLLIEKKTAQGVKHFCASKQCGKPVSAE
CCCCCCEEEEEEECCCCCCCCCCCCEEEECHHHHHHHHHHHHHHCCCCCCCC
>Mature Secondary Structure
MRNNESCPKCGAELVIRSGKHGPFLGCSQYPACDYVRPLKSSADGHIVKVLEGQVCPVCG
CCCCCCCCHHCHHHEEECCCCCCCCCCCCCCCCCHHHHHHCCCCCCEEEEECCCCCCCCC
ANLVLRQGRFGMFIGCSNYPECEHTELIDKPDETAITCPQCRTGHLVQRRSRYGKTFHSC
CCEEEECCCCEEEEECCCCCCCCCCCCCCCCCCCEEECCCCCCCHHHHHHHHHCCHHHHH
DRYPECQFAINFKPIAGECPECHYPLLIEKKTAQGVKHFCASKQCGKPVSAE
CCCCCCEEEEEEECCCCCCCCCCCCEEEECHHHHHHHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]