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The map label for this gene is xerD

Identifier: 30024035

GI number: 30024035

Start: 1310002

End: 1310718

Strand: Reverse

Name: xerD

Synonym: L109747

Alternate gene names: 30024035

Gene position: 1310718-1310002 (Counterclockwise)

Preceding gene: 15673261

Following gene: 15673259

Centisome position: 55.41

GC content: 30.96

Gene sequence:

>717_bases
ATGAAATTACCAAACGAGATTGACGAGTATTTAGCAAGCAGAAATTTTTCAGAGAATACTCGTTCAAATTACCATTATGA
TTTAGTTTCTTTGCAGGCTTTCTTTGAAGATAAGTCACTCACAACAGAAAACTTAGAACTTTACAAAATTCAAATTAGTA
ATCTTTCGCCAGCAGCACAGCGAAGGAAGATTTCGAGTGCAAATCAATATTTGCTTTTCCTGTATCAAAGACAAAAAGTT
GACCAGTACTTTAAAATTAAACAAGTCGTTCAAAAAAAATCACAGACTGCTCAAAGTTATCATCCAATGATTAAGGAATT
TCCTGAGTTCTATGGTCCTTTGACCTGTCCAGGACAATTTTTAGCCTTATTAATTTTAGAATTTGGTTTAAATTTTGCTG
AGATACAAAAATTGAAATGGGAAAATTTTAATTGGAACTTTAAATATCTCACGATTGAAAAAGCCGGAATAAAACGAGTT
TTACCAATTAGAGAAAAATTTGCCATAAGAGTTAAAGCCATTAATAATGCTGATGAATTATTCGCAAAATCTCGTCAATT
TCTTTATACTGAATTGAAAAAATTTACGAACTATTCTTCCAAAGAAATTAGAGAACAGTATATCTTGCATCAGGTTAAAG
CAGGGAAGTCAATTTATGAACTGGCAACTCTACTTGGTTTAACAACTATTACAACGCTTGAAAAATATTATAGATAG

Upstream 100 bases:

>100_bases
TTTCTCCCAGTAGTCAAAAGACAGGAATTTATGGGGATTGTTGTTAGGCAAGAAATATTAAAGGCCTTTAGTGCCTTTGC
TCACGACTTTACAAAATATT

Downstream 100 bases:

>100_bases
GAATTTACACTATTTTTATTATGTAAACTATGATTAAAGAAATCAATATAAAAATTAAAAACTTCGAGGGTCCTCTCGAC
CTTTTATTGCATTTGGTAAG

Product: site-specific tyrosine recombinase XerD-like protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 238; Mature: 238

Protein sequence:

>238_residues
MKLPNEIDEYLASRNFSENTRSNYHYDLVSLQAFFEDKSLTTENLELYKIQISNLSPAAQRRKISSANQYLLFLYQRQKV
DQYFKIKQVVQKKSQTAQSYHPMIKEFPEFYGPLTCPGQFLALLILEFGLNFAEIQKLKWENFNWNFKYLTIEKAGIKRV
LPIREKFAIRVKAINNADELFAKSRQFLYTELKKFTNYSSKEIREQYILHQVKAGKSIYELATLLGLTTITTLEKYYR

Sequences:

>Translated_238_residues
MKLPNEIDEYLASRNFSENTRSNYHYDLVSLQAFFEDKSLTTENLELYKIQISNLSPAAQRRKISSANQYLLFLYQRQKV
DQYFKIKQVVQKKSQTAQSYHPMIKEFPEFYGPLTCPGQFLALLILEFGLNFAEIQKLKWENFNWNFKYLTIEKAGIKRV
LPIREKFAIRVKAINNADELFAKSRQFLYTELKKFTNYSSKEIREQYILHQVKAGKSIYELATLLGLTTITTLEKYYR
>Mature_238_residues
MKLPNEIDEYLASRNFSENTRSNYHYDLVSLQAFFEDKSLTTENLELYKIQISNLSPAAQRRKISSANQYLLFLYQRQKV
DQYFKIKQVVQKKSQTAQSYHPMIKEFPEFYGPLTCPGQFLALLILEFGLNFAEIQKLKWENFNWNFKYLTIEKAGIKRV
LPIREKFAIRVKAINNADELFAKSRQFLYTELKKFTNYSSKEIREQYILHQVKAGKSIYELATLLGLTTITTLEKYYR

Specific function: Putative tyrosine recombinase. Not involved in the cutting and rejoining of the recombining DNA molecules on dif(SL) site

COG id: COG0582

COG function: function code L; Integrase

Gene ontology:

Cell location: Cytoplasm

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'phage' integrase family. XerD-like subfamily

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): XERDL_LACLA (Q9CG32)

Other databases:

- EMBL:   AE005176
- PIR:   F86784
- RefSeq:   NP_267434.2
- GeneID:   1114927
- GenomeReviews:   AE005176_GR
- KEGG:   lla:L109747
- NMPDR:   fig|272623.1.peg.1313
- HOGENOM:   HBG697235
- ProtClustDB:   PRK02436
- BioCyc:   LLAC272623:L109747-MONOMER
- GO:   GO:0005737
- HAMAP:   MF_01817
- InterPro:   IPR011010
- InterPro:   IPR013762
- InterPro:   IPR023109
- InterPro:   IPR020876
- Gene3D:   G3DSA:1.10.150.130
- Gene3D:   G3DSA:1.10.443.10

Pfam domain/function: SSF56349 DNA_brk_join_enz

EC number: NA

Molecular weight: Translated: 28212; Mature: 28212

Theoretical pI: Translated: 9.91; Mature: 9.91

Prosite motif: NA

Important sites: ACT_SITE 236-236

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
0.8 %Met     (Translated Protein)
1.3 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
1.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKLPNEIDEYLASRNFSENTRSNYHYDLVSLQAFFEDKSLTTENLELYKIQISNLSPAAQ
CCCCHHHHHHHHHCCCCCCCCCCCEEHHHHHHHHHCCCCCCCCCEEEEEEEECCCCHHHH
RRKISSANQYLLFLYQRQKVDQYFKIKQVVQKKSQTAQSYHPMIKEFPEFYGPLTCPGQF
HHHHHCCCHHEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHH
LALLILEFGLNFAEIQKLKWENFNWNFKYLTIEKAGIKRVLPIREKFAIRVKAINNADEL
HHHHHHHHCCCHHHHHHHHCCCCCCEEEEEEEECCCCHHHCCHHHHHEEEEEECCCHHHH
FAKSRQFLYTELKKFTNYSSKEIREQYILHQVKAGKSIYELATLLGLTTITTLEKYYR
HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MKLPNEIDEYLASRNFSENTRSNYHYDLVSLQAFFEDKSLTTENLELYKIQISNLSPAAQ
CCCCHHHHHHHHHCCCCCCCCCCCEEHHHHHHHHHCCCCCCCCCEEEEEEEECCCCHHHH
RRKISSANQYLLFLYQRQKVDQYFKIKQVVQKKSQTAQSYHPMIKEFPEFYGPLTCPGQF
HHHHHCCCHHEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHH
LALLILEFGLNFAEIQKLKWENFNWNFKYLTIEKAGIKRVLPIREKFAIRVKAINNADEL
HHHHHHHHCCCHHHHHHHHCCCCCCEEEEEEEECCCCHHHCCHHHHHEEEEEECCCHHHH
FAKSRQFLYTELKKFTNYSSKEIREQYILHQVKAGKSIYELATLLGLTTITTLEKYYR
HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11337471