Click here to switch to the map view.

The map label for this gene is 29349345

Identifier: 29349345

GI number: 29349345

Start: 5111535

End: 5112497

Strand: Reverse

Name: 29349345

Synonym: BT_3937

Alternate gene names: NA

Gene position: 5112497-5111535 (Counterclockwise)

Preceding gene: 29349346

Following gene: 29349344

Centisome position: 81.66

GC content: 48.39

Gene sequence:

>963_bases
ATGCCGAACTTTTTTAAGTCTTTTTTCTCCGGTAAGTCCGAAACTCCGGAGAGTGAAAAACAGAAAAACGATCAGAAAAA
CTTCGAGATATTCAAATATGACGGTTTGCGTGCACAACGCATGGGACGTCCGGATTATGCCATAAAGTGCTTTACCGAGG
CGCTTGCCATCGAAGAGGATTTCGAAACGATGGGCTATCTCAGCCAACTTTACATCCCGATGGGAGAAACCGAAAAAGCC
CGCGAACTTCTGGAGAAAATGGCAGTAATGGAACCTCATGTGACCAGCACATTCCTCACACTGGCCAATGTCTGCTACAT
CCAAGAAGATTACAAAGCAATGGAAGAGGCTGCCGGCAAAGCAATCGCCATCGAAGAGGGAAATGCAGTCGCACACTTTC
TCCTCGGAAAAGCCCGCAAAGGACAGGATGACGAAATCATGACCATCGCTCATCTGACGAAAGCCATCACTCTGAAAGAC
GACTTCATCGAAGCCCGTCTGATGCGTGCGGAAGCTCTGCTGAAAATGAAGCAATACAAGGAAACAATGGAAGACATAGA
CGCCGTACTCGCCCAGAATCCGGAAGAAGAGACCGCCATCCTGCTGCGTGGCAAGGTGAAAGAAGCCAACGGACAGGAAG
AAGAAGCGGAAACGGACTACAAGTTCGTAACGGAAATAAACCCATTCAACGAACAAGCCTATCTCTATCTAGGACAGCTT
TATATCAATCAGAAGAAACTGGCGGAAGCAATCGCCCTGTTTGACGAAGCCATCGAGTTGAACCCGAACTTCGCCGAAGC
CTATAAAGAACGCGGACGCGCCAAACTACTGAACGGTGATAAAGACGGTTCCGTAGAAGACATGAAGAAGTCACTGGAGC
TGAATCCAAAAGACGAAGCTAGTCTGAACGGAGAATTCAAGAACCTGGGACCGAAACCGGAAGCACTCCCGGGAATCTTC
TAG

Upstream 100 bases:

>100_bases
ATATTTATTGGACGAAGGCGAGCTGAAGATGCAGGACGGAATGCTACATATTTCAAAATAAGTTATTACATTTGCAGATA
AACTCTAAAACAACACTATC

Downstream 100 bases:

>100_bases
GCAGACGGCGGTATATACTCATTTTTAACTGAAACATTACTGTCATATCAGGTGACCTTTTCATCTTTTTTAGAGAAGAA
AACAAAAAAAGTATCGCTTT

Product: TPR domain-containing protein

Products: NA

Alternate protein names: TPR Domain-Containing Protein; Tetratricopeptide Repeat Domain Protein; Tetratricopeptide TPR_2 Repeat Protein; TPR Repeat-Containing Serine/Threonin Protein Kinase; Peptidase; TPR-Domain Containing Protein; TPR Domain Protein; Tetratricopeptide Tpr_1 Repeat-Containing Protein; Tetratricopeptide Repeat Family; TPR Domain Containing Protein; Pentapeptide Repeat-Containing Serine/Threonine Kinase; TPR-Domain-Containing Protein; Zn-Dependent Protease; Tetratricopeptide Repeat Family Protein; Tfp Pilus Assembly Protein PilF; TPR Repeat-Containing Protein Kinase; Tetratricopeptide TPR_1 Repeat-Containing Protein; Peptidase S1 And S6 Chymotrypsin/Hap; O-Linked GlcNAc Transferase; Tetratricopeptide Repeat-Containing Protein; Tetratricopeptide Repeat Protein

Number of amino acids: Translated: 320; Mature: 319

Protein sequence:

>320_residues
MPNFFKSFFSGKSETPESEKQKNDQKNFEIFKYDGLRAQRMGRPDYAIKCFTEALAIEEDFETMGYLSQLYIPMGETEKA
RELLEKMAVMEPHVTSTFLTLANVCYIQEDYKAMEEAAGKAIAIEEGNAVAHFLLGKARKGQDDEIMTIAHLTKAITLKD
DFIEARLMRAEALLKMKQYKETMEDIDAVLAQNPEEETAILLRGKVKEANGQEEEAETDYKFVTEINPFNEQAYLYLGQL
YINQKKLAEAIALFDEAIELNPNFAEAYKERGRAKLLNGDKDGSVEDMKKSLELNPKDEASLNGEFKNLGPKPEALPGIF

Sequences:

>Translated_320_residues
MPNFFKSFFSGKSETPESEKQKNDQKNFEIFKYDGLRAQRMGRPDYAIKCFTEALAIEEDFETMGYLSQLYIPMGETEKA
RELLEKMAVMEPHVTSTFLTLANVCYIQEDYKAMEEAAGKAIAIEEGNAVAHFLLGKARKGQDDEIMTIAHLTKAITLKD
DFIEARLMRAEALLKMKQYKETMEDIDAVLAQNPEEETAILLRGKVKEANGQEEEAETDYKFVTEINPFNEQAYLYLGQL
YINQKKLAEAIALFDEAIELNPNFAEAYKERGRAKLLNGDKDGSVEDMKKSLELNPKDEASLNGEFKNLGPKPEALPGIF
>Mature_319_residues
PNFFKSFFSGKSETPESEKQKNDQKNFEIFKYDGLRAQRMGRPDYAIKCFTEALAIEEDFETMGYLSQLYIPMGETEKAR
ELLEKMAVMEPHVTSTFLTLANVCYIQEDYKAMEEAAGKAIAIEEGNAVAHFLLGKARKGQDDEIMTIAHLTKAITLKDD
FIEARLMRAEALLKMKQYKETMEDIDAVLAQNPEEETAILLRGKVKEANGQEEEAETDYKFVTEINPFNEQAYLYLGQLY
INQKKLAEAIALFDEAIELNPNFAEAYKERGRAKLLNGDKDGSVEDMKKSLELNPKDEASLNGEFKNLGPKPEALPGIF

Specific function: Unknown

COG id: COG0457

COG function: function code R; FOG: TPR repeat

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Homo sapiens, GI32307150, Length=280, Percent_Identity=24.6428571428571, Blast_Score=75, Evalue=5e-14,
Organism=Homo sapiens, GI32307148, Length=280, Percent_Identity=24.6428571428571, Blast_Score=75, Evalue=7e-14,
Organism=Caenorhabditis elegans, GI115532690, Length=257, Percent_Identity=25.2918287937743, Blast_Score=66, Evalue=2e-11,
Organism=Caenorhabditis elegans, GI115532692, Length=257, Percent_Identity=25.2918287937743, Blast_Score=66, Evalue=3e-11,
Organism=Saccharomyces cerevisiae, GI6319387, Length=239, Percent_Identity=23.0125523012552, Blast_Score=63, Evalue=5e-11,
Organism=Drosophila melanogaster, GI17647755, Length=280, Percent_Identity=25.3571428571429, Blast_Score=75, Evalue=9e-14,
Organism=Drosophila melanogaster, GI24585827, Length=280, Percent_Identity=25.3571428571429, Blast_Score=75, Evalue=9e-14,
Organism=Drosophila melanogaster, GI24585829, Length=280, Percent_Identity=25.3571428571429, Blast_Score=75, Evalue=9e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 36295; Mature: 36163

Theoretical pI: Translated: 4.49; Mature: 4.49

Prosite motif: PS50005 TPR L=RR ; PS50293 TPR_REGION

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPNFFKSFFSGKSETPESEKQKNDQKNFEIFKYDGLRAQRMGRPDYAIKCFTEALAIEED
CCHHHHHHHCCCCCCCCHHHHCCCCCCCEEEEECCCHHHHCCCCCHHHHHHHHHHHHHHH
FETMGYLSQLYIPMGETEKARELLEKMAVMEPHVTSTFLTLANVCYIQEDYKAMEEAAGK
HHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCC
AIAIEEGNAVAHFLLGKARKGQDDEIMTIAHLTKAITLKDDFIEARLMRAEALLKMKQYK
EEEEECCCHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ETMEDIDAVLAQNPEEETAILLRGKVKEANGQEEEAETDYKFVTEINPFNEQAYLYLGQL
HHHHHHHHHHHCCCCHHHEEEEECCCCCCCCCCHHHCCCCEEEEECCCCCCCHHEEHHHH
YINQKKLAEAIALFDEAIELNPNFAEAYKERGRAKLLNGDKDGSVEDMKKSLELNPKDEA
HHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCEEECCCCCCCCHHHHHHHCCCCCCCCC
SLNGEFKNLGPKPEALPGIF
CCCCCHHCCCCCCCCCCCCC
>Mature Secondary Structure 
PNFFKSFFSGKSETPESEKQKNDQKNFEIFKYDGLRAQRMGRPDYAIKCFTEALAIEED
CHHHHHHHCCCCCCCCHHHHCCCCCCCEEEEECCCHHHHCCCCCHHHHHHHHHHHHHHH
FETMGYLSQLYIPMGETEKARELLEKMAVMEPHVTSTFLTLANVCYIQEDYKAMEEAAGK
HHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCC
AIAIEEGNAVAHFLLGKARKGQDDEIMTIAHLTKAITLKDDFIEARLMRAEALLKMKQYK
EEEEECCCHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ETMEDIDAVLAQNPEEETAILLRGKVKEANGQEEEAETDYKFVTEINPFNEQAYLYLGQL
HHHHHHHHHHHCCCCHHHEEEEECCCCCCCCCCHHHCCCCEEEEECCCCCCCHHEEHHHH
YINQKKLAEAIALFDEAIELNPNFAEAYKERGRAKLLNGDKDGSVEDMKKSLELNPKDEA
HHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCEEECCCCCCCCHHHHHHHCCCCCCCCC
SLNGEFKNLGPKPEALPGIF
CCCCCHHCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA