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The map label for this gene is ytfH [C]

Identifier: 29346672

GI number: 29346672

Start: 1567483

End: 1567830

Strand: Reverse

Name: ytfH [C]

Synonym: BT_1262

Alternate gene names: 29346672

Gene position: 1567830-1567483 (Counterclockwise)

Preceding gene: 29346675

Following gene: 29346668

Centisome position: 25.04

GC content: 42.53

Gene sequence:

>348_bases
ATGAAAAACTTTCACCCGACAGGGAATTGCCCTGTAAGAGATGTCATAAGCCGCTTGGGAGACAAATGGTCGATGCTGGT
ACTGATAACTTTGAATGCGAATGGTACGATGCGTTTTAGCGATATTCATAAAACGATAGAGGATATTTCACAGCGGATGC
TGACTGTTACTCTTCGTACGCTCGAATCTGACGGTTTGATTGAACGGAAAATATATGCGGAAGTACCTCCCCGTGTAGAG
TATTATCTGACAGATACAGGAGGAACTTTGATTCCGCATATTGAAGGATTAGTGGGCTGGGCTTTGGAAAATATGGATAC
GATTCTGGAGCATAGAAAAAGTAACTGA

Upstream 100 bases:

>100_bases
ATCTACCTTAATTGAAAAATACAAGAACGAACCTCAGAATAAGGTAGTTACATGGAAGTAACTATTGTTGAAACTCAGTA
TAATACAAAACGTTAAAAAG

Downstream 100 bases:

>100_bases
CCGGATTATGAATAAAGTAGTGGATACTGTTCTACAAAGTATTCACTATTTTATTTCATTCCATTTCGGCGGAGTTGTAT
TTAATAGATTGCGCACGAAG

Product: putative transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 115; Mature: 115

Protein sequence:

>115_residues
MKNFHPTGNCPVRDVISRLGDKWSMLVLITLNANGTMRFSDIHKTIEDISQRMLTVTLRTLESDGLIERKIYAEVPPRVE
YYLTDTGGTLIPHIEGLVGWALENMDTILEHRKSN

Sequences:

>Translated_115_residues
MKNFHPTGNCPVRDVISRLGDKWSMLVLITLNANGTMRFSDIHKTIEDISQRMLTVTLRTLESDGLIERKIYAEVPPRVE
YYLTDTGGTLIPHIEGLVGWALENMDTILEHRKSN
>Mature_115_residues
MKNFHPTGNCPVRDVISRLGDKWSMLVLITLNANGTMRFSDIHKTIEDISQRMLTVTLRTLESDGLIERKIYAEVPPRVE
YYLTDTGGTLIPHIEGLVGWALENMDTILEHRKSN

Specific function: Unknown

COG id: COG1733

COG function: function code K; Predicted transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH hxlR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87082391, Length=104, Percent_Identity=37.5, Blast_Score=82, Evalue=1e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002577
- InterPro:   IPR011991 [H]

Pfam domain/function: PF01638 DUF24 [H]

EC number: NA

Molecular weight: Translated: 13110; Mature: 13110

Theoretical pI: Translated: 6.51; Mature: 6.51

Prosite motif: PS51118 HTH_HXLR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
4.3 %Met     (Translated Protein)
5.2 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
4.3 %Met     (Mature Protein)
5.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKNFHPTGNCPVRDVISRLGDKWSMLVLITLNANGTMRFSDIHKTIEDISQRMLTVTLRT
CCCCCCCCCCCHHHHHHHCCCCEEEEEEEEECCCCEEEHHHHHHHHHHHHHHHHHHHHHH
LESDGLIERKIYAEVPPRVEYYLTDTGGTLIPHIEGLVGWALENMDTILEHRKSN
HCCCCCEEHHHCCCCCCCEEEEEECCCCEECHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MKNFHPTGNCPVRDVISRLGDKWSMLVLITLNANGTMRFSDIHKTIEDISQRMLTVTLRT
CCCCCCCCCCCHHHHHHHCCCCEEEEEEEEECCCCEEEHHHHHHHHHHHHHHHHHHHHHH
LESDGLIERKIYAEVPPRVEYYLTDTGGTLIPHIEGLVGWALENMDTILEHRKSN
HCCCCCEEHHHCCCCCCCEEEEEECCCCEECHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9371463 [H]