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The map label for this gene is scpB

Identifier: 30024034

GI number: 30024034

Start: 1308685

End: 1309251

Strand: Reverse

Name: scpB

Synonym: L108430

Alternate gene names: 30024034

Gene position: 1309251-1308685 (Counterclockwise)

Preceding gene: 15673259

Following gene: 30024033

Centisome position: 55.35

GC content: 34.74

Gene sequence:

>567_bases
GTGAATAAGACAGCAAGTTGTGAACTCTTACTTTTTGTATCTGGCGAAGCTGGTTTAACTTTGGCAGAATTGTCAGCATT
GACAGAAATGTCTAAACAAGCTTGTCAGCAACAAATTGATTACTTAAAAGAAAAATATCATTCTGATGAAGAATCTGCTT
TAACGATTATTGAAACTGCAGGTAAATATCGTATGGCTACAAAAGAAGAGTTTGCAGAAATTCTTAAAAACTATGCCAAA
ACTCCTCTTAATCAATCTTTGTCAAAATCAGCTCTTGAAGTTTTATCAATTATTGCTTATAAGCAACCTTTAACTCGACT
CGAAATCGATCATCTCCGCGGAGTGAATTCCTCAGGTGTTCTCTCAACACTTCGTGCTTTTGATTTGGTTGAAAAGGTCG
GGCAAGTTGAAGCACCAGGACGTCCAAGTCTTTATGCAACAACTGATTTTTTCTTAGACTATATTGGGATTAATCATTTA
GATGAATTACCTGAAATAGATGAGTCAAGATTTATCGCAGAAGAACAAACCTTATTTAACGAAAGTGAAGAAAATGAGAA
TCAATAA

Upstream 100 bases:

>100_bases
ACCACTTTTATGGCTCTTTTAGAATTAATCAAAAATCAACAGATTTCTTTTTCTCAAGGAGAGCTTTTTGGAGAAATTAT
TTTAGAAAGAAAAGAAACTA

Downstream 100 bases:

>100_bases
ATATTTGGCCCATGCAGGTGTGGCAAGCAGACGTAAAGCAGAAGAACTAATTTTAGCGGGAAAAGTAACGGTAAATAATG
TTCCAATGACAAACTTGGGT

Product: segregation and condensation protein B

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 188; Mature: 188

Protein sequence:

>188_residues
MNKTASCELLLFVSGEAGLTLAELSALTEMSKQACQQQIDYLKEKYHSDEESALTIIETAGKYRMATKEEFAEILKNYAK
TPLNQSLSKSALEVLSIIAYKQPLTRLEIDHLRGVNSSGVLSTLRAFDLVEKVGQVEAPGRPSLYATTDFFLDYIGINHL
DELPEIDESRFIAEEQTLFNESEENENQ

Sequences:

>Translated_188_residues
MNKTASCELLLFVSGEAGLTLAELSALTEMSKQACQQQIDYLKEKYHSDEESALTIIETAGKYRMATKEEFAEILKNYAK
TPLNQSLSKSALEVLSIIAYKQPLTRLEIDHLRGVNSSGVLSTLRAFDLVEKVGQVEAPGRPSLYATTDFFLDYIGINHL
DELPEIDESRFIAEEQTLFNESEENENQ
>Mature_188_residues
MNKTASCELLLFVSGEAGLTLAELSALTEMSKQACQQQIDYLKEKYHSDEESALTIIETAGKYRMATKEEFAEILKNYAK
TPLNQSLSKSALEVLSIIAYKQPLTRLEIDHLRGVNSSGVLSTLRAFDLVEKVGQVEAPGRPSLYATTDFFLDYIGINHL
DELPEIDESRFIAEEQTLFNESEENENQ

Specific function: Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing smc and scpA that pull DNA away from mid-cell into both cell halves

COG id: COG1386

COG function: function code K; Predicted transcriptional regulator containing the HTH domain

Gene ontology:

Cell location: Cytoplasm. Note=Associated with two foci at the outer edges of the nucleoid region in young cells, and at four foci within both cell halves in older cells (By similarity)

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the scpB family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): SCPB_LACLA (Q9CG34)

Other databases:

- EMBL:   AE005176
- PIR:   D86784
- RefSeq:   NP_267432.2
- ProteinModelPortal:   Q9CG34
- SMR:   Q9CG34
- GeneID:   1114925
- GenomeReviews:   AE005176_GR
- KEGG:   lla:L108430
- NMPDR:   fig|272623.1.peg.1311
- HOGENOM:   HBG752450
- OMA:   TYKLTTS
- ProtClustDB:   PRK00135
- BioCyc:   LLAC272623:L108430-MONOMER
- GO:   GO:0005737
- HAMAP:   MF_01804
- InterPro:   IPR005234
- InterPro:   IPR011991
- Gene3D:   G3DSA:1.10.10.10
- PIRSF:   PIRSF019345
- TIGRFAMs:   TIGR00281

Pfam domain/function: PF04079 DUF387

EC number: NA

Molecular weight: Translated: 21088; Mature: 21088

Theoretical pI: Translated: 4.28; Mature: 4.28

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNKTASCELLLFVSGEAGLTLAELSALTEMSKQACQQQIDYLKEKYHSDEESALTIIETA
CCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHC
GKYRMATKEEFAEILKNYAKTPLNQSLSKSALEVLSIIAYKQPLTRLEIDHLRGVNSSGV
CCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCCHH
LSTLRAFDLVEKVGQVEAPGRPSLYATTDFFLDYIGINHLDELPEIDESRFIAEEQTLFN
HHHHHHHHHHHHHHCCCCCCCCCEEHHHHHHHHHHCHHHHHHCCCCCHHHHHHHHHHHHC
ESEENENQ
CCCCCCCC
>Mature Secondary Structure
MNKTASCELLLFVSGEAGLTLAELSALTEMSKQACQQQIDYLKEKYHSDEESALTIIETA
CCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHC
GKYRMATKEEFAEILKNYAKTPLNQSLSKSALEVLSIIAYKQPLTRLEIDHLRGVNSSGV
CCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCCHH
LSTLRAFDLVEKVGQVEAPGRPSLYATTDFFLDYIGINHLDELPEIDESRFIAEEQTLFN
HHHHHHHHHHHHHHCCCCCCCCCEEHHHHHHHHHHCHHHHHHCCCCCHHHHHHHHHHHHC
ESEENENQ
CCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11337471