Definition | Bacteroides thetaiotaomicron VPI-5482 chromosome, complete genome. |
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Accession | NC_004663 |
Length | 6,260,361 |
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The map label for this gene is 29346529
Identifier: 29346529
GI number: 29346529
Start: 1405597
End: 1408293
Strand: Reverse
Name: 29346529
Synonym: BT_1119
Alternate gene names: NA
Gene position: 1408293-1405597 (Counterclockwise)
Preceding gene: 29346531
Following gene: 29346528
Centisome position: 22.5
GC content: 41.68
Gene sequence:
>2697_bases ATGGGAAGAGTCAGTCTTTGTCTTGTCATAATGTTCTTCATCTGTAGTGCTCAAAAAATTGATGCACAAGTACAGAATAT CAGAGAGAAACAAGATACCATTTCGGCGACTAAATCATTAGAGCATATCAGGCCCGAGAATATCAAGAAGGGACCATTGA ATAATGCTTTGGATGTATTGAGTGGTCAGTCTGCCGGTGTGAACGTCACCACTAATGGGACTGACAGGCTCGCTATGCTG AATAGTATCCGTGTGCGTGGTACCACATCCATTATGGGTGGCAATGACCCGTTAGTAATTATTGACGGAGTGACATCTGA CATCGCTACGCTATCTACCATATATCCCGCAGACATCGAGAGTTTCACTATTTTGAAGAATGCTACCGAAACGGCAATGT ACGGTTCCCGTGGTGCTTCAGGTGTAATTGAGATTAAGACCAAGAAAGGAACGGGGCGAGGTTTCGAAATATCATATGAT GGCAACTACGGATTCGAGTCAATGTATAAACATCTGCAAATGCTCAACGGCCCGGAGTATATAGCTACAGCAGAGGCACT TGGATTAGATTACAATAATGGTGGCTACAACACCAATTTTCACGATGTAATTACTCGTACGGGCTTGATACATCAGCATC ACTTGGCTTTTAGCGGTGGTTCGGAAAACTCAAACTATCGAGCATCGTTCGGTTTTATGGATCATAATACAATTGTCAAA GTTAACGATTACCGAAATTTAGTGGTAAAACTTGATGCTACACAAAAGGCTTTCGATGGTCGCTTAGTTGGCGATTTTGG TGTATATGGCTACTCGTCAAAGATACACGACATTTTCGATACACGAATGCTGTTTTACTCGGCAGCTGCACAGAATCCTA CATATCCAGCAGGAACTGATGTTAATGGCAACTGGGTGAAGAACTCGGCTGCATCACACATCAACCACCCCGGAGCACTC CTCTATGAGAAAAATGACTCCGAAGAACGGAATTTCAATACACATTTGGGGCTGAAATTTAATATCCTTGACAATTTGAT ATTGTCGGCTTTCGGCTCTTATTCATATTCATCTACGGGAAATGCTCAATTTTGTCCTACATGGGTGTGGGCGCAAGGCA ATGTTTATCGTGGAGAGTTCAAGGGTGAAGACTACTTTACAAATGTGTCCCTCTCATATAACAATGCTTGGGGAGACTCA CACCTTGATGCTGTTGTTGGCGCAGAATATCTTAAACAGGTAAGGACTGGTTTATGGGTGCAGGCAAAAGGAATAACAAC AAATGATTTCTCCTATAATAACATCGGAGCAACATCATCGCGTCCTTTCGGTGGTACGAGCAGTAGCTATGAAGACCAGT CACTTGCTTCAATAATGGGTAGTGTCACATATAGTTACAAGGATAGATATTCTATTGCGGCAGCACTCCGTGGAGATGGC TCTTCAATGGTAAGCGATAACAATACTTTCGGATTCTTCCCATCAGTATCACTGGGTTGGGATGTAAAAAAAGAAGGCTT