Definition | Bacteroides thetaiotaomicron VPI-5482 chromosome, complete genome. |
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Accession | NC_004663 |
Length | 6,260,361 |
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The map label for this gene is 29346561
Identifier: 29346561
GI number: 29346561
Start: 1435606
End: 1436853
Strand: Reverse
Name: 29346561
Synonym: BT_1151
Alternate gene names: NA
Gene position: 1436853-1435606 (Counterclockwise)
Preceding gene: 29346562
Following gene: 29346560
Centisome position: 22.95
GC content: 43.83
Gene sequence:
>1248_bases ATGGCTATTATCAAACCTTTTAAAGGCGTTCGCCCTCCACAAGACCTGGTTGAACAGGTTGCTTCCCGTCCTTACGATGT ATTAAACTCAGAAGAAGCGCGTACAGAAGCAGCTGGAAATGAAAAATCCCTTTATCATATCATTAAGCCCGAGATTGACT TTCCTGTTGGTACGGATGAACACGATGAACGTGTTTATGAGAAAGCTGCCGAAAACTTCCGGCTGTTTCAGGATAAAGGC TGGTTAGTGCAGGATGCAAAGGAAAACTATTACATCTATGCCCAGACCATGAACGGGAAAACTCAGTATGGACTGGTAGT AGGCGCTTATGTTCCTGACTATATGAACGGTATCATCAAGAAGCATGAGCTTACCCGTCGTGATAAGGAAGAAGACCGTA TGAAGCACGTTCGTGTGAACAATGCGAATATCGAACCTGTATTCTTTGCCTATCCCGATAATGCGAAATTGGATACAATC ATTCGGAAATACACTGCCGAAAAGCCTGTTTACGACTTTATCGCTCCGGGTGATGGCTTCGGACATACTTTCTGGATTGT TGACCAGGACGAAGATATCGCTGCAATTACTGCAGAATTTGCTAAAATGCCGGCATTATATATTGCCGACGGGCATCATC GTTCCGCTGCTGCTGCTCTGGTAGGTGCCGAGAAAGCAAAGCAAAACGCGAACCATCGTGGCGATGAAGAGTATAACTAT TTCATGGCTGTATGTTTCCCTGCCAATCAATTGACTATCATCGACTATAACCGTGTAGTAAAAGACCTCAACGGGCTGAC TCCCGAACAATTTCTTGCTGCATTGGATAAGAATTTTGTTGTAGAAGAAAAGGGTACAGATATCTATAAACCGTCCGGTT TGCACAATTTCTCCCTCTATCTTGGCGACAAGTGGTATAGTCTGACGGCAAAGGCAGGTACATACAATGACAATGATCCT ATCGGCGTGCTTGACGTTACTATTTCTTCCAATCTGATTTTAGATGAGATTTTAGGAATCAAAGACCTCCGTTCGGATAA GCGTATTGACTTTGTAGGCGGTATCCGCGGTTTGGGAGAATTGAAGAAGCGTGTTGACAGTGGAGAAATGAAAGTAGCTC TGGCTCTTTATCCCGTATCCATGAAGCAATTGATGGATATTGCCGATACTGGCAACATTATGCCTCCCAAAACGACTTGG TTTGAACCGAAACTTCGTTCAGGATTGGTTATCCATAAGTTGGATTAA
Upstream 100 bases:
>100_bases TGGTCATTAAGCAGTATATTTAGAAATATGTTATCAGATTTCGCCCTCGGCTTTTGCGAGGGCGTATCTGTTCTACTAAT CTTAAAACATACCATGACTT
Downstream 100 bases:
>100_bases GACATATTCTATATAGAAAATAGAGCGGTCAATCTCTCACAATCAACAGGACATTTGTGAGAGATTGACCGCTTGTTTTT GTATAAATGACCGCCCGATT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 415; Mature: 414
Protein sequence:
>415_residues MAIIKPFKGVRPPQDLVEQVASRPYDVLNSEEARTEAAGNEKSLYHIIKPEIDFPVGTDEHDERVYEKAAENFRLFQDKG WLVQDAKENYYIYAQTMNGKTQYGLVVGAYVPDYMNGIIKKHELTRRDKEEDRMKHVRVNNANIEPVFFAYPDNAKLDTI IRKYTAEKPVYDFIAPGDGFGHTFWIVDQDEDIAAITAEFAKMPALYIADGHHRSAAAALVGAEKAKQNANHRGDEEYNY FMAVCFPANQLTIIDYNRVVKDLNGLTPEQFLAALDKNFVVEEKGTDIYKPSGLHNFSLYLGDKWYSLTAKAGTYNDNDP IGVLDVTISSNLILDEILGIKDLRSDKRIDFVGGIRGLGELKKRVDSGEMKVALALYPVSMKQLMDIADTGNIMPPKTTW FEPKLRSGLVIHKLD
Sequences:
>Translated_415_residues MAIIKPFKGVRPPQDLVEQVASRPYDVLNSEEARTEAAGNEKSLYHIIKPEIDFPVGTDEHDERVYEKAAENFRLFQDKG WLVQDAKENYYIYAQTMNGKTQYGLVVGAYVPDYMNGIIKKHELTRRDKEEDRMKHVRVNNANIEPVFFAYPDNAKLDTI IRKYTAEKPVYDFIAPGDGFGHTFWIVDQDEDIAAITAEFAKMPALYIADGHHRSAAAALVGAEKAKQNANHRGDEEYNY FMAVCFPANQLTIIDYNRVVKDLNGLTPEQFLAALDKNFVVEEKGTDIYKPSGLHNFSLYLGDKWYSLTAKAGTYNDNDP IGVLDVTISSNLILDEILGIKDLRSDKRIDFVGGIRGLGELKKRVDSGEMKVALALYPVSMKQLMDIADTGNIMPPKTTW FEPKLRSGLVIHKLD >Mature_414_residues AIIKPFKGVRPPQDLVEQVASRPYDVLNSEEARTEAAGNEKSLYHIIKPEIDFPVGTDEHDERVYEKAAENFRLFQDKGW LVQDAKENYYIYAQTMNGKTQYGLVVGAYVPDYMNGIIKKHELTRRDKEEDRMKHVRVNNANIEPVFFAYPDNAKLDTII RKYTAEKPVYDFIAPGDGFGHTFWIVDQDEDIAAITAEFAKMPALYIADGHHRSAAAALVGAEKAKQNANHRGDEEYNYF MAVCFPANQLTIIDYNRVVKDLNGLTPEQFLAALDKNFVVEEKGTDIYKPSGLHNFSLYLGDKWYSLTAKAGTYNDNDPI GVLDVTISSNLILDEILGIKDLRSDKRIDFVGGIRGLGELKKRVDSGEMKVALALYPVSMKQLMDIADTGNIMPPKTTWF EPKLRSGLVIHKLD
Specific function: Unknown
COG id: COG4198
COG function: function code S; Uncharacterized conserved protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 46883; Mature: 46752
Theoretical pI: Translated: 5.36; Mature: 5.36
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.2 %Cys (Translated Protein) 2.4 %Met (Translated Protein) 2.7 %Cys+Met (Translated Protein) 0.2 %Cys (Mature Protein) 2.2 %Met (Mature Protein) 2.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAIIKPFKGVRPPQDLVEQVASRPYDVLNSEEARTEAAGNEKSLYHIIKPEIDFPVGTDE CCCCCCCCCCCCHHHHHHHHHCCCHHHCCCCHHHHHHCCCCCCEEEEECCCCCCCCCCCH HDERVYEKAAENFRLFQDKGWLVQDAKENYYIYAQTMNGKTQYGLVVGAYVPDYMNGIIK HHHHHHHHHHHHCEEEECCCCEEEECCCCEEEEEEEECCCEEEEEEEECCCCHHHHHHHH KHELTRRDKEEDRMKHVRVNNANIEPVFFAYPDNAKLDTIIRKYTAEKPVYDFIAPGDGF HHHHHHCCCHHHHHHEEEECCCCCCEEEEECCCCCHHHHHHHHHHCCCCCEEEECCCCCC GHTFWIVDQDEDIAAITAEFAKMPALYIADGHHRSAAAALVGAEKAKQNANHRGDEEYNY CCEEEEEECCCCHHHHHHHHHHCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCEE FMAVCFPANQLTIIDYNRVVKDLNGLTPEQFLAALDKNFVVEEKGTDIYKPSGLHNFSLY EEEEEECCCCEEEEEHHHHHHHHCCCCHHHHHHHHCCCEEEECCCCCCCCCCCCCEEEEE LGDKWYSLTAKAGTYNDNDPIGVLDVTISSNLILDEILGIKDLRSDKRIDFVGGIRGLGE ECCEEEEEEEECCCCCCCCCEEEEEEEECCCCHHHHHHCHHHCCCCCCEEHHHHHHHHHH LKKRVDSGEMKVALALYPVSMKQLMDIADTGNIMPPKTTWFEPKLRSGLVIHKLD HHHHCCCCCEEEEEEEECCCHHHHHHHHHCCCCCCCCCCCCCCHHHCCEEEEECC >Mature Secondary Structure AIIKPFKGVRPPQDLVEQVASRPYDVLNSEEARTEAAGNEKSLYHIIKPEIDFPVGTDE CCCCCCCCCCCHHHHHHHHHCCCHHHCCCCHHHHHHCCCCCCEEEEECCCCCCCCCCCH HDERVYEKAAENFRLFQDKGWLVQDAKENYYIYAQTMNGKTQYGLVVGAYVPDYMNGIIK HHHHHHHHHHHHCEEEECCCCEEEECCCCEEEEEEEECCCEEEEEEEECCCCHHHHHHHH KHELTRRDKEEDRMKHVRVNNANIEPVFFAYPDNAKLDTIIRKYTAEKPVYDFIAPGDGF HHHHHHCCCHHHHHHEEEECCCCCCEEEEECCCCCHHHHHHHHHHCCCCCEEEECCCCCC GHTFWIVDQDEDIAAITAEFAKMPALYIADGHHRSAAAALVGAEKAKQNANHRGDEEYNY CCEEEEEECCCCHHHHHHHHHHCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCEE FMAVCFPANQLTIIDYNRVVKDLNGLTPEQFLAALDKNFVVEEKGTDIYKPSGLHNFSLY EEEEEECCCCEEEEEHHHHHHHHCCCCHHHHHHHHCCCEEEECCCCCCCCCCCCCEEEEE LGDKWYSLTAKAGTYNDNDPIGVLDVTISSNLILDEILGIKDLRSDKRIDFVGGIRGLGE ECCEEEEEEEECCCCCCCCCEEEEEEEECCCCHHHHHHCHHHCCCCCCEEHHHHHHHHHH LKKRVDSGEMKVALALYPVSMKQLMDIADTGNIMPPKTTWFEPKLRSGLVIHKLD HHHHCCCCCEEEEEEEECCCHHHHHHHHHCCCCCCCCCCCCCCHHHCCEEEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA