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The map label for this gene is yjfQ [H]

Identifier: 29144677

GI number: 29144677

Start: 4581392

End: 4582147

Strand: Reverse

Name: yjfQ [H]

Synonym: t4432

Alternate gene names: 29144677

Gene position: 4582147-4581392 (Counterclockwise)

Preceding gene: 29144678

Following gene: 29144675

Centisome position: 95.62

GC content: 54.1

Gene sequence:

>756_bases
ATGACTGAAGCACAAAGACATCAAATACTGCTGGATATGCTGGCACAGTTGGGCTTTGTTACCGTCGAAAACGTGATTGA
GCGTCTGGGAATCTCCCCGGCGACGGCGCGCCGCGACATCAACAAGCTCGACGAAAGCGGAAAACTTAAAAAAGTGCGCA
ACGGCGCAGAGGCCATTACCCAACAGCGGCCCCGCTGGACGCCGATGAATCTGCACCAGGCGCAAAACCACGATGAAAAA
GTACGCATCGCGAAAGCGGCGTCGCAGCTGGTAAACCCGGGTGAGAGCGTAGTGATTAACTGCGGCTCCACCGCTTTCCT
GCTGGGGCGCGAAATGTGCGGGAAGCCGGTACAGATCATTACCAACTATCTGCCGCTGGCGAATTATCTGATCGATCAAG
AGCATGACAGCGTGATTATCATGGGGGGTCAGTACAACAAAAGCCAGTCGATTACCCTGAGCCCGCAGGGAAGTGAAAAC
AGTCTCTATGCTGGCCACTGGATGTTTACCAGCGGAAAGGGCTTAACTGCGGATGGCCTGTACAAGACCGATATGCTAAC
CGCCATGGCGGAACAAAAAATGCTCAGCGTCGTCGGGAAACTGGTCGCGCTGGTCGATAGCAGTAAAATTGGCGAGCGCG
CGGGAATGCTGTTCAGCCGAGCCGATCAGATCGCTATGCTGATTACCGGCAAAAATGCCAATCCGCAGGTTTTGCAACAG
CTTGAAGCCCAGGGTGTAAGCATACTCCGCGTTTAA

Upstream 100 bases:

>100_bases
ATATCATGCCGGGATTACCCGGCATTTTTTCCATTTACTTTAGTATTTCCAGGCTATTTCAAATATCATCTTTTCAAATC
AATTTGTATCGGAATAGCTC

Downstream 100 bases:

>100_bases
AGATGCTGTCGGAAAAACGCTACCGTCGCCGACAACGCTTCTGGCGTAATGCGATGCCGCACGCCTGCGGCCCATAAACA
GGTCACATGCTTATCCAGCT

Product: transcriptional repressor UlaR

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 251; Mature: 250

Protein sequence:

>251_residues
MTEAQRHQILLDMLAQLGFVTVENVIERLGISPATARRDINKLDESGKLKKVRNGAEAITQQRPRWTPMNLHQAQNHDEK
VRIAKAASQLVNPGESVVINCGSTAFLLGREMCGKPVQIITNYLPLANYLIDQEHDSVIIMGGQYNKSQSITLSPQGSEN
SLYAGHWMFTSGKGLTADGLYKTDMLTAMAEQKMLSVVGKLVALVDSSKIGERAGMLFSRADQIAMLITGKNANPQVLQQ
LEAQGVSILRV

Sequences:

>Translated_251_residues
MTEAQRHQILLDMLAQLGFVTVENVIERLGISPATARRDINKLDESGKLKKVRNGAEAITQQRPRWTPMNLHQAQNHDEK
VRIAKAASQLVNPGESVVINCGSTAFLLGREMCGKPVQIITNYLPLANYLIDQEHDSVIIMGGQYNKSQSITLSPQGSEN
SLYAGHWMFTSGKGLTADGLYKTDMLTAMAEQKMLSVVGKLVALVDSSKIGERAGMLFSRADQIAMLITGKNANPQVLQQ
LEAQGVSILRV
>Mature_250_residues
TEAQRHQILLDMLAQLGFVTVENVIERLGISPATARRDINKLDESGKLKKVRNGAEAITQQRPRWTPMNLHQAQNHDEKV
RIAKAASQLVNPGESVVINCGSTAFLLGREMCGKPVQIITNYLPLANYLIDQEHDSVIIMGGQYNKSQSITLSPQGSENS
LYAGHWMFTSGKGLTADGLYKTDMLTAMAEQKMLSVVGKLVALVDSSKIGERAGMLFSRADQIAMLITGKNANPQVLQQL
EAQGVSILRV