CCTCTCTGATACTGACTTTATAACAATGTTGAAACTAAGAACCGGATATGGTCGGTCAGGAAATCTTGGAGGTATAACAT CCTATACAACACTTAATACCGTAAAGGAGAATGGTATCGTATCCATCAACGGTGCACCTACCGTAACAATGGGAAGTATA CGCAACACGAATCCGGACCTTAAGTGGGAGACTCGTTCAACATTTAATATCGGTTTTGACTTAGGTATATGGGATAATCG GTTGATGCTTACCTCGGAATTATATTACTCAAAGACAACGGATATGCTCTATGAGTATGATGTTCCCGTTCCGACCTTTG CGTTCGATAAACTGATGGCAAATATCGGCTCGATGTCTAACCAGGGTGTCGAACTAGGAATCTCGGTAGTTCCCATTCAA CGAAAGGATATGGAGATGAATATCAACTTCAATATGTCCTACCAGAAGAATAAGTTACTTTCGCTTAGTGGAGAGTATAA TGGTATGCATATGACAGCTTCAGATATTACTCCGATTGGCTCGCTTTATGGTGCAGGTCAGAACGGTGGAGACAATAATG TAGTATATCAGATTGTAGGTCAGCCATTGGGGGTATTCTATCTACCTCACTGCAAAGGGCTTAAAGAAAATGAACTTGGT GGCTACAGTTACGATATTGAAGATTTGAATGATGATGGCGAGATTGATTTTAGCGATGGCGGAGACAGGTATATAGCAGG TCAGGCAACCCCCAAGGTAACTATTGGATCAAACATCAGTTTCCGTTACAAGTCCTTTGATATTGCCATGCAGATAAATG GTGCTTTCGGTCATAAGATATTCAATGGCACGGGCTTGGCTTATACCAATATGTCTATATTCCCTGACTACAATGTATTG AAGGGTGCTCCTGAAAAAAATATTATTGATCAGAATGTTTCAGACTATTGGTTGGAAAAAGGTGACTATGTAAATATTGA ACATATTACCATAGGCTACAATATTCCAATGAAATCCAAGGCTGTGAAGTCATTGCGTCTTTCGGCAGGCATTAGCAACC TTGCAACAATCACAGGCTATAGCGGTCTTACTCCAATGATAAACAGTTATGTAGTAAGCAACACTTTGGGCATTGACGAC AAACGCACCTATCCTTTATATCGTACCTATTCGTTAGGTCTTAGTATTCAATTCTAA
Upstream 100 bases:
>100_bases GAAATAGTACAGATTCCCAATCCCCCTCTTTATAATACATTGCGTATAAGATTTATTAACTGTCTGGTCTGGGGAATCTA CAGAGATTTAACGAATCAAG
Downstream 100 bases:
>100_bases CCGCTTACAGTTATGAAAAGATATATAAACATATTGATGGTTGCTTTGGCAACGATGATGACCTCTTGTCTTACTGAAGA CCCTAGAGATCAACTTTATG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 898; Mature: 897
Protein sequence:
>898_residues MGRVSLCLVIMFFICSAQKIDAQVQNIREKQDTISATKSLEHIRPENIKKGPLNNALDVLSGQSAGVNVTTNGTDRLAML NSIRVRGTTSIMGGNDPLVIIDGVTSDIATLSTIYPADIESFTILKNATETAMYGSRGASGVIEIKTKKGTGRGFEISYD GNYGFESMYKHLQMLNGPEYIATAEALGLDYNNGGYNTNFHDVITRTGLIHQHHLAFSGGSENSNYRASFGFMDHNTIVK VNDYRNLVVKLDATQKAFDGRLVGDFGVYGYSSKIHDIFDTRMLFYSAAAQNPTYPAGTDVNGNWVKNSAASHINHPGAL LYEKNDSEERNFNTHLGLKFNILDNLILSAFGSYSYSSTGNAQFCPTWVWAQGNVYRGEFKGEDYFTNVSLSYNNAWGDS HLDAVVGAEYLKQVRTGLWVQAKGITTNDFSYNNIGATSSRPFGGTSSSYEDQSLASIMGSVTYSYKDRYSIAAALRGDG SSMVSDNNTFGFFPSVSLGWDVKKEGFLSDTDFITMLKLRTGYGRSGNLGGITSYTTLNTVKENGIVSINGAPTVTMGSI RNTNPDLKWETRSTFNIGFDLGIWDNRLMLTSELYYSKTTDMLYEYDVPVPTFAFDKLMANIGSMSNQGVELGISVVPIQ RKDMEMNINFNMSYQKNKLLSLSGEYNGMHMTASDITPIGSLYGAGQNGGDNNVVYQIVGQPLGVFYLPHCKGLKENELG GYSYDIEDLNDDGEIDFSDGGDRYIAGQATPKVTIGSNISFRYKSFDIAMQINGAFGHKIFNGTGLAYTNMSIFPDYNVL KGAPEKNIIDQNVSDYWLEKGDYVNIEHITIGYNIPMKSKAVKSLRLSAGISNLATITGYSGLTPMINSYVVSNTLGIDD KRTYPLYRTYSLGLSIQF
Sequences:
>Translated_898_residues MGRVSLCLVIMFFICSAQKIDAQVQNIREKQDTISATKSLEHIRPENIKKGPLNNALDVLSGQSAGVNVTTNGTDRLAML NSIRVRGTTSIMGGNDPLVIIDGVTSDIATLSTIYPADIESFTILKNATETAMYGSRGASGVIEIKTKKGTGRGFEISYD GNYGFESMYKHLQMLNGPEYIATAEALGLDYNNGGYNTNFHDVITRTGLIHQHHLAFSGGSENSNYRASFGFMDHNTIVK VNDYRNLVVKLDATQKAFDGRLVGDFGVYGYSSKIHDIFDTRMLFYSAAAQNPTYPAGTDVNGNWVKNSAASHINHPGAL LYEKNDSEERNFNTHLGLKFNILDNLILSAFGSYSYSSTGNAQFCPTWVWAQGNVYRGEFKGEDYFTNVSLSYNNAWGDS HLDAVVGAEYLKQVRTGLWVQAKGITTNDFSYNNIGATSSRPFGGTSSSYEDQSLASIMGSVTYSYKDRYSIAAALRGDG SSMVSDNNTFGFFPSVSLGWDVKKEGFLSDTDFITMLKLRTGYGRSGNLGGITSYTTLNTVKENGIVSINGAPTVTMGSI RNTNPDLKWETRSTFNIGFDLGIWDNRLMLTSELYYSKTTDMLYEYDVPVPTFAFDKLMANIGSMSNQGVELGISVVPIQ RKDMEMNINFNMSYQKNKLLSLSGEYNGMHMTASDITPIGSLYGAGQNGGDNNVVYQIVGQPLGVFYLPHCKGLKENELG GYSYDIEDLNDDGEIDFSDGGDRYIAGQATPKVTIGSNISFRYKSFDIAMQINGAFGHKIFNGTGLAYTNMSIFPDYNVL KGAPEKNIIDQNVSDYWLEKGDYVNIEHITIGYNIPMKSKAVKSLRLSAGISNLATITGYSGLTPMINSYVVSNTLGIDD KRTYPLYRTYSLGLSIQF >Mature_897_residues GRVSLCLVIMFFICSAQKIDAQVQNIREKQDTISATKSLEHIRPENIKKGPLNNALDVLSGQSAGVNVTTNGTDRLAMLN SIRVRGTTSIMGGNDPLVIIDGVTSDIATLSTIYPADIESFTILKNATETAMYGSRGASGVIEIKTKKGTGRGFEISYDG NYGFESMYKHLQMLNGPEYIATAEALGLDYNNGGYNTNFHDVITRTGLIHQHHLAFSGGSENSNYRASFGFMDHNTIVKV NDYRNLVVKLDATQKAFDGRLVGDFGVYGYSSKIHDIFDTRMLFYSAAAQNPTYPAGTDVNGNWVKNSAASHINHPGALL YEKNDSEERNFNTHLGLKFNILDNLILSAFGSYSYSSTGNAQFCPTWVWAQGNVYRGEFKGEDYFTNVSLSYNNAWGDSH LDAVVGAEYLKQVRTGLWVQAKGITTNDFSYNNIGATSSRPFGGTSSSYEDQSLASIMGSVTYSYKDRYSIAAALRGDGS SMVSDNNTFGFFPSVSLGWDVKKEGFLSDTDFITMLKLRTGYGRSGNLGGITSYTTLNTVKENGIVSINGAPTVTMGSIR NTNPDLKWETRSTFNIGFDLGIWDNRLMLTSELYYSKTTDMLYEYDVPVPTFAFDKLMANIGSMSNQGVELGISVVPIQR KDMEMNINFNMSYQKNKLLSLSGEYNGMHMTASDITPIGSLYGAGQNGGDNNVVYQIVGQPLGVFYLPHCKGLKENELGG YSYDIEDLNDDGEIDFSDGGDRYIAGQATPKVTIGSNISFRYKSFDIAMQINGAFGHKIFNGTGLAYTNMSIFPDYNVLK GAPEKNIIDQNVSDYWLEKGDYVNIEHITIGYNIPMKSKAVKSLRLSAGISNLATITGYSGLTPMINSYVVSNTLGIDDK RTYPLYRTYSLGLSIQF
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 98644; Mature: 98512
Theoretical pI: Translated: 5.76; Mature: 5.76
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 2.9 %Met (Translated Protein) 3.3 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 2.8 %Met (Mature Protein) 3.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MGRVSLCLVIMFFICSAQKIDAQVQNIREKQDTISATKSLEHIRPENIKKGPLNNALDVL CCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHH SGQSAGVNVTTNGTDRLAMLNSIRVRGTTSIMGGNDPLVIIDGVTSDIATLSTIYPADIE CCCCCCEEEEECCCCCEEEEHEEEEEEEEEEECCCCCEEEECCCCCCHHHHHEECCCCCC SFTILKNATETAMYGSRGASGVIEIKTKKGTGRGFEISYDGNYGFESMYKHLQMLNGPEY EEEEECCCCHHHHCCCCCCCCEEEEEECCCCCCCEEEEECCCCCHHHHHHHHHHCCCCCC IATAEALGLDYNNGGYNTNFHDVITRTGLIHQHHLAFSGGSENSNYRASFGFMDHNTIVK EEEHHHHCCCCCCCCCCCCHHHHHHHCCCEEEEEEEEECCCCCCCEEEEEEEECCCEEEE VNDYRNLVVKLDATQKAFDGRLVGDFGVYGYSSKIHDIFDTRMLFYSAAAQNPTYPAGTD EECCCEEEEEEECCHHHHCCEEEECCCCCCCCCHHHHHHHHHHHEEEHHCCCCCCCCCCC VNGNWVKNSAASHINHPGALLYEKNDSEERNFNTHLGLKFNILDNLILSAFGSYSYSSTG CCCCEECCCHHHHCCCCCEEEEECCCCCCCCCCEECCEEEHHHHHHHHHHHCCCCCCCCC NAQFCPTWVWAQGNVYRGEFKGEDYFTNVSLSYNNAWGDSHLDAVVGAEYLKQVRTGLWV CCCCCCEEEEECCCEEECEECCCEEEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHCCEE QAKGITTNDFSYNNIGATSSRPFGGTSSSYEDQSLASIMGSVTYSYKDRYSIAAALRGDG EECCCEECCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHEEEEECCCEEEEEEEECCC SSMVSDNNTFGFFPSVSLGWDVKKEGFLSDTDFITMLKLRTGYGRSGNLGGITSYTTLNT CCEECCCCCEEECCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCCCCEEEEEEEEE VKENGIVSINGAPTVTMGSIRNTNPDLKWETRSTFNIGFDLGIWDNRLMLTSELYYSKTT CCCCCEEEECCCCEEEECCCCCCCCCEEEECCCEEEEEEEECCCCCEEEEEEEHHHCCCC DMLYEYDVPVPTFAFDKLMANIGSMSNQGVELGISVVPIQRKDMEMNINFNMSYQKNKLL CEEEEECCCCCHHHHHHHHHHHCCCCCCCEEEEEEEEEEECCCEEEEEEEEECCCCCEEE SLSGEYNGMHMTASDITPIGSLYGAGQNGGDNNVVYQIVGQPLGVFYLPHCKGLKENELG EECCCCCCEEEECCCCCCCHHHHCCCCCCCCCCEEEEEECCCCCEEECCCCCCCCCCCCC GYSYDIEDLNDDGEIDFSDGGDRYIAGQATPKVTIGSNISFRYKSFDIAMQINGAFGHKI CEEEECCCCCCCCCEEECCCCCEEEECCCCCEEEECCCEEEEEEEEEEEEEECCCCCCEE FNGTGLAYTNMSIFPDYNVLKGAPEKNIIDQNVSDYWLEKGDYVNIEHITIGYNIPMKSK ECCCCEEEECEEECCCCHHHCCCCCCCCCCCCCHHHHHCCCCEEEEEEEEEEECCCCCHH AVKSLRLSAGISNLATITGYSGLTPMINSYVVSNTLGIDDKRTYPLYRTYSLGLSIQF HHHHHHHHCCCCHHEEECCCCCCCHHHHHEEEECCCCCCCCCCCCEEEEEEECEEEEC >Mature Secondary Structure GRVSLCLVIMFFICSAQKIDAQVQNIREKQDTISATKSLEHIRPENIKKGPLNNALDVL CHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHH SGQSAGVNVTTNGTDRLAMLNSIRVRGTTSIMGGNDPLVIIDGVTSDIATLSTIYPADIE CCCCCCEEEEECCCCCEEEEHEEEEEEEEEEECCCCCEEEECCCCCCHHHHHEECCCCCC SFTILKNATETAMYGSRGASGVIEIKTKKGTGRGFEISYDGNYGFESMYKHLQMLNGPEY EEEEECCCCHHHHCCCCCCCCEEEEEECCCCCCCEEEEECCCCCHHHHHHHHHHCCCCCC IATAEALGLDYNNGGYNTNFHDVITRTGLIHQHHLAFSGGSENSNYRASFGFMDHNTIVK EEEHHHHCCCCCCCCCCCCHHHHHHHCCCEEEEEEEEECCCCCCCEEEEEEEECCCEEEE VNDYRNLVVKLDATQKAFDGRLVGDFGVYGYSSKIHDIFDTRMLFYSAAAQNPTYPAGTD EECCCEEEEEEECCHHHHCCEEEECCCCCCCCCHHHHHHHHHHHEEEHHCCCCCCCCCCC VNGNWVKNSAASHINHPGALLYEKNDSEERNFNTHLGLKFNILDNLILSAFGSYSYSSTG CCCCEECCCHHHHCCCCCEEEEECCCCCCCCCCEECCEEEHHHHHHHHHHHCCCCCCCCC NAQFCPTWVWAQGNVYRGEFKGEDYFTNVSLSYNNAWGDSHLDAVVGAEYLKQVRTGLWV CCCCCCEEEEECCCEEECEECCCEEEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHCCEE QAKGITTNDFSYNNIGATSSRPFGGTSSSYEDQSLASIMGSVTYSYKDRYSIAAALRGDG EECCCEECCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHEEEEECCCEEEEEEEECCC SSMVSDNNTFGFFPSVSLGWDVKKEGFLSDTDFITMLKLRTGYGRSGNLGGITSYTTLNT CCEECCCCCEEECCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCCCCEEEEEEEEE VKENGIVSINGAPTVTMGSIRNTNPDLKWETRSTFNIGFDLGIWDNRLMLTSELYYSKTT CCCCCEEEECCCCEEEECCCCCCCCCEEEECCCEEEEEEEECCCCCEEEEEEEHHHCCCC DMLYEYDVPVPTFAFDKLMANIGSMSNQGVELGISVVPIQRKDMEMNINFNMSYQKNKLL CEEEEECCCCCHHHHHHHHHHHCCCCCCCEEEEEEEEEEECCCEEEEEEEEECCCCCEEE SLSGEYNGMHMTASDITPIGSLYGAGQNGGDNNVVYQIVGQPLGVFYLPHCKGLKENELG EECCCCCCEEEECCCCCCCHHHHCCCCCCCCCCEEEEEECCCCCEEECCCCCCCCCCCCC GYSYDIEDLNDDGEIDFSDGGDRYIAGQATPKVTIGSNISFRYKSFDIAMQINGAFGHKI CEEEECCCCCCCCCEEECCCCCEEEECCCCCEEEECCCEEEEEEEEEEEEEECCCCCCEE FNGTGLAYTNMSIFPDYNVLKGAPEKNIIDQNVSDYWLEKGDYVNIEHITIGYNIPMKSK ECCCCEEEECEEECCCCHHHCCCCCCCCCCCCCHHHHHCCCCEEEEEEEEEEECCCCCHH AVKSLRLSAGISNLATITGYSGLTPMINSYVVSNTLGIDDKRTYPLYRTYSLGLSIQF HHHHHHHHCCCCHHEEECCCCCCCHHHHHEEEECCCCCCCCCCCCEEEEEEECEEEEC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA