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The map label for this gene is agaR

Identifier: 30064468

GI number: 30064468

Start: 3259517

End: 3260341

Strand: Reverse

Name: agaR

Synonym: S3381

Alternate gene names: 30064468

Gene position: 3260341-3259517 (Counterclockwise)

Preceding gene: 30064480

Following gene: 30064466

Centisome position: 70.89

GC content: 52.24

Gene sequence:

>825_bases
ATGAGTAATACCGACGCTTCAGGTGAGAAGCGAGTGACAGGCACCAGCGAGCGACGAGAACAGATCATTCAGCGTCTGCG
ACAGCAAGGGAGTGTGCAGGTTAACGATCTGTCGGCATTGTATGGCGTATCTACTGTGACGATCCGCAATGATCTGGCGT
TTCTGGAAAAGCAGGGGATCGCTGTGCGTGCCTATGGTGGCGCGTTGATCTGCGATAGCACGACGCCGTCAGTCGAGCCA
TCAGTGGAAGATAAAAGCGCACTGAACACCGCGATGAAACGCAGCGTTGCGAAAGCTGCCGTTGAGTTGATTCAGCCAGG
TCATCGGGTGATCCTCGATTCCGGGACCACCACTTTTGAGATTGCTCGTCTGATGCGCAAGTACACTGACGTAATTGCGA
TGACCAACGGTATGAACGTGGCTAATGCGTTGCTGGAAGCGGAAGGCGTTGAGCTGCTGATGACCGGCGGGCATTTGCGC
CGTCAGTCGCAATCTTTTTACGGCGATCAGGCTGAGCAATCGCTGCAAAATTACCACTTCGATATGCTGTTTCTTGGTGT
AGATGCGATCGATCTGGAGCGCGGCGTCAGCACACATAATGAAGATGAAGCCCGTTTAAGCCGTCGGATGTGCGAAGTTG
CGGAACGGATCATCGTGGTCACCGATTCCAGTAAATTCAATCGTTCCAGTTTACATAAGATCATTGATACTCAACGTATC
GACATGATCATTGTTGATGAAGGCATTCCTGCGGATAGTCTGGAAGGACTGCGAAAGGCTGGGGTTGAAGTGATTCTGGT
CGGGGATCACGCGTCTTCGCTGTGA

Upstream 100 bases:

>100_bases
GTAGCTTGCGCCAATGGGCAAGGTGGGCTTGCATTTGCTTAATAGAAAGGCGTTAATAGGCAAAACGAAATGAAACGAAA
GTTTTACGAAAGGACTTACT

Downstream 100 bases:

>100_bases
CTCAATATGCCCGATAAACGTGTGCTATCGGGCATAATACGAATTGAATTATCAGGTCACCGGTGCTGGGTTAAACACCG
CCAGCTGGTTATGCAGTCCC

Product: DNA-binding transcriptional regulator AgaR

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 274; Mature: 273

Protein sequence:

>274_residues
MSNTDASGEKRVTGTSERREQIIQRLRQQGSVQVNDLSALYGVSTVTIRNDLAFLEKQGIAVRAYGGALICDSTTPSVEP
SVEDKSALNTAMKRSVAKAAVELIQPGHRVILDSGTTTFEIARLMRKYTDVIAMTNGMNVANALLEAEGVELLMTGGHLR
RQSQSFYGDQAEQSLQNYHFDMLFLGVDAIDLERGVSTHNEDEARLSRRMCEVAERIIVVTDSSKFNRSSLHKIIDTQRI
DMIIVDEGIPADSLEGLRKAGVEVILVGDHASSL

Sequences:

>Translated_274_residues
MSNTDASGEKRVTGTSERREQIIQRLRQQGSVQVNDLSALYGVSTVTIRNDLAFLEKQGIAVRAYGGALICDSTTPSVEP
SVEDKSALNTAMKRSVAKAAVELIQPGHRVILDSGTTTFEIARLMRKYTDVIAMTNGMNVANALLEAEGVELLMTGGHLR
RQSQSFYGDQAEQSLQNYHFDMLFLGVDAIDLERGVSTHNEDEARLSRRMCEVAERIIVVTDSSKFNRSSLHKIIDTQRI
DMIIVDEGIPADSLEGLRKAGVEVILVGDHASSL
>Mature_273_residues
SNTDASGEKRVTGTSERREQIIQRLRQQGSVQVNDLSALYGVSTVTIRNDLAFLEKQGIAVRAYGGALICDSTTPSVEPS
VEDKSALNTAMKRSVAKAAVELIQPGHRVILDSGTTTFEIARLMRKYTDVIAMTNGMNVANALLEAEGVELLMTGGHLRR
QSQSFYGDQAEQSLQNYHFDMLFLGVDAIDLERGVSTHNEDEARLSRRMCEVAERIIVVTDSSKFNRSSLHKIIDTQRID
MIIVDEGIPADSLEGLRKAGVEVILVGDHASSL

Specific function: Probable repressor for the aga operon for N-acetyl galactosamine transport and metabolism [H]

COG id: COG1349

COG function: function code KG; Transcriptional regulators of sugar metabolism

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH deoR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1789519, Length=269, Percent_Identity=98.8847583643123, Blast_Score=543, Evalue=1e-156,
Organism=Escherichia coli, GI1789059, Length=254, Percent_Identity=35.4330708661417, Blast_Score=182, Evalue=3e-47,
Organism=Escherichia coli, GI226510968, Length=246, Percent_Identity=30.8943089430894, Blast_Score=122, Evalue=2e-29,
Organism=Escherichia coli, GI1789829, Length=251, Percent_Identity=27.8884462151394, Blast_Score=112, Evalue=2e-26,
Organism=Escherichia coli, GI1787540, Length=251, Percent_Identity=31.8725099601594, Blast_Score=112, Evalue=2e-26,
Organism=Escherichia coli, GI87082344, Length=251, Percent_Identity=26.6932270916335, Blast_Score=103, Evalue=1e-23,
Organism=Escherichia coli, GI1788069, Length=250, Percent_Identity=24.8, Blast_Score=100, Evalue=9e-23,
Organism=Escherichia coli, GI1787063, Length=240, Percent_Identity=27.5, Blast_Score=93, Evalue=2e-20,
Organism=Escherichia coli, GI1790753, Length=250, Percent_Identity=26, Blast_Score=92, Evalue=4e-20,
Organism=Escherichia coli, GI1790635, Length=254, Percent_Identity=27.1653543307087, Blast_Score=78, Evalue=7e-16,
Organism=Escherichia coli, GI1789170, Length=239, Percent_Identity=27.6150627615063, Blast_Score=73, Evalue=2e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014036
- InterPro:   IPR001034
- InterPro:   IPR018356
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00455 DeoR; PF08220 HTH_DeoR [H]

EC number: NA

Molecular weight: Translated: 30053; Mature: 29922

Theoretical pI: Translated: 5.21; Mature: 5.21

Prosite motif: PS00894 HTH_DEOR_1 ; PS51000 HTH_DEOR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSNTDASGEKRVTGTSERREQIIQRLRQQGSVQVNDLSALYGVSTVTIRNDLAFLEKQGI
CCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEHHHHHHCCEEEEEEHHHHHHHHCCE
AVRAYGGALICDSTTPSVEPSVEDKSALNTAMKRSVAKAAVELIQPGHRVILDSGTTTFE
EEEEECCEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCHHHH
IARLMRKYTDVIAMTNGMNVANALLEAEGVELLMTGGHLRRQSQSFYGDQAEQSLQNYHF
HHHHHHHHHHHHHHCCCCHHHHHHHHHCCCEEEEECCHHHHHHHHHCCCHHHHHHHHCCC
DMLFLGVDAIDLERGVSTHNEDEARLSRRMCEVAERIIVVTDSSKFNRSSLHKIIDTQRI
EEEEECCCHHHHHCCCCCCCHHHHHHHHHHHHHHHEEEEEECCCCCCHHHHHHHHCCCCC
DMIIVDEGIPADSLEGLRKAGVEVILVGDHASSL
CEEEEECCCCHHHHHHHHHCCCEEEEECCCCCCC
>Mature Secondary Structure 
SNTDASGEKRVTGTSERREQIIQRLRQQGSVQVNDLSALYGVSTVTIRNDLAFLEKQGI
CCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEHHHHHHCCEEEEEEHHHHHHHHCCE
AVRAYGGALICDSTTPSVEPSVEDKSALNTAMKRSVAKAAVELIQPGHRVILDSGTTTFE
EEEEECCEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCHHHH
IARLMRKYTDVIAMTNGMNVANALLEAEGVELLMTGGHLRRQSQSFYGDQAEQSLQNYHF
HHHHHHHHHHHHHHCCCCHHHHHHHHHCCCEEEEECCHHHHHHHHHCCCHHHHHHHHCCC
DMLFLGVDAIDLERGVSTHNEDEARLSRRMCEVAERIIVVTDSSKFNRSSLHKIIDTQRI
EEEEECCCHHHHHCCCCCCCHHHHHHHHHHHHHHHEEEEEECCCCCCHHHHHHHHCCCCC
DMIIVDEGIPADSLEGLRKAGVEVILVGDHASSL
CEEEEECCCCHHHHHHHHHCCCEEEEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]