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The map label for this gene is ycgD

Identifier: 30023985

GI number: 30023985

Start: 263676

End: 264695

Strand: Reverse

Name: ycgD

Synonym: L63684

Alternate gene names: 30023985

Gene position: 264695-263676 (Counterclockwise)

Preceding gene: 15672248

Following gene: 15672240

Centisome position: 11.19

GC content: 37.35

Gene sequence:

>1020_bases
ATGATAAAAAAGCTTAATATTGCCTATGTTGGTTTTGGTAAATCAACAAATCGCTATCATATTCCTTACGTGAAAGAACG
TGAGAATATTGTGATTAAACGAATTGTCAACCGGACTTTAGGAAAACGTCCTGAACAAGCAGAATTAGAAGCAAATGGAA
CTTTGTTCTCCACTGACATCGCTGATATTATTAATGATGATTCAATTGATTTAGTAGTCATTGTGACTCCAGCTTTTGCT
CACTATGACTATGCTAAGGAACTCCTTTCAGCTGGAAAAAATGTACTCTGTGATAAACCATTAGTCGAAACCTTGGAACA
AGCTAAAGAATTGGTAGCTCTTGCCAAAGAAAAAAATCTTTTCTTCATGCCTTTCCAAAATCGACGCTTTGACAGCGACT
TTTTAACCGTCAAAAAAGTGATTGAGCAAGGTTATTTGGGTGATTTGGTAGATATCACTGTCAATATGGACCACTTTAGA
CCTAATGATGCCAGTCAAGGTGGAAATTTTGATGGCGCTTGGTATGGTCACGGTGTTCATTTAGTGGACCAAATGGTTTC
ACTTTTTGGCGCTCCCAAAGAAGTTCAATATGATATTCGAGCAACAAGAGATTATGACAGTGTCGATGACTATTTTTCTG
TCAATCTTCTTTATCCAAACTTGCGAGCAACTGTTGCTGCTACTGAAGTCGCTGCTCTACCACATCCAAAATGGCTTGTT
TATGGTACGAGAGGAACTTTCATCAAAATGGATGTTGACCAACAAGAAAATGATTTAAAAGTTGGCATGTTCCCAGGTGA
TGAAGGTTTTGGGCAAGACAGTCCAGCTGATTTTGGGCAACTTACCTATTTCAATCAAAATGGTGACCGCATTGTGAAGC
ATATTCCAACGGTTGCTGGTGATTATGGTAGAGTTTATGATTCAGCTTATGAATCAATTATTAATGGAGCTGACAAATTG
GTTTCAGATGAACAAATTTTGGCTGTCATTAAAACTTTGGAAAATGGTTTTTCTAAATAA

Upstream 100 bases:

>100_bases
CACGAAAAAAACTCAACGGTAGGCGGAAAAGGCATTAATACAAAGAATGCCACTCAAGCTAAAATTGAAGCCCTCCGTGC
CAAAATGGAGAATAAAAAGA

Downstream 100 bases:

>100_bases
TAATAAAAAGACTTATCAACTGATAAGTCTTTTTTTACTGACAGCCTATTTTTTCTTATTGGCTTTTTGTAATTTACTGA
CCAAACCTTTGAATTGACCT

Product: oxidoreductase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 339; Mature: 339

Protein sequence:

>339_residues
MIKKLNIAYVGFGKSTNRYHIPYVKERENIVIKRIVNRTLGKRPEQAELEANGTLFSTDIADIINDDSIDLVVIVTPAFA
HYDYAKELLSAGKNVLCDKPLVETLEQAKELVALAKEKNLFFMPFQNRRFDSDFLTVKKVIEQGYLGDLVDITVNMDHFR
PNDASQGGNFDGAWYGHGVHLVDQMVSLFGAPKEVQYDIRATRDYDSVDDYFSVNLLYPNLRATVAATEVAALPHPKWLV
YGTRGTFIKMDVDQQENDLKVGMFPGDEGFGQDSPADFGQLTYFNQNGDRIVKHIPTVAGDYGRVYDSAYESIINGADKL
VSDEQILAVIKTLENGFSK

Sequences:

>Translated_339_residues
MIKKLNIAYVGFGKSTNRYHIPYVKERENIVIKRIVNRTLGKRPEQAELEANGTLFSTDIADIINDDSIDLVVIVTPAFA
HYDYAKELLSAGKNVLCDKPLVETLEQAKELVALAKEKNLFFMPFQNRRFDSDFLTVKKVIEQGYLGDLVDITVNMDHFR
PNDASQGGNFDGAWYGHGVHLVDQMVSLFGAPKEVQYDIRATRDYDSVDDYFSVNLLYPNLRATVAATEVAALPHPKWLV
YGTRGTFIKMDVDQQENDLKVGMFPGDEGFGQDSPADFGQLTYFNQNGDRIVKHIPTVAGDYGRVYDSAYESIINGADKL
VSDEQILAVIKTLENGFSK
>Mature_339_residues
MIKKLNIAYVGFGKSTNRYHIPYVKERENIVIKRIVNRTLGKRPEQAELEANGTLFSTDIADIINDDSIDLVVIVTPAFA
HYDYAKELLSAGKNVLCDKPLVETLEQAKELVALAKEKNLFFMPFQNRRFDSDFLTVKKVIEQGYLGDLVDITVNMDHFR
PNDASQGGNFDGAWYGHGVHLVDQMVSLFGAPKEVQYDIRATRDYDSVDDYFSVNLLYPNLRATVAATEVAALPHPKWLV
YGTRGTFIKMDVDQQENDLKVGMFPGDEGFGQDSPADFGQLTYFNQNGDRIVKHIPTVAGDYGRVYDSAYESIINGADKL
VSDEQILAVIKTLENGFSK

Specific function: Unknown

COG id: COG0673

COG function: function code R; Predicted dehydrogenases and related proteins

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the gfo/idh/mocA family. Biliverdin reductase subfamily [H]

Homologues:

Organism=Homo sapiens, GI7657212, Length=164, Percent_Identity=31.0975609756098, Blast_Score=70, Evalue=3e-12,
Organism=Escherichia coli, GI1789848, Length=336, Percent_Identity=44.3452380952381, Blast_Score=293, Evalue=8e-81,
Organism=Escherichia coli, GI87081947, Length=343, Percent_Identity=31.4868804664723, Blast_Score=167, Evalue=9e-43,
Organism=Escherichia coli, GI1787574, Length=196, Percent_Identity=23.9795918367347, Blast_Score=63, Evalue=4e-11,
Organism=Drosophila melanogaster, GI24581117, Length=166, Percent_Identity=30.7228915662651, Blast_Score=68, Evalue=1e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR016040
- InterPro:   IPR000683
- InterPro:   IPR004104 [H]

Pfam domain/function: PF01408 GFO_IDH_MocA; PF02894 GFO_IDH_MocA_C [H]

EC number: 1.-.-.- [C]

Molecular weight: Translated: 38054; Mature: 38054

Theoretical pI: Translated: 4.83; Mature: 4.83

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIKKLNIAYVGFGKSTNRYHIPYVKERENIVIKRIVNRTLGKRPEQAELEANGTLFSTDI
CCEEEEEEEEEECCCCCEEECCEECCCCHHHHHHHHHHHHCCCCCCCEEECCCCEEECCH
ADIINDDSIDLVVIVTPAFAHYDYAKELLSAGKNVLCDKPLVETLEQAKELVALAKEKNL
HHHHCCCCCEEEEEECCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCE
FFMPFQNRRFDSDFLTVKKVIEQGYLGDLVDITVNMDHFRPNDASQGGNFDGAWYGHGVH
EEEECCCCCCCHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCCCCCCCCCEEECCHHH
LVDQMVSLFGAPKEVQYDIRATRDYDSVDDYFSVNLLYPNLRATVAATEVAALPHPKWLV
HHHHHHHHHCCCHHEEEEEEECCCCCCCCCEEEEEEECCCCHHHHHHHHHHCCCCCCEEE
YGTRGTFIKMDVDQQENDLKVGMFPGDEGFGQDSPADFGQLTYFNQNGDRIVKHIPTVAG
EECCCCEEEEECCCCCCCEEEEECCCCCCCCCCCCCCCCEEEEECCCCCHHHHHCCCCCC
DYGRVYDSAYESIINGADKLVSDEQILAVIKTLENGFSK
CHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MIKKLNIAYVGFGKSTNRYHIPYVKERENIVIKRIVNRTLGKRPEQAELEANGTLFSTDI
CCEEEEEEEEEECCCCCEEECCEECCCCHHHHHHHHHHHHCCCCCCCEEECCCCEEECCH
ADIINDDSIDLVVIVTPAFAHYDYAKELLSAGKNVLCDKPLVETLEQAKELVALAKEKNL
HHHHCCCCCEEEEEECCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCE
FFMPFQNRRFDSDFLTVKKVIEQGYLGDLVDITVNMDHFRPNDASQGGNFDGAWYGHGVH
EEEECCCCCCCHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCCCCCCCCCEEECCHHH
LVDQMVSLFGAPKEVQYDIRATRDYDSVDDYFSVNLLYPNLRATVAATEVAALPHPKWLV
HHHHHHHHHCCCHHEEEEEEECCCCCCCCCEEEEEEECCCCHHHHHHHHHHCCCCCCEEE
YGTRGTFIKMDVDQQENDLKVGMFPGDEGFGQDSPADFGQLTYFNQNGDRIVKHIPTVAG
EECCCCEEEEECCCCCCCEEEEECCCCCCCCCCCCCCCCEEEEECCCCCHHHHHCCCCCC
DYGRVYDSAYESIINGADKLVSDEQILAVIKTLENGFSK
CHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503; 10493123 [H]