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The map label for this gene is araC [C]

Identifier: 29346645

GI number: 29346645

Start: 1536248

End: 1537150

Strand: Reverse

Name: araC [C]

Synonym: BT_1235

Alternate gene names: 29346645

Gene position: 1537150-1536248 (Counterclockwise)

Preceding gene: 29346646

Following gene: 29346643

Centisome position: 24.55

GC content: 42.19

Gene sequence:

>903_bases
ATGGATATGCAAGTTGTTCCTAAGATAGGTATTTCTTCGGTAGTTCATTCTAAACATATAGATCCGGGTAGTATTGATGT
GGTCGGCAATGATATAGCGCTCTTCGACACGGAGAGCGTTATTTCCCTTTATAATGGCCCCAGTAAACTGGAAGTGGTGA
GCATCGGACTTTGTCTGGAAGGCTCTACTCGTTTTAATATCAGTCTGCGTGAGTTTGAACTGATTCCGGGCAGAATGGTT
ATTGCGTTGCCCAATCAGATAATCGAACATCGTCAGTTCAGTTCCAATTTCAGAGGGATTTTCTTTGCTGTATCAAAAAG
TCTGTTGGAATCATTGCCCAAAGTTGGTAATGTGCTTTCATTCTTTTTCTTTCTGAAAGATTACCCTTGTTTTGATCTCA
ATCTGCACGAGCAGGAGATGATTAAGGAGTATCATGCTTTCATCAGAAAGAGATTGAAAAATAAAGACGATAGGTACCGT
AGGGAGGTAGTAATGGGATTGATGCAGGGCTTCTTCTTTGAGCTTTGCAATATTTTCAACAGTTATGCTCCGGATGCTTC
TGCCGTTGTCAAAAGTAAAAGTCGTAAAGAATATATATTTGAGCGCTTCTATGAATCTTTGGTTCAGTCTTATCAGTCGG
AACGCAGCGTGAAGTTTTATGCGGATCAGTTGTGTCTGACGCCGAAACATCTGTCCGGAGTTGTCAAGGAAGTCAGCGGG
AAGACGGTAGGGGAGTGGATTGACGAATTAGTGATCTTGGAAGCGAAGGCACTCTTGAATTCTTCGAGCATGAACATACA
GGAGATAGCCGACCGTTTAAACTTTGCCAACCAGTCGTTCTTCGGTAAGTACTTTAAGCATTATACCGGTATGTCTCCCA
AAGAATACCGGAAAAGCAGATAG

Upstream 100 bases:

>100_bases
ATAAGTAGGCAAAAGTGTTCTTTTTGACAGATAATCTCTCGCCTTAGGTTGAACATCTCATTATTACTGGTATCTTTGTC
GCAACCAAAAGAGAGAGTGT

Downstream 100 bases:

>100_bases
CTTCCAAAATTACAAAACTACAGAACGCCTGAACGTACTCGGCTCAATGTTTCCGGTGTCATCAGCAGGTAAGAAGCGAT
GTGTGCCAAAGGTGCCCGTT

Product: AraC-type transcription regulator

Products: NA

Alternate protein names: Transcriptional Regulator; AraC Family Transcriptional Regulator; AraC-Type Transcription Regulator; Helix-Turn-Helix Domain-Containing Protein; Helix-Turn-Helix- Domain Containing Protein AraC Type; Transcriptional Regulator Arac Family; Transcription Regulator; Response Regulator; AraC/XylS Family Transcriptional Regulator; AraC-Family Regulatory Protein; Transcription Regulator AraC-Type; Bacterial Regulatory Helix-Turn-Helix Protein; AraC-Type Transcriptional Regulator; Transcriptional Regulator AraC Family Protein; AraC Family Regulatory Helix-Turn-Helix Protein; AraC Family Regulatory Protein; AraC-Family Transcriptional Regulator; Transcriptional Regulator PobR; Phosphomethylpyrimidine Kinase; Two Component Transcriptional Regulator AraC Family

Number of amino acids: Translated: 300; Mature: 300

Protein sequence:

>300_residues
MDMQVVPKIGISSVVHSKHIDPGSIDVVGNDIALFDTESVISLYNGPSKLEVVSIGLCLEGSTRFNISLREFELIPGRMV
IALPNQIIEHRQFSSNFRGIFFAVSKSLLESLPKVGNVLSFFFFLKDYPCFDLNLHEQEMIKEYHAFIRKRLKNKDDRYR
REVVMGLMQGFFFELCNIFNSYAPDASAVVKSKSRKEYIFERFYESLVQSYQSERSVKFYADQLCLTPKHLSGVVKEVSG
KTVGEWIDELVILEAKALLNSSSMNIQEIADRLNFANQSFFGKYFKHYTGMSPKEYRKSR

Sequences:

>Translated_300_residues
MDMQVVPKIGISSVVHSKHIDPGSIDVVGNDIALFDTESVISLYNGPSKLEVVSIGLCLEGSTRFNISLREFELIPGRMV
IALPNQIIEHRQFSSNFRGIFFAVSKSLLESLPKVGNVLSFFFFLKDYPCFDLNLHEQEMIKEYHAFIRKRLKNKDDRYR
REVVMGLMQGFFFELCNIFNSYAPDASAVVKSKSRKEYIFERFYESLVQSYQSERSVKFYADQLCLTPKHLSGVVKEVSG
KTVGEWIDELVILEAKALLNSSSMNIQEIADRLNFANQSFFGKYFKHYTGMSPKEYRKSR
>Mature_300_residues
MDMQVVPKIGISSVVHSKHIDPGSIDVVGNDIALFDTESVISLYNGPSKLEVVSIGLCLEGSTRFNISLREFELIPGRMV
IALPNQIIEHRQFSSNFRGIFFAVSKSLLESLPKVGNVLSFFFFLKDYPCFDLNLHEQEMIKEYHAFIRKRLKNKDDRYR
REVVMGLMQGFFFELCNIFNSYAPDASAVVKSKSRKEYIFERFYESLVQSYQSERSVKFYADQLCLTPKHLSGVVKEVSG
KTVGEWIDELVILEAKALLNSSSMNIQEIADRLNFANQSFFGKYFKHYTGMSPKEYRKSR

Specific function: This Protein Controls The Expression Of At Least Six Genes That Are Involved In The Transport And Catabolism Of L-Arabinose. It Regulates Initiation Of Transcription Of The Arabad Operon And It Also Controls Its Own Synthesis. The L- Arabinose Operon Dis

COG id: COG2207

COG function: function code K; AraC-type DNA-binding domain-containing proteins

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 34491; Mature: 34491

Theoretical pI: Translated: 8.56; Mature: 8.56

Prosite motif: PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDMQVVPKIGISSVVHSKHIDPGSIDVVGNDIALFDTESVISLYNGPSKLEVVSIGLCLE
CCCCCCCCCCHHHHHHHCCCCCCCEEEECCCEEEECHHHHHHHHCCCCCEEEEEEEEEEC
GSTRFNISLREFELIPGRMVIALPNQIIEHRQFSSNFRGIFFAVSKSLLESLPKVGNVLS
CCCEEEEEHHHEEECCCCEEEECCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH
FFFFLKDYPCFDLNLHEQEMIKEYHAFIRKRLKNKDDRYRREVVMGLMQGFFFELCNIFN
HHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHH
SYAPDASAVVKSKSRKEYIFERFYESLVQSYQSERSVKFYADQLCLTPKHLSGVVKEVSG
HCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCHHHHHHHHHHHCC
KTVGEWIDELVILEAKALLNSSSMNIQEIADRLNFANQSFFGKYFKHYTGMSPKEYRKSR
CHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCHHHHHHHHHHHCCCCHHHHHCCC
>Mature Secondary Structure
MDMQVVPKIGISSVVHSKHIDPGSIDVVGNDIALFDTESVISLYNGPSKLEVVSIGLCLE
CCCCCCCCCCHHHHHHHCCCCCCCEEEECCCEEEECHHHHHHHHCCCCCEEEEEEEEEEC
GSTRFNISLREFELIPGRMVIALPNQIIEHRQFSSNFRGIFFAVSKSLLESLPKVGNVLS
CCCEEEEEHHHEEECCCCEEEECCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH
FFFFLKDYPCFDLNLHEQEMIKEYHAFIRKRLKNKDDRYRREVVMGLMQGFFFELCNIFN
HHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHH
SYAPDASAVVKSKSRKEYIFERFYESLVQSYQSERSVKFYADQLCLTPKHLSGVVKEVSG
HCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCHHHHHHHHHHHCC
KTVGEWIDELVILEAKALLNSSSMNIQEIADRLNFANQSFFGKYFKHYTGMSPKEYRKSR
CHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCHHHHHHHHHHHCCCCHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA