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The map label for this gene is ybcK [H]

Identifier: 30062591

GI number: 30062591

Start: 1104987

End: 1105919

Strand: Reverse

Name: ybcK [H]

Synonym: S1136

Alternate gene names: 30062591

Gene position: 1105919-1104987 (Counterclockwise)

Preceding gene: 30062592

Following gene: 30062583

Centisome position: 24.05

GC content: 43.62

Gene sequence:

>933_bases
ATGAGACGGGCAATCAGCTACATCAGATTTTCAAGTGAACGACAACTGAAAGGGGACTCTGTACGCCGACAATCTAAGCT
GGTTACTGACTGGCTTGATAAGAACCCTGAGTTTTACTTGGATTCATCCTTGAGCTTTAAAGATTTGGGGAAAAGTGCTT
TTAGTGGTAAGCACCTGAAAGGTGGTCTAGGTGACTTTTTAACCGCTATCGAGAAAGGGCTTGTTAAAGCTGGTGATACG
CTACTAATCGAGAGTTTAGACCGTCTGTCACGTCAGGATATTGATATTGCTTCTGAGCTATTACGCCGTATCTTAAGGGC
TGGTGTAGATGTAGTCACACTGAGCGATGGAGAACATTACACACGAGAAAGTTTAAAAGACCCGTTAGCCCTGATTAAAA
GCATTCTGATAATGCAGCGGGCGCATGAGGAAAGTTTGAGAAAGTCTGAGCGTGTCCAAGCTGCATGGAACCGTAAAAAA
GAACTCATCTCCGAAGGTATCAAGGTATCTAGGCGTTGTCCTGCATGGTTAAGGCTGAATGATGACCGTCGAACATTCAC
AATCATTCCTGATAAAGTGGAAGTTGTTAAACGAGCATTTGACCTGAGATTACAGGGTTTAAGCTTTTGGGCTATCACCA
GAACTTTAAACGATGAAGGTCACTTGTCATTGAATCAATACACACCCAAACAAAAGGGGTGGTCTGATACTGCTGTAAAG
AAACTGCTCAGAAATCGTGCTGTGATTGGATGTTTCACACCTGCTGGACGTGAAGAAGTTCAGGGTTACTACCCCGCAAT
AATCAGTGAGTCACTATTCTATCGAGTACAGCAACTGAACACAGGGCAATATGGTAGGGCTTCTGTATCAAGTAATCCGC
TATCAGTCAACTTGTTCAGGGGTATCATCAAATGTGAGGTGTACTGGCAATAG

Upstream 100 bases:

>100_bases
TTGAGCAGCTTGGTGTTACCGGCCACTCCGCCCTGAATATGTGGTCCGGTATTGTCTTCAGTATAATGGGTTCCTAAACA
CATCATTTTAGGTATTGAAT

Downstream 100 bases:

>100_bases
CGGACACTACCATTTGTTCTTTTTTTAAGCAGCTATCTGATGATATTTTTCCCTGAAGGCTGCCGGGGAGATATTCCCCA
GACGAGAGTGACGACGCTGA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 310; Mature: 310

Protein sequence:

>310_residues
MRRAISYIRFSSERQLKGDSVRRQSKLVTDWLDKNPEFYLDSSLSFKDLGKSAFSGKHLKGGLGDFLTAIEKGLVKAGDT
LLIESLDRLSRQDIDIASELLRRILRAGVDVVTLSDGEHYTRESLKDPLALIKSILIMQRAHEESLRKSERVQAAWNRKK
ELISEGIKVSRRCPAWLRLNDDRRTFTIIPDKVEVVKRAFDLRLQGLSFWAITRTLNDEGHLSLNQYTPKQKGWSDTAVK
KLLRNRAVIGCFTPAGREEVQGYYPAIISESLFYRVQQLNTGQYGRASVSSNPLSVNLFRGIIKCEVYWQ

Sequences:

>Translated_310_residues
MRRAISYIRFSSERQLKGDSVRRQSKLVTDWLDKNPEFYLDSSLSFKDLGKSAFSGKHLKGGLGDFLTAIEKGLVKAGDT
LLIESLDRLSRQDIDIASELLRRILRAGVDVVTLSDGEHYTRESLKDPLALIKSILIMQRAHEESLRKSERVQAAWNRKK
ELISEGIKVSRRCPAWLRLNDDRRTFTIIPDKVEVVKRAFDLRLQGLSFWAITRTLNDEGHLSLNQYTPKQKGWSDTAVK
KLLRNRAVIGCFTPAGREEVQGYYPAIISESLFYRVQQLNTGQYGRASVSSNPLSVNLFRGIIKCEVYWQ
>Mature_310_residues
MRRAISYIRFSSERQLKGDSVRRQSKLVTDWLDKNPEFYLDSSLSFKDLGKSAFSGKHLKGGLGDFLTAIEKGLVKAGDT
LLIESLDRLSRQDIDIASELLRRILRAGVDVVTLSDGEHYTRESLKDPLALIKSILIMQRAHEESLRKSERVQAAWNRKK
ELISEGIKVSRRCPAWLRLNDDRRTFTIIPDKVEVVKRAFDLRLQGLSFWAITRTLNDEGHLSLNQYTPKQKGWSDTAVK
KLLRNRAVIGCFTPAGREEVQGYYPAIISESLFYRVQQLNTGQYGRASVSSNPLSVNLFRGIIKCEVYWQ

Specific function: Unknown

COG id: COG1961

COG function: function code L; Site-specific recombinases, DNA invertase Pin homologs

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 recombinase domain [H]

Homologues:

Organism=Escherichia coli, GI1786756, Length=314, Percent_Identity=43.312101910828, Blast_Score=271, Evalue=6e-74,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011109
- InterPro:   IPR006119 [H]

Pfam domain/function: PF07508 Recombinase; PF00239 Resolvase [H]

EC number: NA

Molecular weight: Translated: 35437; Mature: 35437

Theoretical pI: Translated: 10.30; Mature: 10.30

Prosite motif: PS00398 RECOMBINASES_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
0.6 %Met     (Translated Protein)
1.6 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
0.6 %Met     (Mature Protein)
1.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRRAISYIRFSSERQLKGDSVRRQSKLVTDWLDKNPEFYLDSSLSFKDLGKSAFSGKHLK
CCCHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCCEEECCCCCHHHHCHHHCCCCCCC
GGLGDFLTAIEKGLVKAGDTLLIESLDRLSRQDIDIASELLRRILRAGVDVVTLSDGEHY
CCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCEEEECCCCHH
TRESLKDPLALIKSILIMQRAHEESLRKSERVQAAWNRKKELISEGIKVSRRCPAWLRLN
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEC
DDRRTFTIIPDKVEVVKRAFDLRLQGLSFWAITRTLNDEGHLSLNQYTPKQKGWSDTAVK
CCCEEEEECCCHHHHHHHHHHHHHCCCEEEEEEEEECCCCCEEECCCCCCCCCCCHHHHH
KLLRNRAVIGCFTPAGREEVQGYYPAIISESLFYRVQQLNTGQYGRASVSSNPLSVNLFR
HHHHCCCEEEEECCCCHHHHCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHH
GIIKCEVYWQ
HEEEEEEEEC
>Mature Secondary Structure
MRRAISYIRFSSERQLKGDSVRRQSKLVTDWLDKNPEFYLDSSLSFKDLGKSAFSGKHLK
CCCHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCCEEECCCCCHHHHCHHHCCCCCCC
GGLGDFLTAIEKGLVKAGDTLLIESLDRLSRQDIDIASELLRRILRAGVDVVTLSDGEHY
CCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCEEEECCCCHH
TRESLKDPLALIKSILIMQRAHEESLRKSERVQAAWNRKKELISEGIKVSRRCPAWLRLN
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEC
DDRRTFTIIPDKVEVVKRAFDLRLQGLSFWAITRTLNDEGHLSLNQYTPKQKGWSDTAVK
CCCEEEEECCCHHHHHHHHHHHHHCCCEEEEEEEEECCCCCEEECCCCCCCCCCCHHHHH
KLLRNRAVIGCFTPAGREEVQGYYPAIISESLFYRVQQLNTGQYGRASVSSNPLSVNLFR
HHHHCCCEEEEECCCCHHHHCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHH
GIIKCEVYWQ
HEEEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]