Definition | Bacteroides thetaiotaomicron VPI-5482 chromosome, complete genome. |
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Accession | NC_004663 |
Length | 6,260,361 |
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The map label for this gene is 29346543
Identifier: 29346543
GI number: 29346543
Start: 1419376
End: 1419936
Strand: Reverse
Name: 29346543
Synonym: BT_1133
Alternate gene names: NA
Gene position: 1419936-1419376 (Counterclockwise)
Preceding gene: 29346544
Following gene: 29346537
Centisome position: 22.68
GC content: 51.16
Gene sequence:
>561_bases ATGGCAGACAAGAGCGCAGAAAAGGAAAGACTGTTCAACGAGTGGTTCACTGCATCCTATGACAGGTTGAGAGGGACGTT ACGCCGGTACGGAATGCTGGACGAGGACAATTTCCATGACACCTACCTTTTTGTAAGAAGGCAGGTGCTGGTTCCCGGAA AGGACATAACGGACTATGACGCGTATTTCATCGGATGCTACAAAAAGGCGGCCCTGGTAAAGATTAAAAGGGAGAATCGG TATGCACACCCTGAAGATGATTTCTTCCTCCGATGTGGCGAAGAGGCAAAATTCCTTTCCGAGGACGACCTGAACGGGTG CGAGCGGCTGGTAAGAGACATACTGCGTTTCGTAAGGCAGAAGTTCTCCTACGAGGAGTACCGGATGTTCATGCTCAGGT TCTATGAGGCGCAGTTCTCGTTCAAGGCACTGGCGGAATGCATGGGTATCTCGGCATCGGCCATATCGCAGAAAGTATGC AGGATAGTGGACGCGGTACGTACCCACAGCGGTTTCGCATGGAGAAGTCAGATGCTGGCGGTGGAAAGCTTCATGTATTG A
Upstream 100 bases:
>100_bases AAGCCTTGCCGGAGACCGCCGAAAAACAAACTGGAGGAAGCACAAGAAATAAGAATGCCTACCCGTGTAGGCCATGTATA ACTCAAAAAAATATAAAGCT
Downstream 100 bases:
>100_bases AAAAATTGTTTAACGGAAAAGTAAGAAAGTTATGGCACTGATAGTATACAACAGGGAAAACTCCCGTCCGCAGGAAGTCA CATACAAGGGAAAGCGGACC
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 186; Mature: 185
Protein sequence:
>186_residues MADKSAEKERLFNEWFTASYDRLRGTLRRYGMLDEDNFHDTYLFVRRQVLVPGKDITDYDAYFIGCYKKAALVKIKRENR YAHPEDDFFLRCGEEAKFLSEDDLNGCERLVRDILRFVRQKFSYEEYRMFMLRFYEAQFSFKALAECMGISASAISQKVC RIVDAVRTHSGFAWRSQMLAVESFMY
Sequences:
>Translated_186_residues MADKSAEKERLFNEWFTASYDRLRGTLRRYGMLDEDNFHDTYLFVRRQVLVPGKDITDYDAYFIGCYKKAALVKIKRENR YAHPEDDFFLRCGEEAKFLSEDDLNGCERLVRDILRFVRQKFSYEEYRMFMLRFYEAQFSFKALAECMGISASAISQKVC RIVDAVRTHSGFAWRSQMLAVESFMY >Mature_185_residues ADKSAEKERLFNEWFTASYDRLRGTLRRYGMLDEDNFHDTYLFVRRQVLVPGKDITDYDAYFIGCYKKAALVKIKRENRY AHPEDDFFLRCGEEAKFLSEDDLNGCERLVRDILRFVRQKFSYEEYRMFMLRFYEAQFSFKALAECMGISASAISQKVCR IVDAVRTHSGFAWRSQMLAVESFMY
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 22141; Mature: 22009
Theoretical pI: Translated: 7.85; Mature: 7.85
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.7 %Cys (Translated Protein) 3.8 %Met (Translated Protein) 6.5 %Cys+Met (Translated Protein) 2.7 %Cys (Mature Protein) 3.2 %Met (Mature Protein) 5.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MADKSAEKERLFNEWFTASYDRLRGTLRRYGMLDEDNFHDTYLFVRRQVLVPGKDITDYD CCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCCCCCHH AYFIGCYKKAALVKIKRENRYAHPEDDFFLRCGEEAKFLSEDDLNGCERLVRDILRFVRQ HHHHHHHHHHHHHEECCCCCCCCCCCCCEEECCCHHCCCCCCCCHHHHHHHHHHHHHHHH KFSYEEYRMFMLRFYEAQFSFKALAECMGISASAISQKVCRIVDAVRTHSGFAWRSQMLA HHCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHH VESFMY HHHHCC >Mature Secondary Structure ADKSAEKERLFNEWFTASYDRLRGTLRRYGMLDEDNFHDTYLFVRRQVLVPGKDITDYD CCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCCCCCHH AYFIGCYKKAALVKIKRENRYAHPEDDFFLRCGEEAKFLSEDDLNGCERLVRDILRFVRQ HHHHHHHHHHHHHEECCCCCCCCCCCCCEEECCCHHCCCCCCCCHHHHHHHHHHHHHHHH KFSYEEYRMFMLRFYEAQFSFKALAECMGISASAISQKVCRIVDAVRTHSGFAWRSQMLA HHCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHH VESFMY HHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA