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The map label for this gene is ychK [C]

Identifier: 29346426

GI number: 29346426

Start: 1269131

End: 1269913

Strand: Reverse

Name: ychK [C]

Synonym: BT_1016

Alternate gene names: 29346426

Gene position: 1269913-1269131 (Counterclockwise)

Preceding gene: 29346427

Following gene: 29346424

Centisome position: 20.28

GC content: 43.04

Gene sequence:

>783_bases
ATGGATAAGCAAAAAGTAGCATTAGTCCTTTCTATGGGTGGCGCACGTGGTATTGCGCATATTGGAGTCATTGAAGAATT
GTTACGTCATAATTTCGAGATAACTTCTATTGCCGGAAGCTCGATGGGAGCGATGGTAGGCGCAATGTATGCTTCGGGAA
AACTGGAGGAATGTAAAGAATGGCTCTATAGCTGGGATAAACGTAAGATGTGGGAACTGGCGGATCTGACATTAAGTCGG
GACGGCTTGGTGAAGGGGGATCGTTTTATCAAAGAACTGAAGCAGATTATTCCCGTTATGAATATTGAAGATTTGCCTAT
ACCATACGTGGCAATGGCTACTGATATTGTTTGCGATCAGGAAGTGAGGTTCGATAGTGGTAATTTGTATGATGCTATTC
GTGCTACTATTTCTATACCGATGCTCTTCCGGCCTTTACGGAAAGATGGTATGGTTCTGATTGACGGAGGAATACTGAAT
CCCCTTCCGCTGAATCAGGTGCATCGTACGGAAGGGGATATTCTGATAGCAGTCGATGTCAATGCTCCGATTGATTGCGG
TAAGAAAAAGAAAATGAGTCCTTATAACTTGTTGACAGAATCTTCAAGAATGATGATGCAGCAAATTACCCGTTATCAGG
TAGAACGTTGTCAGCCGGATATCTTAATTCAGATGTCCGGCAATGCTTATGATATGCTGGAGTTCCATCATGCAGCTTCT
ATTGTGGAGACGGGAATAGAGATTACCCGGGATGCGTTGAATACAGAACTTTATTCCGTATAA

Upstream 100 bases:

>100_bases
CTTTTTGCTTCATTTACTTCTAGAATAATAGAGCTGGTCGGACATCTTTTATTGCAGAAAATGTGTTATATTGTGGACAG
CTAATAAAAACGTATATTAT

Downstream 100 bases:

>100_bases
ATCATTTTTTTCGTCATACCTCCGTCAATGGTTATATTCTCACCGTTGATAAAATCATTCTCATCCCGGCAGAGAAATAA
ACACATACGGGCAATATCTT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 260; Mature: 260

Protein sequence:

>260_residues
MDKQKVALVLSMGGARGIAHIGVIEELLRHNFEITSIAGSSMGAMVGAMYASGKLEECKEWLYSWDKRKMWELADLTLSR
DGLVKGDRFIKELKQIIPVMNIEDLPIPYVAMATDIVCDQEVRFDSGNLYDAIRATISIPMLFRPLRKDGMVLIDGGILN
PLPLNQVHRTEGDILIAVDVNAPIDCGKKKKMSPYNLLTESSRMMMQQITRYQVERCQPDILIQMSGNAYDMLEFHHAAS
IVETGIEITRDALNTELYSV

Sequences:

>Translated_260_residues
MDKQKVALVLSMGGARGIAHIGVIEELLRHNFEITSIAGSSMGAMVGAMYASGKLEECKEWLYSWDKRKMWELADLTLSR
DGLVKGDRFIKELKQIIPVMNIEDLPIPYVAMATDIVCDQEVRFDSGNLYDAIRATISIPMLFRPLRKDGMVLIDGGILN
PLPLNQVHRTEGDILIAVDVNAPIDCGKKKKMSPYNLLTESSRMMMQQITRYQVERCQPDILIQMSGNAYDMLEFHHAAS
IVETGIEITRDALNTELYSV
>Mature_260_residues
MDKQKVALVLSMGGARGIAHIGVIEELLRHNFEITSIAGSSMGAMVGAMYASGKLEECKEWLYSWDKRKMWELADLTLSR
DGLVKGDRFIKELKQIIPVMNIEDLPIPYVAMATDIVCDQEVRFDSGNLYDAIRATISIPMLFRPLRKDGMVLIDGGILN
PLPLNQVHRTEGDILIAVDVNAPIDCGKKKKMSPYNLLTESSRMMMQQITRYQVERCQPDILIQMSGNAYDMLEFHHAAS
IVETGIEITRDALNTELYSV

Specific function: Unknown

COG id: COG1752

COG function: function code R; Predicted esterase of the alpha-beta hydrolase superfamily

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 patatin domain [H]

Homologues:

Organism=Homo sapiens, GI260656041, Length=184, Percent_Identity=32.0652173913043, Blast_Score=97, Evalue=2e-20,
Organism=Homo sapiens, GI116256487, Length=184, Percent_Identity=32.0652173913043, Blast_Score=97, Evalue=2e-20,
Organism=Homo sapiens, GI260656037, Length=184, Percent_Identity=32.0652173913043, Blast_Score=97, Evalue=2e-20,
Organism=Homo sapiens, GI260656039, Length=184, Percent_Identity=32.0652173913043, Blast_Score=97, Evalue=2e-20,
Organism=Homo sapiens, GI260656043, Length=184, Percent_Identity=32.0652173913043, Blast_Score=97, Evalue=2e-20,
Organism=Homo sapiens, GI148727335, Length=184, Percent_Identity=33.1521739130435, Blast_Score=93, Evalue=2e-19,
Organism=Homo sapiens, GI148727290, Length=184, Percent_Identity=33.1521739130435, Blast_Score=93, Evalue=2e-19,
Organism=Escherichia coli, GI226510936, Length=282, Percent_Identity=30.4964539007092, Blast_Score=143, Evalue=1e-35,
Organism=Caenorhabditis elegans, GI71997289, Length=166, Percent_Identity=27.710843373494, Blast_Score=65, Evalue=2e-11,
Organism=Caenorhabditis elegans, GI71997299, Length=166, Percent_Identity=27.710843373494, Blast_Score=65, Evalue=3e-11,
Organism=Saccharomyces cerevisiae, GI6323581, Length=194, Percent_Identity=29.8969072164948, Blast_Score=89, Evalue=9e-19,
Organism=Drosophila melanogaster, GI28571388, Length=190, Percent_Identity=32.6315789473684, Blast_Score=86, Evalue=2e-17,
Organism=Drosophila melanogaster, GI281376913, Length=191, Percent_Identity=31.9371727748691, Blast_Score=83, Evalue=2e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR016035
- InterPro:   IPR001423
- InterPro:   IPR002641 [H]

Pfam domain/function: PF01734 Patatin [H]

EC number: NA

Molecular weight: Translated: 29196; Mature: 29196

Theoretical pI: Translated: 5.18; Mature: 5.18

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
6.2 %Met     (Translated Protein)
7.7 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
6.2 %Met     (Mature Protein)
7.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDKQKVALVLSMGGARGIAHIGVIEELLRHNFEITSIAGSSMGAMVGAMYASGKLEECKE
CCCCEEEEEEEECCCCCHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHCCCCHHHHHH
WLYSWDKRKMWELADLTLSRDGLVKGDRFIKELKQIIPVMNIEDLPIPYVAMATDIVCDQ
HHHHHHHHHHHHHHHHEECCCCCCCHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHCCC
EVRFDSGNLYDAIRATISIPMLFRPLRKDGMVLIDGGILNPLPLNQVHRTEGDILIAVDV
CEECCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCHHHCCCCCEEEEEEC
NAPIDCGKKKKMSPYNLLTESSRMMMQQITRYQVERCQPDILIQMSGNAYDMLEFHHAAS
CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCEEHHHHHHHHHH
IVETGIEITRDALNTELYSV
HHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MDKQKVALVLSMGGARGIAHIGVIEELLRHNFEITSIAGSSMGAMVGAMYASGKLEECKE
CCCCEEEEEEEECCCCCHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHCCCCHHHHHH
WLYSWDKRKMWELADLTLSRDGLVKGDRFIKELKQIIPVMNIEDLPIPYVAMATDIVCDQ
HHHHHHHHHHHHHHHHEECCCCCCCHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHCCC
EVRFDSGNLYDAIRATISIPMLFRPLRKDGMVLIDGGILNPLPLNQVHRTEGDILIAVDV
CEECCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCHHHCCCCCEEEEEEC
NAPIDCGKKKKMSPYNLLTESSRMMMQQITRYQVERCQPDILIQMSGNAYDMLEFHHAAS
CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCEEHHHHHHHHHH
IVETGIEITRDALNTELYSV
HHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9634230; 12218036 [H]