| Definition | Salmonella enterica subsp. enterica serovar Typhi str. Ty2 chromosome, complete genome. |
|---|---|
| Accession | NC_004631 |
| Length | 4,791,961 |
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The map label for this gene is sefC [H]
Identifier: 29144775
GI number: 29144775
Start: 4681221
End: 4683773
Strand: Direct
Name: sefC [H]
Synonym: t4536
Alternate gene names: 29144775
Gene position: 4681221-4683773 (Clockwise)
Preceding gene: 29144774
Following gene: 29144776
Centisome position: 97.69
GC content: 35.92
Gene sequence:
>2553_bases ATGAAGAAAACCACAATTACTCTATTTGTTTTAACCAGTGTATTTCACTCTGGAAATGTTTTCTCCAGACAATATAATTT CGACTATGGAAGTTTGAGTCTTCCTCCCGGTGAGAATGCATCTTTTCTAAGTGTTGAAACGCTTCCTGGTAATTATGTTG TTGATGTATATTTGAATAATCAGTTAAAAGAAACTACTGAGTTGTATTTCAAATCAATGACTCAGACTCTAGAACCATGC TTAACAAAAGAAAAACTTATAAAGTATGGGATCGCCATCCAGGAGCTTCATGGGTTGCAGTTTGATAATGAACAATGCGT TCTCTTAGAGCATTCTCCTCTTAAATATACTTATAACGCGGCTAACCAAAGTTTGCTTTTAAATGCACCATCTAAAATTC TATCTCCAATAGACAGTGAAATTGCTGATGAAAATATCTGGGATGATGGCATTAACGCTTTTCTTTTAAATTACAGAGCT AATTATTTGCATTCTAAGGTTGGAGGAGAAGATTCATACTTTGGTCAAATTCAACTTGGTTTTAATTTTGGTCCCTGGCG GCTAAGGAATCTATCATCTTGGCAAAACTTGTCAAGCGAAAAAAAATTTGAATCAGCATATATTTATGCTGAGCGAGGTT TAAAAAAAATAAAGAGCAAACTAACAGTTGGGGACAAATATACCAGTGCAGATTTATTCGATAGCGTACCATTTAGAGGC TTTTCTTTAAATAAAGATGAAAGTATGATACCTTTCTCACAGAGAACATATTATCCAACAATACGTGGTATTGCGAAAAC CAATGCGACTGTAGAAGTAAGACAAAATGGATACTTGATATATTCTACTTCAGTCCCCCCCGGGCAATTCGAGATAGGTA GAGAACAAATTGCTGATCTTGGTGTTGGTGTTGGTGTTGGTGTTGGTGTTGGTGTTGGTGTTGGTGTTGGTGTTGGTGTT GGTGTTGGTGTTGGTGTTGGTGTTGGTGTTGGTGTTGGTGTTGGTGTTGGTGTTGGTGTTGGGGTTCTTGATGTTAGCAT TTATGAAAAAAATGGGCAGGTCCAAAACTATACAGTGCCATATTCAACTCCTGTATTATCTTTGCCTGATGGATATTCTA AATATAGTGTAACTATTGGTAGATACAGGGAGGTTAACAATGATTATATCGATCCTGTTTTTTTTGAAGGGACTTATATA TATGGTCTGCCTTATGGGTTTACTTTATTTGGTGGAGTGCAATGGGCAAATATTTATAATTCATACGCCATAGGCGCAAG TAAAGATATTGGTGAGTATGGTGCTCTGTCTTTTGACTGGAAAACATCTGTTTCGAAGACTGATACATCCAATGAAAATG GTCATGCATATGGGATTAGATACAATAAAAATATCGCTCAGACAAACACCGAAGTATCTTTGGCTAGTCATTACTATTAT TCGAAAAATTATAGAACTTTTTCTGAAGCAATTCATAGTAGCGAGCATGATGAATTTTACGATAAAAATAAGAAATCAAC AACCTCTATGTTATTAAGTCAGGCATTAGGATCTCTGGGTTCTGTTAACTTAAGCTACAATTATGATAAATATTGGAAAC ATGAAGGTAAAAAATCAATAATTGCTAGTTATGGGAAGAATTTAAATGGTGTTTCGTTATCGCTTTCATATACGAAAAGT ACATCAAAGATTAGTGAAGAAAATGAAGATTTATTCAGTTTTCTACTCAGTGTACCTTTGCAAAAACTTACAAATCATGA AATGTATGCTACATATCAAAACTCATCCTCTTCAAAGCATGATATGAATCATGATTTAGGTATTACTGGTGTGGCATTTG ATAGCCAATTGACATGGCAAGCAAGAGGGCAAATAGAAGATAAATCGAAAAATCAAAAGGCTACATTTTTAAATGCTTCT TGGCGAGGTACTTATGGGGAGATCGGAGCAAACTATAGTCATAATGAAATAAATCGTGATATTGGGATGAATGTTTCTGG TGGGGTGATTGCTCATTCATCAGGAATTACGTTTGGTCAGAGTATATCGGATACTGCTGCACTGGTCGAGGCTAAAGGTG TAAGTGGGGCAAAAGTTCTGGGCCTACCAGGTGTTAGAACCGATTTTAGAGGCTATACAATATCCAGTTATCTTACTCCA TATATGAATAACTTCATATCTATAGATCCAACAACGTTACCAATAAATACGGATATTAGGCAAACTGATATTCAAGTAGT TCCTACCGAAGGTGCTATTGTAAAAGCTGTATATAAAACAAGCGTGGGTACTAATGCATTAATTAGAATTACAAGAACAA ATGGAAAGCCACTAGCTCTTAGCACAGTTCTTTCACTTAAGAATAATGATGGAGTAATCCAATCAACATCTATTGTTGGC GAAGATGGTCAGGCATATGTATCTGGATTGTCAGGAGTGCAAAAATTAATCGCTTCGTGGGGGAATAAGCCCTCCGATAC TTGTACAGTTTTTTACTCTCTTCCCGATAAAAACAAAGGTCAGATTAGCTTTTTAAATGGAGTGTGCAAATGA
Upstream 100 bases:
>100_bases GCTCAATTACCTGGTGGAGTACATAGTAAAATAACTTTGACTATTTTGGATGATAACGGCGCTGAAATTATAAGAGATTA TTATTTTAAGGTGTAAACAA
Downstream 100 bases:
>100_bases ATCAGTATAATTCGTCAATACCTAAGTTCATTGTCTCTGTTTTTCTGATTGTTACTGGTTTTTTCAGCTCAACTATTAAA GCACAAGAACTTAAATTAAT
Product: outer membrane fimbrial usher protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 850; Mature: 850
Protein sequence:
>850_residues MKKTTITLFVLTSVFHSGNVFSRQYNFDYGSLSLPPGENASFLSVETLPGNYVVDVYLNNQLKETTELYFKSMTQTLEPC LTKEKLIKYGIAIQELHGLQFDNEQCVLLEHSPLKYTYNAANQSLLLNAPSKILSPIDSEIADENIWDDGINAFLLNYRA NYLHSKVGGEDSYFGQIQLGFNFGPWRLRNLSSWQNLSSEKKFESAYIYAERGLKKIKSKLTVGDKYTSADLFDSVPFRG FSLNKDESMIPFSQRTYYPTIRGIAKTNATVEVRQNGYLIYSTSVPPGQFEIGREQIADLGVGVGVGVGVGVGVGVGVGV GVGVGVGVGVGVGVGVGVGVGVLDVSIYEKNGQVQNYTVPYSTPVLSLPDGYSKYSVTIGRYREVNNDYIDPVFFEGTYI YGLPYGFTLFGGVQWANIYNSYAIGASKDIGEYGALSFDWKTSVSKTDTSNENGHAYGIRYNKNIAQTNTEVSLASHYYY SKNYRTFSEAIHSSEHDEFYDKNKKSTTSMLLSQALGSLGSVNLSYNYDKYWKHEGKKSIIASYGKNLNGVSLSLSYTKS TSKISEENEDLFSFLLSVPLQKLTNHEMYATYQNSSSSKHDMNHDLGITGVAFDSQLTWQARGQIEDKSKNQKATFLNAS WRGTYGEIGANYSHNEINRDIGMNVSGGVIAHSSGITFGQSISDTAALVEAKGVSGAKVLGLPGVRTDFRGYTISSYLTP YMNNFISIDPTTLPINTDIRQTDIQVVPTEGAIVKAVYKTSVGTNALIRITRTNGKPLALSTVLSLKNNDGVIQSTSIVG EDGQAYVSGLSGVQKLIASWGNKPSDTCTVFYSLPDKNKGQISFLNGVCK
Sequences:
>Translated_850_residues MKKTTITLFVLTSVFHSGNVFSRQYNFDYGSLSLPPGENASFLSVETLPGNYVVDVYLNNQLKETTELYFKSMTQTLEPC LTKEKLIKYGIAIQELHGLQFDNEQCVLLEHSPLKYTYNAANQSLLLNAPSKILSPIDSEIADENIWDDGINAFLLNYRA NYLHSKVGGEDSYFGQIQLGFNFGPWRLRNLSSWQNLSSEKKFESAYIYAERGLKKIKSKLTVGDKYTSADLFDSVPFRG FSLNKDESMIPFSQRTYYPTIRGIAKTNATVEVRQNGYLIYSTSVPPGQFEIGREQIADLGVGVGVGVGVGVGVGVGVGV GVGVGVGVGVGVGVGVGVGVGVLDVSIYEKNGQVQNYTVPYSTPVLSLPDGYSKYSVTIGRYREVNNDYIDPVFFEGTYI YGLPYGFTLFGGVQWANIYNSYAIGASKDIGEYGALSFDWKTSVSKTDTSNENGHAYGIRYNKNIAQTNTEVSLASHYYY SKNYRTFSEAIHSSEHDEFYDKNKKSTTSMLLSQALGSLGSVNLSYNYDKYWKHEGKKSIIASYGKNLNGVSLSLSYTKS TSKISEENEDLFSFLLSVPLQKLTNHEMYATYQNSSSSKHDMNHDLGITGVAFDSQLTWQARGQIEDKSKNQKATFLNAS WRGTYGEIGANYSHNEINRDIGMNVSGGVIAHSSGITFGQSISDTAALVEAKGVSGAKVLGLPGVRTDFRGYTISSYLTP YMNNFISIDPTTLPINTDIRQTDIQVVPTEGAIVKAVYKTSVGTNALIRITRTNGKPLALSTVLSLKNNDGVIQSTSIVG EDGQAYVSGLSGVQKLIASWGNKPSDTCTVFYSLPDKNKGQISFLNGVCK >Mature_850_residues MKKTTITLFVLTSVFHSGNVFSRQYNFDYGSLSLPPGENASFLSVETLPGNYVVDVYLNNQLKETTELYFKSMTQTLEPC LTKEKLIKYGIAIQELHGLQFDNEQCVLLEHSPLKYTYNAANQSLLLNAPSKILSPIDSEIADENIWDDGINAFLLNYRA NYLHSKVGGEDSYFGQIQLGFNFGPWRLRNLSSWQNLSSEKKFESAYIYAERGLKKIKSKLTVGDKYTSADLFDSVPFRG FSLNKDESMIPFSQRTYYPTIRGIAKTNATVEVRQNGYLIYSTSVPPGQFEIGREQIADLGVGVGVGVGVGVGVGVGVGV GVGVGVGVGVGVGVGVGVGVGVLDVSIYEKNGQVQNYTVPYSTPVLSLPDGYSKYSVTIGRYREVNNDYIDPVFFEGTYI YGLPYGFTLFGGVQWANIYNSYAIGASKDIGEYGALSFDWKTSVSKTDTSNENGHAYGIRYNKNIAQTNTEVSLASHYYY SKNYRTFSEAIHSSEHDEFYDKNKKSTTSMLLSQALGSLGSVNLSYNYDKYWKHEGKKSIIASYGKNLNGVSLSLSYTKS TSKISEENEDLFSFLLSVPLQKLTNHEMYATYQNSSSSKHDMNHDLGITGVAFDSQLTWQARGQIEDKSKNQKATFLNAS WRGTYGEIGANYSHNEINRDIGMNVSGGVIAHSSGITFGQSISDTAALVEAKGVSGAKVLGLPGVRTDFRGYTISSYLTP YMNNFISIDPTTLPINTDIRQTDIQVVPTEGAIVKAVYKTSVGTNALIRITRTNGKPLALSTVLSLKNNDGVIQSTSIVG EDGQAYVSGLSGVQKLIASWGNKPSDTCTVFYSLPDKNKGQISFLNGVCK
Specific function: Involved in the export and assembly of the sefA fimbrial subunit [H]
COG id: COG3188
COG function: function code NU; P pilus assembly protein, porin PapC
Gene ontology:
Cell location: Cell outer membrane; Multi-pass membrane protein [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the fimbrial export usher family [H]
Homologues:
Organism=Escherichia coli, GI1790772, Length=855, Percent_Identity=30.6432748538012, Blast_Score=394, Evalue=1e-110, Organism=Escherichia coli, GI1786744, Length=848, Percent_Identity=30.188679245283, Blast_Score=365, Evalue=1e-102, Organism=Escherichia coli, GI1787172, Length=852, Percent_Identity=30.6338028169014, Blast_Score=362, Evalue=1e-101, Organism=Escherichia coli, GI1789533, Length=830, Percent_Identity=31.9277108433735, Blast_Score=357, Evalue=2e-99, Organism=Escherichia coli, GI1788427, Length=801, Percent_Identity=27.7153558052434, Blast_Score=272, Evalue=5e-74, Organism=Escherichia coli, GI1786332, Length=876, Percent_Identity=26.027397260274, Blast_Score=240, Evalue=2e-64, Organism=Escherichia coli, GI87081778, Length=816, Percent_Identity=24.2647058823529, Blast_Score=172, Evalue=1e-43, Organism=Escherichia coli, GI1789610, Length=793, Percent_Identity=22.9508196721311, Blast_Score=121, Evalue=2e-28,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000015 [H]
Pfam domain/function: PF00577 Usher [H]
EC number: NA
Molecular weight: Translated: 93155; Mature: 93155
Theoretical pI: Translated: 7.04; Mature: 7.04
Prosite motif: PS00101 HEXAPEP_TRANSFERASES
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 0.9 %Met (Translated Protein) 1.4 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 0.9 %Met (Mature Protein) 1.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKKTTITLFVLTSVFHSGNVFSRQYNFDYGSLSLPPGENASFLSVETLPGNYVVDVYLNN CCCEEEEEEEEHHHHHCCCEEEEEECCCCCCEECCCCCCCCEEEEEECCCCEEEEEEECC QLKETTELYFKSMTQTLEPCLTKEKLIKYGIAIQELHGLQFDNEQCVLLEHSPLKYTYNA CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCCCCCCCCEEEEECCCCEEEECC ANQSLLLNAPSKILSPIDSEIADENIWDDGINAFLLNYRANYLHSKVGGEDSYFGQIQLG CCCEEEEECCHHHHCCHHHHHCCCCCCCCCCCEEEEEHHHHHHHHHCCCCCCEEEEEEEE FNFGPWRLRNLSSWQNLSSEKKFESAYIYAERGLKKIKSKLTVGDKYTSADLFDSVPFRG CCCCCCEECCCHHHHCCCCHHHHHHEEEEHHHHHHHHHHHCCCCCCCCCCHHHHCCCCCC FSLNKDESMIPFSQRTYYPTIRGIAKTNATVEVRQNGYLIYSTSVPPGQFEIGREQIADL EECCCCCCCCCCCCCCCCCHHHHHCCCCCEEEEECCCEEEEECCCCCCCHHCCHHHHHHC GVGVGVGVGVGVGVGVGVGVGVGVGVGVGVGVGVGVGVGVGVLDVSIYEKNGQVQNYTVP CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEECCCCEEEEECC YSTPVLSLPDGYSKYSVTIGRYREVNNDYIDPVFFEGTYIYGLPYGFTLFGGVQWANIYN CCCCEEECCCCCCEEEEEEEHEEECCCCCCCCEEECCEEEEECCCCEEEECCEEEEHHHC SYAIGASKDIGEYGALSFDWKTSVSKTDTSNENGHAYGIRYNKNIAQTNTEVSLASHYYY CEECCCCCCCCCCCCEEEECCCCCCCCCCCCCCCEEEEEEECCCHHCCCCEEEEEEEEEE SKNYRTFSEAIHSSEHDEFYDKNKKSTTSMLLSQALGSLGSVNLSYNYDKYWKHEGKKSI ECCCHHHHHHHCCCCCHHHHHCCCHHHHHHHHHHHHCCCCCEEEECCCHHHHHHCCHHHH IASYGKNLNGVSLSLSYTKSTSKISEENEDLFSFLLSVPLQKLTNHEMYATYQNSSSSKH HHHHCCCCCCEEEEEEECCCCHHHCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCC DMNHDLGITGVAFDSQLTWQARGQIEDKSKNQKATFLNASWRGTYGEIGANYSHNEINRD CCCCCCCEEEEEECCEEEEEECCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCHHHHCCC IGMNVSGGVIAHSSGITFGQSISDTAALVEAKGVSGAKVLGLPGVRTDFRGYTISSYLTP CCCCCCCCEEEECCCCCCCCCCCCHHHHEEECCCCCCEEEECCCCCCCCCCEEHHHHHHH YMNNFISIDPTTLPINTDIRQTDIQVVPTEGAIVKAVYKTSVGTNALIRITRTNGKPLAL HHCCEEEECCEEEECCCCCEECCEEEEECCCCEEEEEECCCCCCCEEEEEEECCCCCEEE STVLSLKNNDGVIQSTSIVGEDGQAYVSGLSGVQKLIASWGNKPSDTCTVFYSLPDKNKG EEEEEECCCCCEEEEEEEECCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCC QISFLNGVCK CEEECCCCCC >Mature Secondary Structure MKKTTITLFVLTSVFHSGNVFSRQYNFDYGSLSLPPGENASFLSVETLPGNYVVDVYLNN CCCEEEEEEEEHHHHHCCCEEEEEECCCCCCEECCCCCCCCEEEEEECCCCEEEEEEECC QLKETTELYFKSMTQTLEPCLTKEKLIKYGIAIQELHGLQFDNEQCVLLEHSPLKYTYNA CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCCCCCCCCEEEEECCCCEEEECC ANQSLLLNAPSKILSPIDSEIADENIWDDGINAFLLNYRANYLHSKVGGEDSYFGQIQLG CCCEEEEECCHHHHCCHHHHHCCCCCCCCCCCEEEEEHHHHHHHHHCCCCCCEEEEEEEE FNFGPWRLRNLSSWQNLSSEKKFESAYIYAERGLKKIKSKLTVGDKYTSADLFDSVPFRG CCCCCCEECCCHHHHCCCCHHHHHHEEEEHHHHHHHHHHHCCCCCCCCCCHHHHCCCCCC FSLNKDESMIPFSQRTYYPTIRGIAKTNATVEVRQNGYLIYSTSVPPGQFEIGREQIADL EECCCCCCCCCCCCCCCCCHHHHHCCCCCEEEEECCCEEEEECCCCCCCHHCCHHHHHHC GVGVGVGVGVGVGVGVGVGVGVGVGVGVGVGVGVGVGVGVGVLDVSIYEKNGQVQNYTVP CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEECCCCEEEEECC YSTPVLSLPDGYSKYSVTIGRYREVNNDYIDPVFFEGTYIYGLPYGFTLFGGVQWANIYN CCCCEEECCCCCCEEEEEEEHEEECCCCCCCCEEECCEEEEECCCCEEEECCEEEEHHHC SYAIGASKDIGEYGALSFDWKTSVSKTDTSNENGHAYGIRYNKNIAQTNTEVSLASHYYY CEECCCCCCCCCCCCEEEECCCCCCCCCCCCCCCEEEEEEECCCHHCCCCEEEEEEEEEE SKNYRTFSEAIHSSEHDEFYDKNKKSTTSMLLSQALGSLGSVNLSYNYDKYWKHEGKKSI ECCCHHHHHHHCCCCCHHHHHCCCHHHHHHHHHHHHCCCCCEEEECCCHHHHHHCCHHHH IASYGKNLNGVSLSLSYTKSTSKISEENEDLFSFLLSVPLQKLTNHEMYATYQNSSSSKH HHHHCCCCCCEEEEEEECCCCHHHCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCC DMNHDLGITGVAFDSQLTWQARGQIEDKSKNQKATFLNASWRGTYGEIGANYSHNEINRD CCCCCCCEEEEEECCEEEEEECCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCHHHHCCC IGMNVSGGVIAHSSGITFGQSISDTAALVEAKGVSGAKVLGLPGVRTDFRGYTISSYLTP CCCCCCCCEEEECCCCCCCCCCCCHHHHEEECCCCCCEEEECCCCCCCCCCEEHHHHHHH YMNNFISIDPTTLPINTDIRQTDIQVVPTEGAIVKAVYKTSVGTNALIRITRTNGKPLAL HHCCEEEECCEEEECCCCCEECCEEEEECCCCEEEEEECCCCCCCEEEEEEECCCCCEEE STVLSLKNNDGVIQSTSIVGEDGQAYVSGLSGVQKLIASWGNKPSDTCTVFYSLPDKNKG EEEEEECCCCCEEEEEEEECCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCC QISFLNGVCK CEEECCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 8097515 [H]