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The map label for this gene is yjiK [H]

Identifier: 29144778

GI number: 29144778

Start: 4687270

End: 4688115

Strand: Direct

Name: yjiK [H]

Synonym: t4541

Alternate gene names: 29144778

Gene position: 4687270-4688115 (Clockwise)

Preceding gene: 29144777

Following gene: 29144782

Centisome position: 97.82

GC content: 60.52

Gene sequence:

>846_bases
ATGTTCAGATATTTATGTAACCAGAAAGCTGCACTGCTGACCGCCATTCTCCTGATGGCGGCCGGCGTGCTCACCCTGTG
TTTCCCGGAGTCCTGGTACCCGCAGGAAACAGAATGGCAGCTCACGGCAGAAAAAGAAATTACCGGGATACACGGCGGCC
TCTCCGGCCTGACATGGAACCCGGACAGCAGAACGCTGTTTGCCGTGACCGACCACCCCTCCTCGGTGGTGGAGCTGGAC
ACGGAAGGGAACGTGCTGCGGGTGATACCGTCAGACGGCGACCACGATTTTGAGGCCATCGAATACCTCGGCGGGAACCG
CTATGCCCTGTCCCGGGAGCGGGAGCGGACGCTCACCACCCACTGCATTGACAGCAGCACGACCGTCCTCCCGCCGGCAA
CATACAGCCTGACGCTGGATGTGAACAGGCACAGCGACAATGCCGGTTTTGAAGGCCTTGCCTGGGGACGGGGAGAGCAT
GCCCTGATGGTGGCGCAGGAGAAAAAACCGCTGCGGCTTTACGTGACGGACCGGAGCCCTGATGCGCTGTCGGTGAGTGA
CTCGCTGACACACCGGGCGTCCCTGCCATGGTTCCTGAAGGATATCTCCGGTCTGCATTATGACCGGAACAACGGGCTCC
TGTATGTACTTTCCCATGAATCTGCCGTGGTCGTGGTGTCGGATCTGGACGGCGGGAGGAAGGTGATGTCGCTGCGCCGG
GGACACTGTGGCCTGCGAAGGGATATCCCGCAGGCGGAGGGGATAGCCTCAGATGACCGGGACACGCTGTGGATAGTCAG
TGAACCGAATCTGTTTTACCGCTTCACCCGCACGGCTTCGTCCTGA

Upstream 100 bases:

>100_bases
TTCTGACCGGCGTCTTGGCCATGCTCTGGCTTATCTGCCGTGGGGCATGATGTGAAGTCCGGTCTCCCCTGTAACAGAAA
ACATAACTTTCACCACCACG

Downstream 100 bases:

>100_bases
GGATGAGGCGGCGCGGAAGGTGAAGTAAAATTCGCCGCGTGAAGCCGACCGGTGTTGGTGCCGGTGTCAGCGGTGGATTC
TGACAGTGGAAAGATGATGA

Product: outer membrane protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 281; Mature: 281

Protein sequence:

>281_residues
MFRYLCNQKAALLTAILLMAAGVLTLCFPESWYPQETEWQLTAEKEITGIHGGLSGLTWNPDSRTLFAVTDHPSSVVELD
TEGNVLRVIPSDGDHDFEAIEYLGGNRYALSRERERTLTTHCIDSSTTVLPPATYSLTLDVNRHSDNAGFEGLAWGRGEH
ALMVAQEKKPLRLYVTDRSPDALSVSDSLTHRASLPWFLKDISGLHYDRNNGLLYVLSHESAVVVVSDLDGGRKVMSLRR
GHCGLRRDIPQAEGIASDDRDTLWIVSEPNLFYRFTRTASS

Sequences:

>Translated_281_residues
MFRYLCNQKAALLTAILLMAAGVLTLCFPESWYPQETEWQLTAEKEITGIHGGLSGLTWNPDSRTLFAVTDHPSSVVELD
TEGNVLRVIPSDGDHDFEAIEYLGGNRYALSRERERTLTTHCIDSSTTVLPPATYSLTLDVNRHSDNAGFEGLAWGRGEH
ALMVAQEKKPLRLYVTDRSPDALSVSDSLTHRASLPWFLKDISGLHYDRNNGLLYVLSHESAVVVVSDLDGGRKVMSLRR
GHCGLRRDIPQAEGIASDDRDTLWIVSEPNLFYRFTRTASS
>Mature_281_residues
MFRYLCNQKAALLTAILLMAAGVLTLCFPESWYPQETEWQLTAEKEITGIHGGLSGLTWNPDSRTLFAVTDHPSSVVELD
TEGNVLRVIPSDGDHDFEAIEYLGGNRYALSRERERTLTTHCIDSSTTVLPPATYSLTLDVNRHSDNAGFEGLAWGRGEH
ALMVAQEKKPLRLYVTDRSPDALSVSDSLTHRASLPWFLKDISGLHYDRNNGLLYVLSHESAVVVVSDLDGGRKVMSLRR
GHCGLRRDIPQAEGIASDDRDTLWIVSEPNLFYRFTRTASS

Specific function: Unknown

COG id: COG3204

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cell membrane; Single-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the yjiK family [H]

Homologues:

Organism=Escherichia coli, GI145693216, Length=243, Percent_Identity=37.037037037037, Blast_Score=153, Evalue=9e-39,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011042
- InterPro:   IPR009722 [H]

Pfam domain/function: PF06977 SdiA-regulated [H]

EC number: NA

Molecular weight: Translated: 31322; Mature: 31322

Theoretical pI: Translated: 5.55; Mature: 5.55

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFRYLCNQKAALLTAILLMAAGVLTLCFPESWYPQETEWQLTAEKEITGIHGGLSGLTWN
CCCHHHCCHHHHHHHHHHHHHHHHEEECCCCCCCCCCCEEEEECCEEEEECCCCCCEEEC
PDSRTLFAVTDHPSSVVELDTEGNVLRVIPSDGDHDFEAIEYLGGNRYALSRERERTLTT
CCCCEEEEEECCCCEEEEECCCCCEEEEECCCCCCCHHHHHHCCCCEEEECCCHHHEEEE
HCIDSSTTVLPPATYSLTLDVNRHSDNAGFEGLAWGRGEHALMVAQEKKPLRLYVTDRSP
EEECCCCEEECCCEEEEEEEEECCCCCCCCCCEEECCCCEEEEEEECCCCEEEEEECCCC
DALSVSDSLTHRASLPWFLKDISGLHYDRNNGLLYVLSHESAVVVVSDLDGGRKVMSLRR
CEEECCCCCHHHCCCCHHHHHHCCCEEECCCCEEEEEECCCEEEEEEECCCCHHHHHHHH
GHCGLRRDIPQAEGIASDDRDTLWIVSEPNLFYRFTRTASS
CCCCCCCCCCCCCCCCCCCCCEEEEEECCCEEEEEEECCCC
>Mature Secondary Structure
MFRYLCNQKAALLTAILLMAAGVLTLCFPESWYPQETEWQLTAEKEITGIHGGLSGLTWN
CCCHHHCCHHHHHHHHHHHHHHHHEEECCCCCCCCCCCEEEEECCEEEEECCCCCCEEEC
PDSRTLFAVTDHPSSVVELDTEGNVLRVIPSDGDHDFEAIEYLGGNRYALSRERERTLTT
CCCCEEEEEECCCCEEEEECCCCCEEEEECCCCCCCHHHHHHCCCCEEEECCCHHHEEEE
HCIDSSTTVLPPATYSLTLDVNRHSDNAGFEGLAWGRGEHALMVAQEKKPLRLYVTDRSP
EEECCCCEEECCCEEEEEEEEECCCCCCCCCCEEECCCCEEEEEEECCCCEEEEEECCCC
DALSVSDSLTHRASLPWFLKDISGLHYDRNNGLLYVLSHESAVVVVSDLDGGRKVMSLRR
CEEECCCCCHHHCCCCHHHHHHCCCEEECCCCEEEEEECCCEEEEEEECCCCHHHHHHHH
GHCGLRRDIPQAEGIASDDRDTLWIVSEPNLFYRFTRTASS
CCCCCCCCCCCCCCCCCCCCCEEEEEECCCEEEEEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]