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The map label for this gene is xynB [H]

Identifier: 29346602

GI number: 29346602

Start: 1487562

End: 1488953

Strand: Reverse

Name: xynB [H]

Synonym: BT_1192

Alternate gene names: 29346602

Gene position: 1488953-1487562 (Counterclockwise)

Preceding gene: 29346606

Following gene: 29346601

Centisome position: 23.78

GC content: 47.41

Gene sequence:

>1392_bases
ATGAAACAGAAATTCTCTTCTCTTTTTGTATTGCTGGTCCTGCTATTGACAGGACTGCAAGTCTCGGCACAAAGTACGCC
AAAACCATTTGATATTGAACAGCCTTCTCTTCGTGTTTTCCTGCCGGCACCGGAACTGGCGACAGGTCGTGCTGTGGTAG
CCTGTCCGGGTGGGGGATACTCCGGCTTGGCGGTCAATCACGAAGGGTATGACTGGGCGCCGTATTTCAACAAACAAGGA
ATTGCATTGATTGTTCTCAAATACCGGATGCCGAAAGGCGACCGCACCCTCCCGATCTCCGACGCCGAAGCAGCCATGAA
AATGGTACGTGACAGCGCTGACGTATGGAATCTGAATCCGAATGATATTGGTATCATGGGGTCTTCTGCCGGAGGCCATC
TAGCTTCGACCATCGCTACACATGCGCCTGAAGCACTTCGTCCCAACTTCCAGATTCTCTTCTATCCGGTGATCACGATG
GACAAATCTTTCACTCACATGGGCTCTCATGACAATCTGTTGGGCAAGGACGCTTCTGCCGATCTGGAAAAAGAATTCTC
CAACGAGAAGCAAGTGACCAAAGAGACTCCCCGTGCTTTCATTGTTTATAGCGATGATGACAAGGTAGTTCCTCCTGCCA
ACGGAGTCAACTATTATCTGGCTTTAAATAAGAAAGGTGTTCCTTCCGTTCTCCATATTTATCCTACAGGCGGACACGGT
TGGGGAATCCGTGAAGATTTCCTCTACAAGAGTGAAATGCAGAACGAACTGACTTCTTGGTTGCGTAGTTTCAAGGCTCC
TCGCAAAGATGCCGTCCGTGTGGCTTGCATCGGCAACAGTATTACGTTCGGAGCAGGAATAAGAAATCGCAGCCGCGACA
GCTATCCTTCCGTACTGGCCCGTATGCTGGGCGACAGCTACTGGGTGAAAAACTTCGGAGTGAGCGCCCGTACCATGCTG
AACAAAGGAGATCATCCTTATATGAACGAACCTGCTTATAAGAATGCGTTAGCTTTTAATCCTAATATCGTCGTTATCAA
ACTTGGTACAAACGACAGCAAATCATTCAACTGGAAATACAAAGCAGACTTCATGAAAGATGCGCAGACCATGATCGACG
CTTTCAAAGGTCTTCCTTCACAGCCGAAGATTTATCTCTGCTATCCTTCCAAAGCTTATCTGACAGGTGACGGCATCAAC
GATGATATTATCTCTAAAGAAATCATTCCGATGATCAAGAAGCTCGCCAAGAAAAACGACCTGTCTGTTATAGACCTCCA
TACTGCTATGGACGGAATGCCCGAACTCTTTCCGGACCGTATTCATCCGAACGAAAAGGGAGCGCAGGTAATGGCAAAAG
CTGTCTATCAATCTATCTCTACTTTAAAATAA

Upstream 100 bases:

>100_bases
TCCTTGCATATCATTTTTTCTATTTAAAAGGAGGCGCAAAGATACATAAAATTACTATCTTCGCACATCAAATATTCATT
AATCAAAGTATACAGATACT

Downstream 100 bases:

>100_bases
AAAATATGTTACCGATCATTGAGCTTTTAACCGGATAATTGTATTAATAATATAGCCCCTGATAAAAGAAAGGAGAATAT
TATGATTAGAACAGTTGCTG

Product: putative xylanase

Products: NA

Alternate protein names: Xylanase B; 1,4-beta-D-xylan xylanohydrolase B [H]

Number of amino acids: Translated: 463; Mature: 463

Protein sequence:

>463_residues
MKQKFSSLFVLLVLLLTGLQVSAQSTPKPFDIEQPSLRVFLPAPELATGRAVVACPGGGYSGLAVNHEGYDWAPYFNKQG
IALIVLKYRMPKGDRTLPISDAEAAMKMVRDSADVWNLNPNDIGIMGSSAGGHLASTIATHAPEALRPNFQILFYPVITM
DKSFTHMGSHDNLLGKDASADLEKEFSNEKQVTKETPRAFIVYSDDDKVVPPANGVNYYLALNKKGVPSVLHIYPTGGHG
WGIREDFLYKSEMQNELTSWLRSFKAPRKDAVRVACIGNSITFGAGIRNRSRDSYPSVLARMLGDSYWVKNFGVSARTML
NKGDHPYMNEPAYKNALAFNPNIVVIKLGTNDSKSFNWKYKADFMKDAQTMIDAFKGLPSQPKIYLCYPSKAYLTGDGIN
DDIISKEIIPMIKKLAKKNDLSVIDLHTAMDGMPELFPDRIHPNEKGAQVMAKAVYQSISTLK

Sequences:

>Translated_463_residues
MKQKFSSLFVLLVLLLTGLQVSAQSTPKPFDIEQPSLRVFLPAPELATGRAVVACPGGGYSGLAVNHEGYDWAPYFNKQG
IALIVLKYRMPKGDRTLPISDAEAAMKMVRDSADVWNLNPNDIGIMGSSAGGHLASTIATHAPEALRPNFQILFYPVITM
DKSFTHMGSHDNLLGKDASADLEKEFSNEKQVTKETPRAFIVYSDDDKVVPPANGVNYYLALNKKGVPSVLHIYPTGGHG
WGIREDFLYKSEMQNELTSWLRSFKAPRKDAVRVACIGNSITFGAGIRNRSRDSYPSVLARMLGDSYWVKNFGVSARTML
NKGDHPYMNEPAYKNALAFNPNIVVIKLGTNDSKSFNWKYKADFMKDAQTMIDAFKGLPSQPKIYLCYPSKAYLTGDGIN
DDIISKEIIPMIKKLAKKNDLSVIDLHTAMDGMPELFPDRIHPNEKGAQVMAKAVYQSISTLK
>Mature_463_residues
MKQKFSSLFVLLVLLLTGLQVSAQSTPKPFDIEQPSLRVFLPAPELATGRAVVACPGGGYSGLAVNHEGYDWAPYFNKQG
IALIVLKYRMPKGDRTLPISDAEAAMKMVRDSADVWNLNPNDIGIMGSSAGGHLASTIATHAPEALRPNFQILFYPVITM
DKSFTHMGSHDNLLGKDASADLEKEFSNEKQVTKETPRAFIVYSDDDKVVPPANGVNYYLALNKKGVPSVLHIYPTGGHG
WGIREDFLYKSEMQNELTSWLRSFKAPRKDAVRVACIGNSITFGAGIRNRSRDSYPSVLARMLGDSYWVKNFGVSARTML
NKGDHPYMNEPAYKNALAFNPNIVVIKLGTNDSKSFNWKYKADFMKDAQTMIDAFKGLPSQPKIYLCYPSKAYLTGDGIN
DDIISKEIIPMIKKLAKKNDLSVIDLHTAMDGMPELFPDRIHPNEKGAQVMAKAVYQSISTLK

Specific function: B.fibrisolvens is located in the rumen of ruminant animals, where it contributes to the animal's digestion of plant material by hydrolyzing hemicellulose with its xylanases [H]

COG id: COG0657

COG function: function code I; Esterase/lipase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the glycosyl hydrolase 10 (cellulase F) family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013094
- InterPro:   IPR001000
- InterPro:   IPR017853
- InterPro:   IPR013781 [H]

Pfam domain/function: PF07859 Abhydrolase_3; PF00331 Glyco_hydro_10 [H]

EC number: =3.2.1.8 [H]

Molecular weight: Translated: 51241; Mature: 51241

Theoretical pI: Translated: 9.39; Mature: 9.39

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
3.7 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
3.7 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKQKFSSLFVLLVLLLTGLQVSAQSTPKPFDIEQPSLRVFLPAPELATGRAVVACPGGGY
CCCHHHHHHHHHHHHHCCCEEECCCCCCCCCCCCCCEEEEECCCCCCCCCEEEEECCCCC
SGLAVNHEGYDWAPYFNKQGIALIVLKYRMPKGDRTLPISDAEAAMKMVRDSADVWNLNP
CCEEECCCCCCCCCCCCCCCEEEEEEEEECCCCCCCCCCCHHHHHHHHHHCCCCEECCCC
NDIGIMGSSAGGHLASTIATHAPEALRPNFQILFYPVITMDKSFTHMGSHDNLLGKDASA
CCEEEEECCCCCHHHHHHHHCCCHHHCCCCEEEEEEEEECCCCHHHCCCCCCCCCCCCCC
DLEKEFSNEKQVTKETPRAFIVYSDDDKVVPPANGVNYYLALNKKGVPSVLHIYPTGGHG
HHHHHHCCHHHHHHCCCCEEEEECCCCCCCCCCCCCEEEEEECCCCCCCEEEEEECCCCC
WGIREDFLYKSEMQNELTSWLRSFKAPRKDAVRVACIGNSITFGAGIRNRSRDSYPSVLA
CCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCEEECCCCCCCCCCCHHHHHH
RMLGDSYWVKNFGVSARTMLNKGDHPYMNEPAYKNALAFNPNIVVIKLGTNDSKSFNWKY
HHHCCCCEEHHCCCCHHHHHCCCCCCCCCCCCCCCEEEECCCEEEEEECCCCCCCEEEEE
KADFMKDAQTMIDAFKGLPSQPKIYLCYPSKAYLTGDGINDDIISKEIIPMIKKLAKKND
EHHHHHHHHHHHHHHHCCCCCCEEEEEECCCEEEECCCCCHHHHHHHHHHHHHHHHCCCC
LSVIDLHTAMDGMPELFPDRIHPNEKGAQVMAKAVYQSISTLK
CEEEEEHHHHCCCHHHCCCCCCCCCHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MKQKFSSLFVLLVLLLTGLQVSAQSTPKPFDIEQPSLRVFLPAPELATGRAVVACPGGGY
CCCHHHHHHHHHHHHHCCCEEECCCCCCCCCCCCCCEEEEECCCCCCCCCEEEEECCCCC
SGLAVNHEGYDWAPYFNKQGIALIVLKYRMPKGDRTLPISDAEAAMKMVRDSADVWNLNP
CCEEECCCCCCCCCCCCCCCEEEEEEEEECCCCCCCCCCCHHHHHHHHHHCCCCEECCCC
NDIGIMGSSAGGHLASTIATHAPEALRPNFQILFYPVITMDKSFTHMGSHDNLLGKDASA
CCEEEEECCCCCHHHHHHHHCCCHHHCCCCEEEEEEEEECCCCHHHCCCCCCCCCCCCCC
DLEKEFSNEKQVTKETPRAFIVYSDDDKVVPPANGVNYYLALNKKGVPSVLHIYPTGGHG
HHHHHHCCHHHHHHCCCCEEEEECCCCCCCCCCCCCEEEEEECCCCCCCEEEEEECCCCC
WGIREDFLYKSEMQNELTSWLRSFKAPRKDAVRVACIGNSITFGAGIRNRSRDSYPSVLA
CCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCEEECCCCCCCCCCCHHHHHH
RMLGDSYWVKNFGVSARTMLNKGDHPYMNEPAYKNALAFNPNIVVIKLGTNDSKSFNWKY
HHHCCCCEEHHCCCCHHHHHCCCCCCCCCCCCCCCEEEECCCEEEEEECCCCCCCEEEEE
KADFMKDAQTMIDAFKGLPSQPKIYLCYPSKAYLTGDGINDDIISKEIIPMIKKLAKKND
EHHHHHHHHHHHHHHHCCCCCCEEEEEECCCEEEECCCCCHHHHHHHHHHHHHHHHCCCC
LSVIDLHTAMDGMPELFPDRIHPNEKGAQVMAKAVYQSISTLK
CEEEEEHHHHCCCHHHCCCCCCCCCHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 1909424 [H]