| Definition | Bacteroides thetaiotaomicron VPI-5482 chromosome, complete genome. |
|---|---|
| Accession | NC_004663 |
| Length | 6,260,361 |
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The map label for this gene is 29349683
Identifier: 29349683
GI number: 29349683
Start: 5634664
End: 5635422
Strand: Reverse
Name: 29349683
Synonym: BT_4275
Alternate gene names: NA
Gene position: 5635422-5634664 (Counterclockwise)
Preceding gene: 29349687
Following gene: 29349682
Centisome position: 90.02
GC content: 30.17
Gene sequence:
>759_bases TTGTCAGCATTATTACTTTTGAATATATCAAAGGTATGCTCTCAAGAAGATAAAAAAACTAAAGATTTTTTCAATTCTGG TGGATATATATCTGAAGGATATGCATTGGATAGAAACCAAGTACGATTTAATCAGTCCAGCGATTTTGTGTTTCATCATA TTCCTAACGGTAATCTAATATGCATTACTTCAAAACAATTTAGAGCACATGCATTTAGTCGACATTATAATTGCATACTA TCAAAAGACAGTAATTTTATTGCATACGTATCTGTGCCTCCCATATTCTGCGGGGATAAAGATTCTATTTATGCTGACTT TAGTTTTAAAACAGGATTTATGATTGAAATGAATACTTATCATTTAGAAATAATCAAAGGAGATTTTTTTAGGAATACAG GAGAAAGGGTTACTTCTTTGTGTGATCTTCCTCTCATTTATAAATCTTCAAAATATGCTCGTAAAGCATTTAATGCGGAT ACTGTAATTACATATCCTTTAAGAATGTGGGAAAATTTAGAAAATAAGTACAATCATTGCCAAGTAATGATAATTCAAAA AAAACGTCGTGGATGTATTGCTCTGTATTGCTTTTATAATGACAAAGGTGCCAAAAAGCTAAGTCACTATATCAGATCAT TAGAACATGTCTTTTGGTATAGAGAACCGAAAGATTACATTGAAGTAATAGATCCACCAATCATAGATGAATATGAAATA CCTCATTTAAAAGCTAAAGAAAGATCCGCTAATAATTAA
Upstream 100 bases:
>100_bases TCTTTACTCATTTTTTGCATAGTCTTTTTTCTGGCAAAGATCGAGACTTAAAGATACAAAGACAACGGGTACTTTATCGG GGGCTTACCAAGCAATAACC
Downstream 100 bases:
>100_bases GATGCAAAAATAAGATGGGAATTTATCCTATTACTTCTATCTTTACAGAATCACACAACTAAAATTTATCAGAATGATTA TAATGGCTACAATTATTAAA
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 252; Mature: 251
Protein sequence:
>252_residues MSALLLLNISKVCSQEDKKTKDFFNSGGYISEGYALDRNQVRFNQSSDFVFHHIPNGNLICITSKQFRAHAFSRHYNCIL SKDSNFIAYVSVPPIFCGDKDSIYADFSFKTGFMIEMNTYHLEIIKGDFFRNTGERVTSLCDLPLIYKSSKYARKAFNAD TVITYPLRMWENLENKYNHCQVMIIQKKRRGCIALYCFYNDKGAKKLSHYIRSLEHVFWYREPKDYIEVIDPPIIDEYEI PHLKAKERSANN
Sequences:
>Translated_252_residues MSALLLLNISKVCSQEDKKTKDFFNSGGYISEGYALDRNQVRFNQSSDFVFHHIPNGNLICITSKQFRAHAFSRHYNCIL SKDSNFIAYVSVPPIFCGDKDSIYADFSFKTGFMIEMNTYHLEIIKGDFFRNTGERVTSLCDLPLIYKSSKYARKAFNAD TVITYPLRMWENLENKYNHCQVMIIQKKRRGCIALYCFYNDKGAKKLSHYIRSLEHVFWYREPKDYIEVIDPPIIDEYEI PHLKAKERSANN >Mature_251_residues SALLLLNISKVCSQEDKKTKDFFNSGGYISEGYALDRNQVRFNQSSDFVFHHIPNGNLICITSKQFRAHAFSRHYNCILS KDSNFIAYVSVPPIFCGDKDSIYADFSFKTGFMIEMNTYHLEIIKGDFFRNTGERVTSLCDLPLIYKSSKYARKAFNADT VITYPLRMWENLENKYNHCQVMIIQKKRRGCIALYCFYNDKGAKKLSHYIRSLEHVFWYREPKDYIEVIDPPIIDEYEIP HLKAKERSANN
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 29491; Mature: 29360
Theoretical pI: Translated: 8.67; Mature: 8.67
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
3.2 %Cys (Translated Protein) 2.0 %Met (Translated Protein) 5.2 %Cys+Met (Translated Protein) 3.2 %Cys (Mature Protein) 1.6 %Met (Mature Protein) 4.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSALLLLNISKVCSQEDKKTKDFFNSGGYISEGYALDRNQVRFNQSSDFVFHHIPNGNLI CCEEEEEEHHHHHCCCCHHHHHHHCCCCEEECCEEECCCEEEECCCCCEEEEECCCCCEE CITSKQFRAHAFSRHYNCILSKDSNFIAYVSVPPIFCGDKDSIYADFSFKTGFMIEMNTY EEECCHHHHHHHHCCEEEEEECCCCEEEEEECCCEEECCCCCEEEEEEECCEEEEEECCE HLEIIKGDFFRNTGERVTSLCDLPLIYKSSKYARKAFNADTVITYPLRMWENLENKYNHC EEEEEECCHHCCHHHHHHHHHCCCEEECCCHHHHHHCCCCEEEEEHHHHHHHHHCCCCCE QVMIIQKKRRGCIALYCFYNDKGAKKLSHYIRSLEHVFWYREPKDYIEVIDPPIIDEYEI EEEEEEECCCCEEEEEEEECCCCHHHHHHHHHHHHHHEEECCCHHHHHHCCCCCCCCCCC PHLKAKERSANN CCCCCCCCCCCC >Mature Secondary Structure SALLLLNISKVCSQEDKKTKDFFNSGGYISEGYALDRNQVRFNQSSDFVFHHIPNGNLI CEEEEEEHHHHHCCCCHHHHHHHCCCCEEECCEEECCCEEEECCCCCEEEEECCCCCEE CITSKQFRAHAFSRHYNCILSKDSNFIAYVSVPPIFCGDKDSIYADFSFKTGFMIEMNTY EEECCHHHHHHHHCCEEEEEECCCCEEEEEECCCEEECCCCCEEEEEEECCEEEEEECCE HLEIIKGDFFRNTGERVTSLCDLPLIYKSSKYARKAFNADTVITYPLRMWENLENKYNHC EEEEEECCHHCCHHHHHHHHHCCCEEECCCHHHHHHCCCCEEEEEHHHHHHHHHCCCCCE QVMIIQKKRRGCIALYCFYNDKGAKKLSHYIRSLEHVFWYREPKDYIEVIDPPIIDEYEI EEEEEEECCCCEEEEEEEECCCCHHHHHHHHHHHHHHEEECCCHHHHHHCCCCCCCCCCC PHLKAKERSANN CCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA