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The map label for this gene is yhdY

Identifier: 30064599

GI number: 30064599

Start: 3394451

End: 3395554

Strand: Direct

Name: yhdY

Synonym: S3526

Alternate gene names: 30064599

Gene position: 3394451-3395554 (Clockwise)

Preceding gene: 30064596

Following gene: 30064600

Centisome position: 73.8

GC content: 51.72

Gene sequence:

>1104_bases
ATGACAAAAGTATTGCTGTCTCAGCCCTCGCGCCCGGCGAGCCATAACTCAAGCCGCGCGATGGTGTGGGTGCGAAAAAA
TCTGTTCTCCAGCTGGAGCAATAGCCTGCTGACTATTGGCTGCATATGGTTGATGTGGGAACTGATCCCACCGTTGCTGA
ACTGGGCATTTTTGCAGGCTAATTGGGTTGGCTCAACGCGTGCTGACTGCACAAAAGCCGGTGCCTGTTGGGTCTTCATT
CACGAACGATTTGGTCAGTTTATGTATGGACTTTACCCACACGACCAACGCTGGCGAATTAACCTCGCATTACTGATTGG
GCTTGTATCGATCGCACCAATGTTCTGGAAAATACTCCCGCATCGCGGTCGCTATATTGCGGCCTGGGCGGTGATTTACC
CACTGATTGTCTGGTGGCTGATGTATGGCGGTTTTTTTGGTCTTGAGCGGGTTGAAACCCGGCAATGGGGCGGGCTGACG
CTAACTTTAATTATTGCATCCGTTGGGATTGCGGGGGCGCTACCGTGGGGGATCTTACTGGCATTAGGTCGCCGCTCCCA
TATGCCGATTGTGCGTATCTTATCGGTCATTTTTATCGAGTTCTGGCGCGGCGTACCGCTGATTACCGTATTGTTTATGT
CTTCGGTCATGCTGCCGTTGTTTATGGCAGAAGGCACCAGTATCGACAAACTGATCCGCGCGCTGGTTGGCGTGATCCTG
TTTCAGTCAGCATATGTTGCGGAAGTCGTGCGAGGTGGATTACAGGCGCTGCCTAAAGGGCAATATGAAGCGGCAGAGTC
GCTGGCGTTGGGTTACTGGAAAACTCAGGGGCTGGTTATTCTGCCACAGGCGTTGAAGCTGGTAATTCCTGGGCTGGTAA
ATACCATCATCGCACTCTTCAAAGATACCAGCCTAGTGATCATCATCGGCTTGTTCGATCTTTTCAGTAGCGTTCAGCAG
GCAACCGTTGATCCCGCCTGGTTGGGTATGTCGACGGAAGGGTATGTTTTCGCCGCGCTGATCTACTGGATCTTTTGTTT
CAGCATGTCACGTTATAGCCAACATCTGGAAAAACGTTTTAACACCGGGCGTACACCGCATTGA

Upstream 100 bases:

>100_bases
CATGACCATGTCGGTCTATCTGATTATCAGCCTGACTATCTCGCTGCTGATGAATATCTATAACCGCCGCATCGCGATCG
TTGAACGCTAAGGAGTCATG

Downstream 100 bases:

>100_bases
GGACACTATGAGCCAAATTTTACTGCAACCTGCTAACGCGATGATTACGCTGGAAAACGTCCATAAATGGTATGGACAAT
TCCATGTTTTGAAAAATATA

Product: putative transport system permease protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 367; Mature: 366

Protein sequence:

>367_residues
MTKVLLSQPSRPASHNSSRAMVWVRKNLFSSWSNSLLTIGCIWLMWELIPPLLNWAFLQANWVGSTRADCTKAGACWVFI
HERFGQFMYGLYPHDQRWRINLALLIGLVSIAPMFWKILPHRGRYIAAWAVIYPLIVWWLMYGGFFGLERVETRQWGGLT
LTLIIASVGIAGALPWGILLALGRRSHMPIVRILSVIFIEFWRGVPLITVLFMSSVMLPLFMAEGTSIDKLIRALVGVIL
FQSAYVAEVVRGGLQALPKGQYEAAESLALGYWKTQGLVILPQALKLVIPGLVNTIIALFKDTSLVIIIGLFDLFSSVQQ
ATVDPAWLGMSTEGYVFAALIYWIFCFSMSRYSQHLEKRFNTGRTPH

Sequences:

>Translated_367_residues
MTKVLLSQPSRPASHNSSRAMVWVRKNLFSSWSNSLLTIGCIWLMWELIPPLLNWAFLQANWVGSTRADCTKAGACWVFI
HERFGQFMYGLYPHDQRWRINLALLIGLVSIAPMFWKILPHRGRYIAAWAVIYPLIVWWLMYGGFFGLERVETRQWGGLT
LTLIIASVGIAGALPWGILLALGRRSHMPIVRILSVIFIEFWRGVPLITVLFMSSVMLPLFMAEGTSIDKLIRALVGVIL
FQSAYVAEVVRGGLQALPKGQYEAAESLALGYWKTQGLVILPQALKLVIPGLVNTIIALFKDTSLVIIIGLFDLFSSVQQ
ATVDPAWLGMSTEGYVFAALIYWIFCFSMSRYSQHLEKRFNTGRTPH
>Mature_366_residues
TKVLLSQPSRPASHNSSRAMVWVRKNLFSSWSNSLLTIGCIWLMWELIPPLLNWAFLQANWVGSTRADCTKAGACWVFIH
ERFGQFMYGLYPHDQRWRINLALLIGLVSIAPMFWKILPHRGRYIAAWAVIYPLIVWWLMYGGFFGLERVETRQWGGLTL
TLIIASVGIAGALPWGILLALGRRSHMPIVRILSVIFIEFWRGVPLITVLFMSSVMLPLFMAEGTSIDKLIRALVGVILF
QSAYVAEVVRGGLQALPKGQYEAAESLALGYWKTQGLVILPQALKLVIPGLVNTIIALFKDTSLVIIIGLFDLFSSVQQA
TVDPAWLGMSTEGYVFAALIYWIFCFSMSRYSQHLEKRFNTGRTPH

Specific function: Probably part of the binding-protein-dependent transport system ydhWXYZ for an amino acid; probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG0765

COG function: function code E; ABC-type amino acid transport system, permease component

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI87082239, Length=367, Percent_Identity=98.9100817438692, Blast_Score=730, Evalue=0.0,
Organism=Escherichia coli, GI1788226, Length=205, Percent_Identity=39.0243902439024, Blast_Score=112, Evalue=3e-26,
Organism=Escherichia coli, GI1786873, Length=208, Percent_Identity=31.25, Blast_Score=109, Evalue=3e-25,
Organism=Escherichia coli, GI1787030, Length=204, Percent_Identity=32.3529411764706, Blast_Score=87, Evalue=1e-18,
Organism=Escherichia coli, GI1788645, Length=212, Percent_Identity=27.8301886792453, Blast_Score=71, Evalue=9e-14,
Organism=Escherichia coli, GI48994930, Length=120, Percent_Identity=33.3333333333333, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI1786874, Length=131, Percent_Identity=28.2442748091603, Blast_Score=67, Evalue=2e-12,
Organism=Escherichia coli, GI1787087, Length=184, Percent_Identity=29.3478260869565, Blast_Score=65, Evalue=7e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010065
- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 41426; Mature: 41295

Theoretical pI: Translated: 10.19; Mature: 10.19

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTKVLLSQPSRPASHNSSRAMVWVRKNLFSSWSNSLLTIGCIWLMWELIPPLLNWAFLQA
CCCCCCCCCCCCCCCCCCCEEEHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHC
NWVGSTRADCTKAGACWVFIHERFGQFMYGLYPHDQRWRINLALLIGLVSIAPMFWKILP
CCCCCCCCHHHCCCCCEEHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCC
HRGRYIAAWAVIYPLIVWWLMYGGFFGLERVETRQWGGLTLTLIIASVGIAGALPWGILL
CCCCCHHHHHHHHHHHHHHHHHCCHHCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHH
ALGRRSHMPIVRILSVIFIEFWRGVPLITVLFMSSVMLPLFMAEGTSIDKLIRALVGVIL
HHCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
FQSAYVAEVVRGGLQALPKGQYEAAESLALGYWKTQGLVILPQALKLVIPGLVNTIIALF
HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHEEECCCEEEEHHHHHHHHHHHHHHHHHHH
KDTSLVIIIGLFDLFSSVQQATVDPAWLGMSTEGYVFAALIYWIFCFSMSRYSQHLEKRF
CCCCCEEHHHHHHHHHHHHHHCCCHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
NTGRTPH
CCCCCCC
>Mature Secondary Structure 
TKVLLSQPSRPASHNSSRAMVWVRKNLFSSWSNSLLTIGCIWLMWELIPPLLNWAFLQA
CCCCCCCCCCCCCCCCCCEEEHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHC
NWVGSTRADCTKAGACWVFIHERFGQFMYGLYPHDQRWRINLALLIGLVSIAPMFWKILP
CCCCCCCCHHHCCCCCEEHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCC
HRGRYIAAWAVIYPLIVWWLMYGGFFGLERVETRQWGGLTLTLIIASVGIAGALPWGILL
CCCCCHHHHHHHHHHHHHHHHHCCHHCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHH
ALGRRSHMPIVRILSVIFIEFWRGVPLITVLFMSSVMLPLFMAEGTSIDKLIRALVGVIL
HHCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
FQSAYVAEVVRGGLQALPKGQYEAAESLALGYWKTQGLVILPQALKLVIPGLVNTIIALF
HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHEEECCCEEEEHHHHHHHHHHHHHHHHHHH
KDTSLVIIIGLFDLFSSVQQATVDPAWLGMSTEGYVFAALIYWIFCFSMSRYSQHLEKRF
CCCCCEEHHHHHHHHHHHHHHCCCHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
NTGRTPH
CCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]