Definition | Bacteroides thetaiotaomicron VPI-5482 chromosome, complete genome. |
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Accession | NC_004663 |
Length | 6,260,361 |
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The map label for this gene is 29346677
Identifier: 29346677
GI number: 29346677
Start: 1574015
End: 1575319
Strand: Reverse
Name: 29346677
Synonym: BT_1267
Alternate gene names: NA
Gene position: 1575319-1574015 (Counterclockwise)
Preceding gene: 29346678
Following gene: 29346676
Centisome position: 25.16
GC content: 44.67
Gene sequence:
>1305_bases ATGAAAATAAGGATATATAGCTTGTTGTTATGTGGTTTTGCTTTAGGGTCTTTGTCTGCTTTAGCCCAGCAAAGTCCTCT TCTTGAAAAGTACCGGACTATGGCATTGGATTACAATCACGACTTGAAAGCGGCTGAGAAGAATATAGCTGCCAGTATGG AAGTGGAAAAATCGGCACGGGCAGATTTGAAACCGAAACTTTCCGGAACAGCCAACTTTCAGTATACGGAGAATCCGTTG GAATTGACTCTGGATGTCCCTTCTTTAGGATTATCAAGAACAGTGGAAGGGAAACAACTGAACTATGGTGGTTCTCTTTC CATTCTGCAACCGGTCTATACAGGCGGACGAGTACTGGAATCCATCCGTATGGCACAACATCAGCAATCATTTGCTGCCA ATCAGGCAAAGGCATTGAATGATGCTGTTTGCTATCAAACGGATATTCAATACTGGAGTGCCGTAGCCCGGCAGGAGATT GTGACTGTTGCCGAAGATTTTCGTAACTCAATAGCCGCTTTGGTTAAAACAATTAAAGAAAGGGTAGAGGTGGGGCTGGT TGATCCGCAGGATTTACTGATGGCGGAAGTAAAACTGAACGAAGCGGAGTACCAGTTGCTCCAGGCACAAAGTAATTTTG AAACAGGGCGGATGGCATTGAATTCTATGATTGGTGTCCGGCTGGAACATCATACGGAACTGGATTCACAGATACCGGTG GTGGTTGTCGATGATTCTACATGGTTGTCTACCGGTATGGCACGTCCTGAAATTCAGATGGCTTATGACCGGATTCGTAT GGCCGAGAGTACGAAAAAGTTGAATGATTCGCAGTTCAAACCTCAGTTTTATGTGGGAATAGACGGGAGTTACTCTTCTC CCGGATATAATTTCAAGAAAGATCTGGATCCCAATTATGCTGTTTATGCAAAAGTCTCAGTACCTATTTTTGAGTGGGGG AAGCGTAAAAGTGAGAAGCGTGCTTCCTCCTTTCGGGTAGGTATGGCAGAGGATAATCTGAATAAAGTGATGGATCAGGT TGAACTGGAAATAGGAGTGGCACGTAAAGCGCTGTCACAAGCAATGGAACGGGTTCGTTTGAGCGAAAATTCACTGGCGA AGGCAGAAGAGAATGAAGCGAAAGCAATAGAACGTTATAATGAAGGAAAAGTGTCAGTGGTGGAAGTGATTGACGCGCAA ACCTATCGGCAGACATCGCAGGTGAATTATGTACAAGCCAAAGCTGCGGCACAAGGACACTATTCGGAGTTAATAAAAGC GCTCCACGGATATGATTGTCGATAA
Upstream 100 bases:
>100_bases CTGCGACTATTATTTTCGGACTGACGTTTGCCACGGGATTGACCTTGTTTGTCACGCCTGCATTATATTCAATGTTTTAT AAAGTAAAAGGAAAATAAAG
Downstream 100 bases:
>100_bases AAAGCACTAACTTTGTATGAAAAGAGCCAACTGTATGAATGTAAAGTTGAACACCTTATTGTATATAGCGCTGTTTTCAG GATTGGGTATATTCTCTTTC
Product: outer membrane protein
Products: NA
Alternate protein names: Outer Membrane Protein; Acriflavin Resistance Protein; Type I Secretion Outer Membrane Protein
Number of amino acids: Translated: 434; Mature: 434
Protein sequence:
>434_residues MKIRIYSLLLCGFALGSLSALAQQSPLLEKYRTMALDYNHDLKAAEKNIAASMEVEKSARADLKPKLSGTANFQYTENPL ELTLDVPSLGLSRTVEGKQLNYGGSLSILQPVYTGGRVLESIRMAQHQQSFAANQAKALNDAVCYQTDIQYWSAVARQEI VTVAEDFRNSIAALVKTIKERVEVGLVDPQDLLMAEVKLNEAEYQLLQAQSNFETGRMALNSMIGVRLEHHTELDSQIPV VVVDDSTWLSTGMARPEIQMAYDRIRMAESTKKLNDSQFKPQFYVGIDGSYSSPGYNFKKDLDPNYAVYAKVSVPIFEWG KRKSEKRASSFRVGMAEDNLNKVMDQVELEIGVARKALSQAMERVRLSENSLAKAEENEAKAIERYNEGKVSVVEVIDAQ TYRQTSQVNYVQAKAAAQGHYSELIKALHGYDCR
Sequences:
>Translated_434_residues MKIRIYSLLLCGFALGSLSALAQQSPLLEKYRTMALDYNHDLKAAEKNIAASMEVEKSARADLKPKLSGTANFQYTENPL ELTLDVPSLGLSRTVEGKQLNYGGSLSILQPVYTGGRVLESIRMAQHQQSFAANQAKALNDAVCYQTDIQYWSAVARQEI VTVAEDFRNSIAALVKTIKERVEVGLVDPQDLLMAEVKLNEAEYQLLQAQSNFETGRMALNSMIGVRLEHHTELDSQIPV VVVDDSTWLSTGMARPEIQMAYDRIRMAESTKKLNDSQFKPQFYVGIDGSYSSPGYNFKKDLDPNYAVYAKVSVPIFEWG KRKSEKRASSFRVGMAEDNLNKVMDQVELEIGVARKALSQAMERVRLSENSLAKAEENEAKAIERYNEGKVSVVEVIDAQ TYRQTSQVNYVQAKAAAQGHYSELIKALHGYDCR >Mature_434_residues MKIRIYSLLLCGFALGSLSALAQQSPLLEKYRTMALDYNHDLKAAEKNIAASMEVEKSARADLKPKLSGTANFQYTENPL ELTLDVPSLGLSRTVEGKQLNYGGSLSILQPVYTGGRVLESIRMAQHQQSFAANQAKALNDAVCYQTDIQYWSAVARQEI VTVAEDFRNSIAALVKTIKERVEVGLVDPQDLLMAEVKLNEAEYQLLQAQSNFETGRMALNSMIGVRLEHHTELDSQIPV VVVDDSTWLSTGMARPEIQMAYDRIRMAESTKKLNDSQFKPQFYVGIDGSYSSPGYNFKKDLDPNYAVYAKVSVPIFEWG KRKSEKRASSFRVGMAEDNLNKVMDQVELEIGVARKALSQAMERVRLSENSLAKAEENEAKAIERYNEGKVSVVEVIDAQ TYRQTSQVNYVQAKAAAQGHYSELIKALHGYDCR
Specific function: Unknown
COG id: COG1538
COG function: function code MU; Outer membrane protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 48509; Mature: 48509
Theoretical pI: Translated: 6.29; Mature: 6.29
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 3.0 %Met (Translated Protein) 3.7 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 3.0 %Met (Mature Protein) 3.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKIRIYSLLLCGFALGSLSALAQQSPLLEKYRTMALDYNHDLKAAEKNIAASMEVEKSAR CEEEHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHC ADLKPKLSGTANFQYTENPLELTLDVPSLGLSRTVEGKQLNYGGSLSILQPVYTGGRVLE CCCCCCCCCCCCEEEECCCEEEEEECCCCCCCCCCCCCEECCCCCCHHHHHHHCCHHHHH SIRMAQHQQSFAANQAKALNDAVCYQTDIQYWSAVARQEIVTVAEDFRNSIAALVKTIKE HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH RVEVGLVDPQDLLMAEVKLNEAEYQLLQAQSNFETGRMALNSMIGVRLEHHTELDSQIPV HHHCCCCCHHHHHHHHHHCCHHHHHHHHHHCCCCHHHHHHHHHHHEEECCCCCCCCCCCE VVVDDSTWLSTGMARPEIQMAYDRIRMAESTKKLNDSQFKPQFYVGIDGSYSSPGYNFKK EEECCCHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCCCCCC DLDPNYAVYAKVSVPIFEWGKRKSEKRASSFRVGMAEDNLNKVMDQVELEIGVARKALSQ CCCCCEEEEEEEECCHHHHCCCHHHHHHHHEEECCCHHHHHHHHHHHHHHHHHHHHHHHH AMERVRLSENSLAKAEENEAKAIERYNEGKVSVVEVIDAQTYRQTSQVNYVQAKAAAQGH HHHHHHCCCCHHHHCHHHHHHHHHHCCCCCEEEEEEHHHHHHHHHHHHHHHHHHHHHCCH YSELIKALHGYDCR HHHHHHHHCCCCCC >Mature Secondary Structure MKIRIYSLLLCGFALGSLSALAQQSPLLEKYRTMALDYNHDLKAAEKNIAASMEVEKSAR CEEEHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHC ADLKPKLSGTANFQYTENPLELTLDVPSLGLSRTVEGKQLNYGGSLSILQPVYTGGRVLE CCCCCCCCCCCCEEEECCCEEEEEECCCCCCCCCCCCCEECCCCCCHHHHHHHCCHHHHH SIRMAQHQQSFAANQAKALNDAVCYQTDIQYWSAVARQEIVTVAEDFRNSIAALVKTIKE HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH RVEVGLVDPQDLLMAEVKLNEAEYQLLQAQSNFETGRMALNSMIGVRLEHHTELDSQIPV HHHCCCCCHHHHHHHHHHCCHHHHHHHHHHCCCCHHHHHHHHHHHEEECCCCCCCCCCCE VVVDDSTWLSTGMARPEIQMAYDRIRMAESTKKLNDSQFKPQFYVGIDGSYSSPGYNFKK EEECCCHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCCCCCC DLDPNYAVYAKVSVPIFEWGKRKSEKRASSFRVGMAEDNLNKVMDQVELEIGVARKALSQ CCCCCEEEEEEEECCHHHHCCCHHHHHHHHEEECCCHHHHHHHHHHHHHHHHHHHHHHHH AMERVRLSENSLAKAEENEAKAIERYNEGKVSVVEVIDAQTYRQTSQVNYVQAKAAAQGH HHHHHHCCCCHHHHCHHHHHHHHHHCCCCCEEEEEEHHHHHHHHHHHHHHHHHHHHHCCH YSELIKALHGYDCR HHHHHHHHCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA