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The map label for this gene is xerD [H]

Identifier: 29144590

GI number: 29144590

Start: 4489831

End: 4490856

Strand: Direct

Name: xerD [H]

Synonym: t4338

Alternate gene names: 29144590

Gene position: 4489831-4490856 (Clockwise)

Preceding gene: 29144589

Following gene: 29144591

Centisome position: 93.7

GC content: 49.51

Gene sequence:

>1026_bases
ATGAGCATCAGAAAACAGCCTAACGGAAAATGGTTGTGTGAATGCTACCCGAACGGACGGGATGGCAAGCGTGTACGCAA
GCAATTTGCGACTAAAGGCGAGGCCATAGCATTCGAAAACCACACCATGGATGAGGTGAACAAAAAACCGTGGCTGGGGG
AGAAAGAAGATCGGCGGCATTTGTCAGAAGTGATTGAGCAGTGGCATTCACTTTATGGGCAGACGCTGGCAGACCCCAAA
CGCCTGTTGGCAAAACTCAGCATTATTTGTAATGGTTTGGGCGATCCCATTGCCTCAGAGTTAACCGCAGGCGATTTTAC
GAAATACCGGGAAGCACGGTTAAAAGGTGAAGTAAAAAATGAAGATGGCGTGCTTATGTCGCCAGTTAAGCCCCGTACGG
TAAACCTTGAACAACGTAACCTATCATCTGTTTTTGGCACACTGAAAAAGCTGGGCCACTGGCCAGCACCCAACCCGCTC
GCTGGGCTGCCAACATTCAAAATCGCAGAGGGCGAACTGGCGTTCCTGGCACCGGAAGAAATTAAACGTCTACTGGATGC
CTGTGCTGATTCGCAGAGTCCCAGTTTGCTGATGATTGCAAAAATATGCCTGGCAACTGGCGCCCGATGGAGTGAAGCCG
AAAACCTGCAGGGCCATCAGCTATCAAAATACCGCATCACTTATACCAAGACCAAAGGCAAGAAAAACCGAACCGTGCCA
ATATCTCAGGAACTGTATGATGAACTCCCTAAAAACAGGGGGAAGTTATTCACGCCATGCAGAAAATCCTTTGAGCGTGC
AGTAAAGCGAGCTGGTATCGAACTGCCAGAAGGCCAGTGCACTCACGTACTGCGCCATACATTCGCCAGCCATTTTATGA
TGAACGGCGGAAACATACTGGTACTGCGCGATATTCTGGGCCATGCCGATATAAAAATGACGATGGTTTACGCTCACTTT
GCCCCTGACCACCTCGAAGATGCCGTGACAAAAAACCCGCTTCACAACCTCAATTGGAAGCGCTAA

Upstream 100 bases:

>100_bases
CAAAATTGTAGTTCACCAAGATGAAACATCATTTGAATGCTCGGTCGACGACATTGAAGCTATCGGGCGTGCAGTCAAAG
TAATCAAGAGCCTCTAACTT

Downstream 100 bases:

>100_bases
TTTATGGCGGCATTTTGGCGGCAGGGCATTAAAAACGCGTAAAACGGACAAATACTTAATAATACTAACTCGCTGTTTTT
AAACATAAAACACTGTTTTA

Product: phage integrase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 341; Mature: 340

Protein sequence:

>341_residues
MSIRKQPNGKWLCECYPNGRDGKRVRKQFATKGEAIAFENHTMDEVNKKPWLGEKEDRRHLSEVIEQWHSLYGQTLADPK
RLLAKLSIICNGLGDPIASELTAGDFTKYREARLKGEVKNEDGVLMSPVKPRTVNLEQRNLSSVFGTLKKLGHWPAPNPL
AGLPTFKIAEGELAFLAPEEIKRLLDACADSQSPSLLMIAKICLATGARWSEAENLQGHQLSKYRITYTKTKGKKNRTVP
ISQELYDELPKNRGKLFTPCRKSFERAVKRAGIELPEGQCTHVLRHTFASHFMMNGGNILVLRDILGHADIKMTMVYAHF
APDHLEDAVTKNPLHNLNWKR

Sequences:

>Translated_341_residues
MSIRKQPNGKWLCECYPNGRDGKRVRKQFATKGEAIAFENHTMDEVNKKPWLGEKEDRRHLSEVIEQWHSLYGQTLADPK
RLLAKLSIICNGLGDPIASELTAGDFTKYREARLKGEVKNEDGVLMSPVKPRTVNLEQRNLSSVFGTLKKLGHWPAPNPL
AGLPTFKIAEGELAFLAPEEIKRLLDACADSQSPSLLMIAKICLATGARWSEAENLQGHQLSKYRITYTKTKGKKNRTVP
ISQELYDELPKNRGKLFTPCRKSFERAVKRAGIELPEGQCTHVLRHTFASHFMMNGGNILVLRDILGHADIKMTMVYAHF
APDHLEDAVTKNPLHNLNWKR
>Mature_340_residues
SIRKQPNGKWLCECYPNGRDGKRVRKQFATKGEAIAFENHTMDEVNKKPWLGEKEDRRHLSEVIEQWHSLYGQTLADPKR
LLAKLSIICNGLGDPIASELTAGDFTKYREARLKGEVKNEDGVLMSPVKPRTVNLEQRNLSSVFGTLKKLGHWPAPNPLA
GLPTFKIAEGELAFLAPEEIKRLLDACADSQSPSLLMIAKICLATGARWSEAENLQGHQLSKYRITYTKTKGKKNRTVPI
SQELYDELPKNRGKLFTPCRKSFERAVKRAGIELPEGQCTHVLRHTFASHFMMNGGNILVLRDILGHADIKMTMVYAHFA
PDHLEDAVTKNPLHNLNWKR

Specific function: Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The xerC-xerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell div

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'phage' integrase family. XerD subfamily [H]

Homologues:

Organism=Escherichia coli, GI1786748, Length=234, Percent_Identity=27.3504273504274, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI1789261, Length=196, Percent_Identity=29.0816326530612, Blast_Score=63, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011010
- InterPro:   IPR013762
- InterPro:   IPR002104
- InterPro:   IPR010998
- InterPro:   IPR023109
- InterPro:   IPR004107
- InterPro:   IPR011932 [H]

Pfam domain/function: PF02899 Phage_integr_N; PF00589 Phage_integrase [H]

EC number: NA

Molecular weight: Translated: 38558; Mature: 38427

Theoretical pI: Translated: 9.91; Mature: 9.91

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.1 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
2.1 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSIRKQPNGKWLCECYPNGRDGKRVRKQFATKGEAIAFENHTMDEVNKKPWLGEKEDRRH
CCCCCCCCCCEEEEECCCCCCHHHHHHHHHCCCCEEEECCCCHHHHCCCCCCCCHHHHHH
LSEVIEQWHSLYGQTLADPKRLLAKLSIICNGLGDPIASELTAGDFTKYREARLKGEVKN
HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCHHHHHHCCCHHHHHHHHHHCCCCCC
EDGVLMSPVKPRTVNLEQRNLSSVFGTLKKLGHWPAPNPLAGLPTFKIAEGELAFLAPEE
CCCEEECCCCCCEECCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEECCCCEEEECHHH
IKRLLDACADSQSPSLLMIAKICLATGARWSEAENLQGHQLSKYRITYTKTKGKKNRTVP
HHHHHHHHCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEEEEECCCCCCCCCC
ISQELYDELPKNRGKLFTPCRKSFERAVKRAGIELPEGQCTHVLRHTFASHFMMNGGNIL
CCHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCCEE
VLRDILGHADIKMTMVYAHFAPDHLEDAVTKNPLHNLNWKR
EEHHHHCCCCEEEEEEEEECCCHHHHHHHHCCCCCCCCCCC
>Mature Secondary Structure 
SIRKQPNGKWLCECYPNGRDGKRVRKQFATKGEAIAFENHTMDEVNKKPWLGEKEDRRH
CCCCCCCCCEEEEECCCCCCHHHHHHHHHCCCCEEEECCCCHHHHCCCCCCCCHHHHHH
LSEVIEQWHSLYGQTLADPKRLLAKLSIICNGLGDPIASELTAGDFTKYREARLKGEVKN
HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCHHHHHHCCCHHHHHHHHHHCCCCCC
EDGVLMSPVKPRTVNLEQRNLSSVFGTLKKLGHWPAPNPLAGLPTFKIAEGELAFLAPEE
CCCEEECCCCCCEECCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEECCCCEEEECHHH
IKRLLDACADSQSPSLLMIAKICLATGARWSEAENLQGHQLSKYRITYTKTKGKKNRTVP
HHHHHHHHCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEEEEECCCCCCCCCC
ISQELYDELPKNRGKLFTPCRKSFERAVKRAGIELPEGQCTHVLRHTFASHFMMNGGNIL
CCHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCCEE
VLRDILGHADIKMTMVYAHFAPDHLEDAVTKNPLHNLNWKR
EEHHHHCCCCEEEEEEEEECCCHHHHHHHHCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA