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The map label for this gene is yhdW

Identifier: 30064596

GI number: 30064596

Start: 3391510

End: 3392427

Strand: Direct

Name: yhdW

Synonym: S3521

Alternate gene names: 30064596

Gene position: 3391510-3392427 (Clockwise)

Preceding gene: 30064593

Following gene: 30064599

Centisome position: 73.74

GC content: 48.91

Gene sequence:

>918_bases
GTGCAATGCGGGATCAGTGATGGATTACCTAGGTTCTCTTATGCCGATGCAGACGGTAAGTTTTCAGGTATTGATGTTGA
TGTTTGTCGTGGTGTTGCCGCTGCTGTATTTGGTGACGACACGAAAGTGAAATATACCCCACTCACAGCAAAAGAACGCT
TCACCGCTTTACAGTCAGGGGAAGTGGATTTGCTCTCCCGTAATACGACCTGGACTTCATCTCGCGATGCCGGGATGGGA
ATGGCATTTACCGGCGTCACTTATTACGACGGCATTGGCTTCCTGACGCACGATAAAGCGGGGCTAAAAAGCGCGAAAGA
ACTGGATGGCGCTACCGTCTGTATTCAGGCGGGTACTGATACCGAACTCAACGTCGCCGACTATTTCAAGGCAAACAATA
TGAAGTACACACCAGTGACTTTCGATCGCTCTGACGAATCAGCGAAGGCACTGGAATCTGGTCGCTGCGATACGCTGGCT
TCGGATCAGTCGCAACTGTATGCCTTGCGCATCAAATTAAGCAACCCGGCTGAATGGATTGTCTTACCGGAGGTTATCTC
TAAAGAACCGCTTGGGCCGGTAGTTCGTCGTGGCGATGATGAATGGTTCTCGATTGTACGCTGGACGCTTTTCGCCATGC
TAAATGCTGAAGAGATGGGCATCAATTCCCAGAACGTCGATGAAAAAGCGGCTAATCCAGCAACGCCTGATATGGCACAT
CTGTTGGGTAAAGAAGGCGATTACGGCAAGGATCTGAAGTTGGATAATAAATGGGCCTATAACATCATCAAACAGGTGAG
TAACTACTCGGAAATTTTTGAGCGTAACGTAGGTTCAGAAAGCCCGCTGAAAATTAAACGTGGGCAAAATAATCTCTGGA
ATAACGGCGGTATTCAGTACGCGCCGCCCGTGCGTTAA

Upstream 100 bases:

>100_bases
GATGATGATAGCCACACTGGCTGCCGCCAGCGTGCTGCTTGCCGTTGCAAATCAGGCGCATGCTGGCGCGACGCTTGATG
CCGTTCAGAAAAAAGGTTTT

Downstream 100 bases:

>100_bases
GTCGGTGTGAGGTAACGAGCGTCGCTACGGCGGCGCTCTCTTCAGCGTTATGCTTTCCGAGGTTTCTATGCCTCATCGCC
GCTCAACCGTTAAAGGCTCA

Product: putative periplasmic binding transport protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 305; Mature: 305

Protein sequence:

>305_residues
MQCGISDGLPRFSYADADGKFSGIDVDVCRGVAAAVFGDDTKVKYTPLTAKERFTALQSGEVDLLSRNTTWTSSRDAGMG
MAFTGVTYYDGIGFLTHDKAGLKSAKELDGATVCIQAGTDTELNVADYFKANNMKYTPVTFDRSDESAKALESGRCDTLA
SDQSQLYALRIKLSNPAEWIVLPEVISKEPLGPVVRRGDDEWFSIVRWTLFAMLNAEEMGINSQNVDEKAANPATPDMAH
LLGKEGDYGKDLKLDNKWAYNIIKQVSNYSEIFERNVGSESPLKIKRGQNNLWNNGGIQYAPPVR

Sequences:

>Translated_305_residues
MQCGISDGLPRFSYADADGKFSGIDVDVCRGVAAAVFGDDTKVKYTPLTAKERFTALQSGEVDLLSRNTTWTSSRDAGMG
MAFTGVTYYDGIGFLTHDKAGLKSAKELDGATVCIQAGTDTELNVADYFKANNMKYTPVTFDRSDESAKALESGRCDTLA
SDQSQLYALRIKLSNPAEWIVLPEVISKEPLGPVVRRGDDEWFSIVRWTLFAMLNAEEMGINSQNVDEKAANPATPDMAH
LLGKEGDYGKDLKLDNKWAYNIIKQVSNYSEIFERNVGSESPLKIKRGQNNLWNNGGIQYAPPVR
>Mature_305_residues
MQCGISDGLPRFSYADADGKFSGIDVDVCRGVAAAVFGDDTKVKYTPLTAKERFTALQSGEVDLLSRNTTWTSSRDAGMG
MAFTGVTYYDGIGFLTHDKAGLKSAKELDGATVCIQAGTDTELNVADYFKANNMKYTPVTFDRSDESAKALESGRCDTLA
SDQSQLYALRIKLSNPAEWIVLPEVISKEPLGPVVRRGDDEWFSIVRWTLFAMLNAEEMGINSQNVDEKAANPATPDMAH
LLGKEGDYGKDLKLDNKWAYNIIKQVSNYSEIFERNVGSESPLKIKRGQNNLWNNGGIQYAPPVR

Specific function: Probably part of the binding-protein-dependent transport system ydhWXYZ for an amino acid [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Periplasm (Probable) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial solute-binding protein 3 family [H]

Homologues:

Organism=Escherichia coli, GI1786876, Length=203, Percent_Identity=25.615763546798, Blast_Score=67, Evalue=1e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001638
- InterPro:   IPR018313 [H]

Pfam domain/function: PF00497 SBP_bac_3 [H]

EC number: NA

Molecular weight: Translated: 33541; Mature: 33541

Theoretical pI: Translated: 4.77; Mature: 4.77

Prosite motif: PS01039 SBP_BACTERIAL_3

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQCGISDGLPRFSYADADGKFSGIDVDVCRGVAAAVFGDDTKVKYTPLTAKERFTALQSG
CCCCCCCCCCCCEECCCCCCCCCCCHHHHHHHHHHHCCCCCEEEEECCCHHHHHHHHCCC
EVDLLSRNTTWTSSRDAGMGMAFTGVTYYDGIGFLTHDKAGLKSAKELDGATVCIQAGTD
CEEEEECCCCCCCCCCCCCCEEEECCEEECCCCEEECCCHHHCHHHHCCCEEEEEECCCC
TELNVADYFKANNMKYTPVTFDRSDESAKALESGRCDTLASDQSQLYALRIKLSNPAEWI
CCCCHHHHHCCCCEEECCEEECCCCHHHHHHHCCCCCCCCCCCCEEEEEEEEECCCCCEE
VLPEVISKEPLGPVVRRGDDEWFSIVRWTLFAMLNAEEMGINSQNVDEKAANPATPDMAH
EEHHHHCCCCCCHHHHCCCHHHHHHHHHHHHHHHCHHHHCCCCCCCCHHCCCCCCCHHHH
LLGKEGDYGKDLKLDNKWAYNIIKQVSNYSEIFERNVGSESPLKIKRGQNNLWNNGGIQY
HHCCCCCCCCCCEECCHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCCCCEEE
APPVR
CCCCC
>Mature Secondary Structure
MQCGISDGLPRFSYADADGKFSGIDVDVCRGVAAAVFGDDTKVKYTPLTAKERFTALQSG
CCCCCCCCCCCCEECCCCCCCCCCCHHHHHHHHHHHCCCCCEEEEECCCHHHHHHHHCCC
EVDLLSRNTTWTSSRDAGMGMAFTGVTYYDGIGFLTHDKAGLKSAKELDGATVCIQAGTD
CEEEEECCCCCCCCCCCCCCEEEECCEEECCCCEEECCCHHHCHHHHCCCEEEEEECCCC
TELNVADYFKANNMKYTPVTFDRSDESAKALESGRCDTLASDQSQLYALRIKLSNPAEWI
CCCCHHHHHCCCCEEECCEEECCCCHHHHHHHCCCCCCCCCCCCEEEEEEEEECCCCCEE
VLPEVISKEPLGPVVRRGDDEWFSIVRWTLFAMLNAEEMGINSQNVDEKAANPATPDMAH
EEHHHHCCCCCCHHHHCCCHHHHHHHHHHHHHHHCHHHHCCCCCCCCHHCCCCCCCHHHH
LLGKEGDYGKDLKLDNKWAYNIIKQVSNYSEIFERNVGSESPLKIKRGQNNLWNNGGIQY
HHCCCCCCCCCCEECCHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCCCCEEE
APPVR
CCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]