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The map label for this gene is ylbH [H]

Identifier: 29349387

GI number: 29349387

Start: 5181909

End: 5182442

Strand: Reverse

Name: ylbH [H]

Synonym: BT_3979

Alternate gene names: 29349387

Gene position: 5182442-5181909 (Counterclockwise)

Preceding gene: 29349388

Following gene: 29349383

Centisome position: 82.78

GC content: 40.26

Gene sequence:

>534_bases
ATGCGAGTAATCAGCGGTATTTATAAACGAAGAAGATTTGATGTACCACGTACATTCAAAGCACGCCCTACAACAGACTT
CGCCAAGGAGAATCTGTTCAATGTACTTAATAATTATATTGATTTCGAAGAAGGAGTAACTGCACTTGACTTGTTTGCAG
GCACGGGCAGTATCAGTATCGAACTGGTATCCCGAGGCTGCGACCGTGTGATCAGTGTGGAAAAAGATCCGGCTCATCAC
TCGTTTATCTGCAAAATAATGAAAGAAGTACAAACTGACAAATGTCTGCCTATCCGTGGCGATGTATTTAAGTTTATCAA
CAGCGGACGAGAGCAGTTTGATTTTATCTTTGCCGACCCTCCTTACGCTTTAAAGGAGCTGGAATCGATACCGGAACTAA
TATTCAAAAATAATCTGCTCAAAGAAGGAGGTTTGTTTGTATTGGAGCATGGTAAGCAAAATAACTTTGAAGATCATCCG
CATTTCATAGAAAGAAGAGTCTATGGAAGTGTGAATTTCTCGCTTTTCAGATAA

Upstream 100 bases:

>100_bases
TGTCGGACAAAGAGACATTGATGAACGAACTGAAAAAATTCATTCTGCAGGTATTCATTATGAATCCTGCCAACAATATT
GACATGCAAGCCTTATTAAC

Downstream 100 bases:

>100_bases
GATAAAAGTATATCAGATAAAGGAAGCATCCTTTTTAAAGCAGCGGAGCCAACAAACGAACGACAGACTCTGCTGCCCTC
CTCCTCCACGAACGTTTCAC

Product: putative methyltransferase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 177; Mature: 177

Protein sequence:

>177_residues
MRVISGIYKRRRFDVPRTFKARPTTDFAKENLFNVLNNYIDFEEGVTALDLFAGTGSISIELVSRGCDRVISVEKDPAHH
SFICKIMKEVQTDKCLPIRGDVFKFINSGREQFDFIFADPPYALKELESIPELIFKNNLLKEGGLFVLEHGKQNNFEDHP
HFIERRVYGSVNFSLFR

Sequences:

>Translated_177_residues
MRVISGIYKRRRFDVPRTFKARPTTDFAKENLFNVLNNYIDFEEGVTALDLFAGTGSISIELVSRGCDRVISVEKDPAHH
SFICKIMKEVQTDKCLPIRGDVFKFINSGREQFDFIFADPPYALKELESIPELIFKNNLLKEGGLFVLEHGKQNNFEDHP
HFIERRVYGSVNFSLFR
>Mature_177_residues
MRVISGIYKRRRFDVPRTFKARPTTDFAKENLFNVLNNYIDFEEGVTALDLFAGTGSISIELVSRGCDRVISVEKDPAHH
SFICKIMKEVQTDKCLPIRGDVFKFINSGREQFDFIFADPPYALKELESIPELIFKNNLLKEGGLFVLEHGKQNNFEDHP
HFIERRVYGSVNFSLFR

Specific function: May catalyze the S-adenosyl-L-methionine-dependent methylation of a specific base in rRNA (Potential) [H]

COG id: COG0742

COG function: function code L; N6-adenine-specific methylase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the methyltransferase superfamily. RsmD family [H]

Homologues:

Organism=Escherichia coli, GI1789875, Length=180, Percent_Identity=26.6666666666667, Blast_Score=75, Evalue=3e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004398 [H]

Pfam domain/function: PF03602 Cons_hypoth95 [H]

EC number: 2.1.1.- [C]

Molecular weight: Translated: 20483; Mature: 20483

Theoretical pI: Translated: 7.56; Mature: 7.56

Prosite motif: PS00092 N6_MTASE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRVISGIYKRRRFDVPRTFKARPTTDFAKENLFNVLNNYIDFEEGVTALDLFAGTGSISI
CCHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHCHHHCCCEEEHEECCCCEEE
ELVSRGCDRVISVEKDPAHHSFICKIMKEVQTDKCLPIRGDVFKFINSGREQFDFIFADP
HHHHCCCHHEEECCCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHCCHHHEEEEECCC
PYALKELESIPELIFKNNLLKEGGLFVLEHGKQNNFEDHPHFIERRVYGSVNFSLFR
CHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCHHHHHHHHHCCCCEEEEC
>Mature Secondary Structure
MRVISGIYKRRRFDVPRTFKARPTTDFAKENLFNVLNNYIDFEEGVTALDLFAGTGSISI
CCHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHCHHHCCCEEEHEECCCCEEE
ELVSRGCDRVISVEKDPAHHSFICKIMKEVQTDKCLPIRGDVFKFINSGREQFDFIFADP
HHHHCCCHHEEECCCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHCCHHHEEEEECCC
PYALKELESIPELIFKNNLLKEGGLFVLEHGKQNNFEDHPHFIERRVYGSVNFSLFR
CHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCHHHHHHHHHCCCCEEEEC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Methyltransferases Protein + DNA = Protein-DNA [C]

General reaction: Transferring one-carbon groups [C]

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]