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The map label for this gene is ydbD

Identifier: 30062878

GI number: 30062878

Start: 1426639

End: 1428273

Strand: Direct

Name: ydbD

Synonym: S1463

Alternate gene names: 30062878

Gene position: 1426639-1428273 (Clockwise)

Preceding gene: 30062875

Following gene: 30062879

Centisome position: 31.02

GC content: 45.14

Gene sequence:

>1635_bases
ATGGCAGGGAATGTCTGTAATCAGATGAAAAAAGAAGCGCTGTTTCGCCCTAAGCCTTCTCCTGAGTTAGTGCAGGAATT
GCAAATGCTGGATGAAGGCAACGTTGCTGCATTTGAAGGACGAGATATTGCGACATTTGATCTTGCCATAATGCGAACTC
TCCCAAGGCTTAAAGGAATTTCAGCTAACCTACGCAAACAACTTATTAATAGCAATGATGAACAAACGATTGAAAGTATG
GCGAGATATATGCCTGACAATGAGATTCTGGAGTTGACCGATCAGCAATTGGGTTACCAGCCTGTTGTTCTGGGGTTGCT
CGACCGTGAACCGCTCTCTGTCGAAATAATGACGCGAATGAGTCGTCTACCTGATGGTGTCGGTCCGTTGAATCTTGCGC
TACGTGAAAATCTCCCTCTGGATATCGTCATGACTCTGGCGAAAAGAGATTGGGATATGATCATTCAGGAGCTTTATAAA
GATGCGTGGTTATTGCCCGAATCCATTATTGATGGCTATATCCGCAGTGATGATTCCTCTATTCGTCAGGTCGGTGCTGG
AGGACAACTCACTTACAATCAGGCAATGCAGTTGGCGAACGATTCATCAAACAATGTTGTCACAAGCTTAGCGTTCAAGC
TGGCAGAGATGAAACACCATGGTCAATTATTGCGGATGACGCCACAAGAGAGTGACAAAGTTGCAGCCTATTTATACCAA
AAATTCGAGAATGACGATGATCTAATACGTGTGTTATTTTTAGCATTGCCAGATAACTTACAGTTTAATTTTGTTAAAAG
GATGGAGAAAAAATCCCCTGCCTACTTTTGCTGTCGGGATATGCAGGTAATTCACTCTGACGCTGCTTTACAACGGTTAT
TGACACGTTTCAACGATCCTGAGGGGTGGAGTAATCTGGCGAAAAATCAGTATCTGAGCACGTCGATGAAACAAAAAATT
TGGCAACGTGCTTTATCGCATCGGAAAAATAATCCGAAAGCAGATTCAGATGCATATGAAACCAGCGCTGATATGATTTT
GTCTGAGCTGATTAGCCACGGCGAAGTTGATGACCAGATGCTATTAAATGCCGCCGCCCTGATACGTTTGGAAGACTGGG
ACTTTTTAGAGAGTGCATTAGTTAGTTGGGATAATTTACCCGCTGTTGTTCTCAAGGAATTACAGCAAAACACGCCACGC
AATGATATTTGGGCGAAGTTTTTTCTGAGGCAGGAAAATAGCTCCCGTGCGCAGGTTGATGAAGCATTACGTGTTTATTA
TGCACTCGACCCCGATGCGTTAGCACAACTGGATGTACTGGCAAAACAACCGGATCGTATATGGTGGAGTACACTGGCGA
AAAGCAATCTCACATTTTTCAAGTTCGGCGCACTTAGCAACCGCCACACCCCCTCTGCGGCACTGGCGGCAGAAATTGAT
CCCGAGTGGTGGATTGTGGCGATGAATAATCCCCGCTTTCCAGTTGATGTATTGAAGGCGAGGCTGAAACGTGATCCTTT
GCTGGCGTTAGAGCTTGTTAACCCTGAACTGGATTTAGTCCGCCAGCTGGCGCTTAACGGTAAGACGCGCGCAATACGGG
AACAAGCGATGAGGAAACTTGATGAGTTGTATTGA

Upstream 100 bases:

>100_bases
CAAAAAAGCGCTGATGATAATAAATCCTGATGCATATTATTGGGGTCTAATAAATGATGAAGATGCTCTGAAAGAAATTT
TTAAGCGAAGCAATATTCGC

Downstream 100 bases:

>100_bases
ATAACAGCGTAATAATTTTTAACTACTTGATTTATTGGGGATAATCATTCCTGACAGTGAGCCCCCAATACCTTGATATA
TTCTGAATTTTTAATGAAGC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 544; Mature: 543

Protein sequence:

>544_residues
MAGNVCNQMKKEALFRPKPSPELVQELQMLDEGNVAAFEGRDIATFDLAIMRTLPRLKGISANLRKQLINSNDEQTIESM
ARYMPDNEILELTDQQLGYQPVVLGLLDREPLSVEIMTRMSRLPDGVGPLNLALRENLPLDIVMTLAKRDWDMIIQELYK
DAWLLPESIIDGYIRSDDSSIRQVGAGGQLTYNQAMQLANDSSNNVVTSLAFKLAEMKHHGQLLRMTPQESDKVAAYLYQ
KFENDDDLIRVLFLALPDNLQFNFVKRMEKKSPAYFCCRDMQVIHSDAALQRLLTRFNDPEGWSNLAKNQYLSTSMKQKI
WQRALSHRKNNPKADSDAYETSADMILSELISHGEVDDQMLLNAAALIRLEDWDFLESALVSWDNLPAVVLKELQQNTPR
NDIWAKFFLRQENSSRAQVDEALRVYYALDPDALAQLDVLAKQPDRIWWSTLAKSNLTFFKFGALSNRHTPSAALAAEID
PEWWIVAMNNPRFPVDVLKARLKRDPLLALELVNPELDLVRQLALNGKTRAIREQAMRKLDELY

Sequences:

>Translated_544_residues
MAGNVCNQMKKEALFRPKPSPELVQELQMLDEGNVAAFEGRDIATFDLAIMRTLPRLKGISANLRKQLINSNDEQTIESM
ARYMPDNEILELTDQQLGYQPVVLGLLDREPLSVEIMTRMSRLPDGVGPLNLALRENLPLDIVMTLAKRDWDMIIQELYK
DAWLLPESIIDGYIRSDDSSIRQVGAGGQLTYNQAMQLANDSSNNVVTSLAFKLAEMKHHGQLLRMTPQESDKVAAYLYQ
KFENDDDLIRVLFLALPDNLQFNFVKRMEKKSPAYFCCRDMQVIHSDAALQRLLTRFNDPEGWSNLAKNQYLSTSMKQKI
WQRALSHRKNNPKADSDAYETSADMILSELISHGEVDDQMLLNAAALIRLEDWDFLESALVSWDNLPAVVLKELQQNTPR
NDIWAKFFLRQENSSRAQVDEALRVYYALDPDALAQLDVLAKQPDRIWWSTLAKSNLTFFKFGALSNRHTPSAALAAEID
PEWWIVAMNNPRFPVDVLKARLKRDPLLALELVNPELDLVRQLALNGKTRAIREQAMRKLDELY
>Mature_543_residues
AGNVCNQMKKEALFRPKPSPELVQELQMLDEGNVAAFEGRDIATFDLAIMRTLPRLKGISANLRKQLINSNDEQTIESMA
RYMPDNEILELTDQQLGYQPVVLGLLDREPLSVEIMTRMSRLPDGVGPLNLALRENLPLDIVMTLAKRDWDMIIQELYKD
AWLLPESIIDGYIRSDDSSIRQVGAGGQLTYNQAMQLANDSSNNVVTSLAFKLAEMKHHGQLLRMTPQESDKVAAYLYQK
FENDDDLIRVLFLALPDNLQFNFVKRMEKKSPAYFCCRDMQVIHSDAALQRLLTRFNDPEGWSNLAKNQYLSTSMKQKIW
QRALSHRKNNPKADSDAYETSADMILSELISHGEVDDQMLLNAAALIRLEDWDFLESALVSWDNLPAVVLKELQQNTPRN
DIWAKFFLRQENSSRAQVDEALRVYYALDPDALAQLDVLAKQPDRIWWSTLAKSNLTFFKFGALSNRHTPSAALAAEIDP
EWWIVAMNNPRFPVDVLKARLKRDPLLALELVNPELDLVRQLALNGKTRAIREQAMRKLDELY

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: To E.coli ykiA [H]

Homologues:

Organism=Escherichia coli, GI87081900, Length=544, Percent_Identity=98.1617647058823, Blast_Score=1097, Evalue=0.0,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 62179; Mature: 62048

Theoretical pI: Translated: 4.98; Mature: 4.98

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
3.7 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAGNVCNQMKKEALFRPKPSPELVQELQMLDEGNVAAFEGRDIATFDLAIMRTLPRLKGI
CCCHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHHHCCC
SANLRKQLINSNDEQTIESMARYMPDNEILELTDQQLGYQPVVLGLLDREPLSVEIMTRM
CHHHHHHHHCCCHHHHHHHHHHHCCCCHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHH
SRLPDGVGPLNLALRENLPLDIVMTLAKRDWDMIIQELYKDAWLLPESIIDGYIRSDDSS
HHCCCCCCCCHHHHHCCCCHHHHHHHHHCCHHHHHHHHHHHHCCCCHHHHHHHHCCCCHH
IRQVGAGGQLTYNQAMQLANDSSNNVVTSLAFKLAEMKHHGQLLRMTPQESDKVAAYLYQ
HHHHCCCCCEEHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCEEEECCCCCHHHHHHHHH
KFENDDDLIRVLFLALPDNLQFNFVKRMEKKSPAYFCCRDMQVIHSDAALQRLLTRFNDP
HHCCCHHHHHHHHHHCCCCCCHHHHHHHHHCCCCEEEHHHHHHHHHHHHHHHHHHHCCCC
EGWSNLAKNQYLSTSMKQKIWQRALSHRKNNPKADSDAYETSADMILSELISHGEVDDQM
CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHH
LLNAAALIRLEDWDFLESALVSWDNLPAVVLKELQQNTPRNDIWAKFFLRQENSSRAQVD
HHHHHHHEEECCHHHHHHHHHCCCCCHHHHHHHHHHCCCCHHHHHHHHHHCCCCCHHHHH
EALRVYYALDPDALAQLDVLAKQPDRIWWSTLAKSNLTFFKFGALSNRHTPSAALAAEID
HHHHHHEECCHHHHHHHHHHHCCCCHHHHHHHHHCCCCEEEECCCCCCCCCCHHHEEECC
PEWWIVAMNNPRFPVDVLKARLKRDPLLALELVNPELDLVRQLALNGKTRAIREQAMRKL
CCEEEEEECCCCCCHHHHHHHHCCCCEEEEEECCCHHHHHHHHHHCCHHHHHHHHHHHHH
DELY
HHCC
>Mature Secondary Structure 
AGNVCNQMKKEALFRPKPSPELVQELQMLDEGNVAAFEGRDIATFDLAIMRTLPRLKGI
CCHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHHHCCC
SANLRKQLINSNDEQTIESMARYMPDNEILELTDQQLGYQPVVLGLLDREPLSVEIMTRM
CHHHHHHHHCCCHHHHHHHHHHHCCCCHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHH
SRLPDGVGPLNLALRENLPLDIVMTLAKRDWDMIIQELYKDAWLLPESIIDGYIRSDDSS
HHCCCCCCCCHHHHHCCCCHHHHHHHHHCCHHHHHHHHHHHHCCCCHHHHHHHHCCCCHH
IRQVGAGGQLTYNQAMQLANDSSNNVVTSLAFKLAEMKHHGQLLRMTPQESDKVAAYLYQ
HHHHCCCCCEEHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCEEEECCCCCHHHHHHHHH
KFENDDDLIRVLFLALPDNLQFNFVKRMEKKSPAYFCCRDMQVIHSDAALQRLLTRFNDP
HHCCCHHHHHHHHHHCCCCCCHHHHHHHHHCCCCEEEHHHHHHHHHHHHHHHHHHHCCCC
EGWSNLAKNQYLSTSMKQKIWQRALSHRKNNPKADSDAYETSADMILSELISHGEVDDQM
CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHH
LLNAAALIRLEDWDFLESALVSWDNLPAVVLKELQQNTPRNDIWAKFFLRQENSSRAQVD
HHHHHHHEEECCHHHHHHHHHCCCCCHHHHHHHHHHCCCCHHHHHHHHHHCCCCCHHHHH
EALRVYYALDPDALAQLDVLAKQPDRIWWSTLAKSNLTFFKFGALSNRHTPSAALAAEID
HHHHHHEECCHHHHHHHHHHHCCCCHHHHHHHHHCCCCEEEECCCCCCCCCCHHHEEECC
PEWWIVAMNNPRFPVDVLKARLKRDPLLALELVNPELDLVRQLALNGKTRAIREQAMRKL
CCEEEEEECCCCCCHHHHHHHHCCCCEEEEEECCCHHHHHHHHHHCCHHHHHHHHHHHHH
DELY
HHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503; 1665988 [H]