Specific function: Represses ulaG and the ulaABCDEF operon [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH deoR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1790635, Length=251, Percent_Identity=96.8127490039841, Blast_Score=506, Evalue=1e-145,
Organism=Escherichia coli, GI1789059, Length=257, Percent_Identity=23.7354085603113, Blast_Score=77, Evalue=1e-15,
Organism=Escherichia coli, GI1789829, Length=220, Percent_Identity=25.4545454545455, Blast_Score=75, Evalue=3e-15,
Organism=Escherichia coli, GI1789170, Length=233, Percent_Identity=24.0343347639485, Blast_Score=74, Evalue=8e-15,
Organism=Escherichia coli, GI226510968, Length=147, Percent_Identity=29.2517006802721, Blast_Score=74, Evalue=1e-14,
Organism=Escherichia coli, GI1787540, Length=252, Percent_Identity=27.7777777777778, Blast_Score=74, Evalue=1e-14,
Organism=Escherichia coli, GI1789519, Length=254, Percent_Identity=25.9842519685039, Blast_Score=71, Evalue=8e-14,
Organism=Escherichia coli, GI87082344, Length=234, Percent_Identity=24.7863247863248, Blast_Score=67, Evalue=8e-13,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014036
- InterPro:   IPR001034
- InterPro:   IPR018356
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00455 DeoR; PF08220 HTH_DeoR [H]

EC number: NA

Molecular weight: Translated: 27487; Mature: 27356

Theoretical pI: Translated: 9.07; Mature: 9.07

Prosite motif: PS00894 HTH_DEOR_1 ; PS51000 HTH_DEOR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
4.4 %Met     (Translated Protein)
5.2 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
4.0 %Met     (Mature Protein)
4.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTEAQRHQILLDMLAQLGFVTVENVIERLGISPATARRDINKLDESGKLKKVRNGAEAIT
CCCHHHHHHHHHHHHHHCHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHH
QQRPRWTPMNLHQAQNHDEKVRIAKAASQLVNPGESVVINCGSTAFLLGREMCGKPVQII
HCCCCCCCCCHHHHCCCCHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHCCCHHHHH
TNYLPLANYLIDQEHDSVIIMGGQYNKSQSITLSPQGSENSLYAGHWMFTSGKGLTADGL
HHHHHHHHHHHCCCCCCEEEECCCCCCCCEEEECCCCCCCCEEEEEEEEECCCCCCCCCC
YKTDMLTAMAEQKMLSVVGKLVALVDSSKIGERAGMLFSRADQIAMLITGKNANPQVLQQ
HHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHH
LEAQGVSILRV
HHHCCEEEECC
>Mature Secondary Structure 
TEAQRHQILLDMLAQLGFVTVENVIERLGISPATARRDINKLDESGKLKKVRNGAEAIT
CCHHHHHHHHHHHHHHCHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHH
QQRPRWTPMNLHQAQNHDEKVRIAKAASQLVNPGESVVINCGSTAFLLGREMCGKPVQII
HCCCCCCCCCHHHHCCCCHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHCCCHHHHH
TNYLPLANYLIDQEHDSVIIMGGQYNKSQSITLSPQGSENSLYAGHWMFTSGKGLTADGL
HHHHHHHHHHHCCCCCCEEEECCCCCCCCEEEECCCCCCCCEEEEEEEEECCCCCCCCCC
YKTDMLTAMAEQKMLSVVGKLVALVDSSKIGERAGMLFSRADQIAMLITGKNANPQVLQQ
HHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHH
LEAQGVSILRV
HHHCCEEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA