Definition | Bacteroides thetaiotaomicron VPI-5482 chromosome, complete genome. |
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Accession | NC_004663 |
Length | 6,260,361 |
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The map label for this gene is 29346656
Identifier: 29346656
GI number: 29346656
Start: 1550476
End: 1551156
Strand: Reverse
Name: 29346656
Synonym: BT_1246
Alternate gene names: NA
Gene position: 1551156-1550476 (Counterclockwise)
Preceding gene: 29346657
Following gene: 29346655
Centisome position: 24.78
GC content: 39.35
Gene sequence:
>681_bases ATGAATTATTCTCATTTTGTAGGTCTTGATGTAGGAAAAAAAACTTTCGATGCATCATTAATGTCCGCAGACGAAAAAGA GTTGTCTCACAAGTCTTTTGATAACACTCCAACTGGGATCCAATCTTTATTGGATTGGATAGCTGGTTATCATCTCTCTT TATCCAAACTCTTGTTCTGTGCTGAAAACATGGGAAGTTATGTCACAGAGTTATCTGTTTCCAGTGTCTCCATGGGATTT TCCCTGGCTTTGGTTTGCCCGTTGACCATCAAGAAGTCCATAGGCTTGCAACGAGGCAAAAATGACCGCATTGACGCCAA AAGAATAGCGAACTATGCGGTATTACACTATCGAAAACTGGAGTTATACAAATTGCCTGACAAAGACTTGGTGAGACTGC GGGGATGGATTATTATACGTGACAATTTGGTCAAGCAAAAAGTATCAAGCATAAAGTTATTGGAAACATTCTCCTGGATG GCTAAGTTGGCTGATGTGACAGAATCCATTTCTTTTTTGGAAGAGCAGCTCAAGTCGATAAAAGAAAGAATCCCCTGGAG TGGAAAGAGATATGGAGCAACTAATAGCCGCCAGTACATCGCTTTACACAAACTACTTGCTATTAAGAAGTATAAAAGGA ATAGGAATTATCAATGCCATTGTATTACTGTGTGTTACTGA
Upstream 100 bases:
>100_bases CTCTTAATAGGAGAACCTAGCCAGTTAGAATTGTAGGCTCACGACCTAATAAATGTATTAGCTGTTTCTCCTTCATGTTT AATACTGTAAATACAAAGTT
Downstream 100 bases:
>100_bases CAATTTTCAAAGATTTGACAACCCGAGGAAATTTGCCTGCTATTGTGGGGTCGCCCCATTTGAACATACTTCAGGTATTT CCATACGGGGAAAAACGCAG
Product: transposase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 226; Mature: 226
Protein sequence:
>226_residues MNYSHFVGLDVGKKTFDASLMSADEKELSHKSFDNTPTGIQSLLDWIAGYHLSLSKLLFCAENMGSYVTELSVSSVSMGF SLALVCPLTIKKSIGLQRGKNDRIDAKRIANYAVLHYRKLELYKLPDKDLVRLRGWIIIRDNLVKQKVSSIKLLETFSWM AKLADVTESISFLEEQLKSIKERIPWSGKRYGATNSRQYIALHKLLAIKKYKRNRNYQCHCITVCY
Sequences:
>Translated_226_residues MNYSHFVGLDVGKKTFDASLMSADEKELSHKSFDNTPTGIQSLLDWIAGYHLSLSKLLFCAENMGSYVTELSVSSVSMGF SLALVCPLTIKKSIGLQRGKNDRIDAKRIANYAVLHYRKLELYKLPDKDLVRLRGWIIIRDNLVKQKVSSIKLLETFSWM AKLADVTESISFLEEQLKSIKERIPWSGKRYGATNSRQYIALHKLLAIKKYKRNRNYQCHCITVCY >Mature_226_residues MNYSHFVGLDVGKKTFDASLMSADEKELSHKSFDNTPTGIQSLLDWIAGYHLSLSKLLFCAENMGSYVTELSVSSVSMGF SLALVCPLTIKKSIGLQRGKNDRIDAKRIANYAVLHYRKLELYKLPDKDLVRLRGWIIIRDNLVKQKVSSIKLLETFSWM AKLADVTESISFLEEQLKSIKERIPWSGKRYGATNSRQYIALHKLLAIKKYKRNRNYQCHCITVCY
Specific function: Unknown
COG id: COG3547
COG function: function code L; Transposase and inactivated derivatives
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 25893; Mature: 25893
Theoretical pI: Translated: 10.01; Mature: 10.01
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.2 %Cys (Translated Protein) 2.2 %Met (Translated Protein) 4.4 %Cys+Met (Translated Protein) 2.2 %Cys (Mature Protein) 2.2 %Met (Mature Protein) 4.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNYSHFVGLDVGKKTFDASLMSADEKELSHKSFDNTPTGIQSLLDWIAGYHLSLSKLLFC CCCCEEEECCCCCHHHHHHHHCCCHHHHHHCCCCCCCHHHHHHHHHHHCHHHHHHHHHHH AENMGSYVTELSVSSVSMGFSLALVCPLTIKKSIGLQRGKNDRIDAKRIANYAVLHYRKL HHHHHHHHHHHHHHHHHCCCCEEEHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHEEEE ELYKLPDKDLVRLRGWIIIRDNLVKQKVSSIKLLETFSWMAKLADVTESISFLEEQLKSI EEEECCCHHHHHHHCEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH KERIPWSGKRYGATNSRQYIALHKLLAIKKYKRNRNYQCHCITVCY HHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEEEEC >Mature Secondary Structure MNYSHFVGLDVGKKTFDASLMSADEKELSHKSFDNTPTGIQSLLDWIAGYHLSLSKLLFC CCCCEEEECCCCCHHHHHHHHCCCHHHHHHCCCCCCCHHHHHHHHHHHCHHHHHHHHHHH AENMGSYVTELSVSSVSMGFSLALVCPLTIKKSIGLQRGKNDRIDAKRIANYAVLHYRKL HHHHHHHHHHHHHHHHHCCCCEEEHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHEEEE ELYKLPDKDLVRLRGWIIIRDNLVKQKVSSIKLLETFSWMAKLADVTESISFLEEQLKSI EEEECCCHHHHHHHCEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH KERIPWSGKRYGATNSRQYIALHKLLAIKKYKRNRNYQCHCITVCY HHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEEEEC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA