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The map label for this gene is yjcD [H]

Identifier: 29144436

GI number: 29144436

Start: 4335921

End: 4337270

Strand: Direct

Name: yjcD [H]

Synonym: t4174

Alternate gene names: 29144436

Gene position: 4335921-4337270 (Clockwise)

Preceding gene: 29144435

Following gene: 29144437

Centisome position: 90.48

GC content: 57.04

Gene sequence:

>1350_bases
ATGTCTACGCCTTCAGCGCGTACCGGCGGTTCACTCGACGCCTGGTTTAAAATTTCACAACGCGGGAGCACCGTTCGCCA
GGAAGTCGTTGCTGGCTTAACCACGTTTCTCGCGATGGTTTACTCCGTCATCGTGGTGCCAGGGATGCTGGGTAAAGCCG
GGTTCCCGCCTGCCGCCGTCTTTGTAGCGACCTGCCTGGTCGCAGGCGTCGGCTCTATTGTTATGGGGCTATGGGCGAAT
CTGCCGCTGGCTATCGGTTGCGCTATCTCGTTGACGGCGTTTACCGCGTTTAGCCTGGTCCTGGGGCAGCATATTAGCGT
CCCGGTCGCGCTTGGCGCCGTATTCCTGATGGGCGTACTGTTTACCATTATCTCCGCTACCGGCATTCGTAGCTGGATTT
TGCGTAACTTGCCGCAGGGCGTGGCCCACGGAACCGGTATCGGTATTGGCCTGTTTTTGTTGCTGATTGCCGCCAACGGC
GTCGGCCTGGTCATTAAAAACCCGCTGGATGGCCTGCCGGTCGCGCTGGGCGATTTCGATACCTTCCCGGTGATTATGTC
GCTTGTGGGTCTGGCTGTTATTCTCGGTCTGGAAAAGCTGAAAGTCCCCGGCGGCATTCTGTTGACCATTATTGGCATTT
CTATTGTGGGTTTGCTCTTCGATCCTAACGTCCATTTTTCCGGCATTTTCGCCATGCCTTCGTTGAGCGATGAAAACGGC
AACTCGCTGATCGGCAGCCTGGATATTATGGGCGCGTTAAACCCTGTCGTTCTGCCAAGCGTGCTGGCGCTGGTGATGAC
GGCGGTGTTTGATGCGACCGGCACGATTCGTGCGGTCGCAGGGCAGGCTAATCTGCTGGACAGAGACGGACAAATTATCG
ATGGCGGCAAAGCGCTAACCACCGACTCACTGAGTAGCGTTTTCTCCGGCCTGGTCGGGGCGGCGCCAGCCGCGGTGTAT
ATCGAGTCTGCGGCCGGTACGGCGGCGGGTGGTAAAACGGGCCTGACGGCGATTACCGTGGGCGTGCTGTTTTTGCTGAT
CTTGTTTCTTTCGCCGCTCTCTTATCTCGTTCCCGTCTACGCAACCGCCCCGGCGCTCATGTATGTCGGTCTGCTGATGC
TGAGTAACGTGGCGAAAATCGATTTTGCTGATTTCGTCGATGCGATGGCGGGGCTGGTAACGGCTGTATTTATTGTACTG
ACCTGTAACATCGTCACCGGGATTATGATCGGCTTTGCCACGCTGGTCGTCGGGCGTCTGGTTTCTGGTGAATGGCGTAA
GCTGAATATCGGAACTGTCGTCATTGCGGTCGCGCTGGTCGCTTTTTATGCCGGCGGCTGGGCTATCTAG

Upstream 100 bases:

>100_bases
CCGGCTGTCGTAAATGTAGCACAAGGAGATAACGTTGCGCTGTTAGTGGATTACCTCCCACGTATACCGACGAATAATAA
ATTCTCAGGGGATGTTTTCT

Downstream 100 bases:

>100_bases
TTCTGCCTTCATTCTGAAAAATGGGCGGCGTTGGTCGCCCGTTTTCATTTTCAGGACACATCACGTTACCTTTTGCGTTA
ATCTGAAGAAGGTGAAACCG

Product: xanthine/uracil permeases family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 449; Mature: 448

Protein sequence:

>449_residues
MSTPSARTGGSLDAWFKISQRGSTVRQEVVAGLTTFLAMVYSVIVVPGMLGKAGFPPAAVFVATCLVAGVGSIVMGLWAN
LPLAIGCAISLTAFTAFSLVLGQHISVPVALGAVFLMGVLFTIISATGIRSWILRNLPQGVAHGTGIGIGLFLLLIAANG
VGLVIKNPLDGLPVALGDFDTFPVIMSLVGLAVILGLEKLKVPGGILLTIIGISIVGLLFDPNVHFSGIFAMPSLSDENG
NSLIGSLDIMGALNPVVLPSVLALVMTAVFDATGTIRAVAGQANLLDRDGQIIDGGKALTTDSLSSVFSGLVGAAPAAVY
IESAAGTAAGGKTGLTAITVGVLFLLILFLSPLSYLVPVYATAPALMYVGLLMLSNVAKIDFADFVDAMAGLVTAVFIVL
TCNIVTGIMIGFATLVVGRLVSGEWRKLNIGTVVIAVALVAFYAGGWAI

Sequences:

>Translated_449_residues
MSTPSARTGGSLDAWFKISQRGSTVRQEVVAGLTTFLAMVYSVIVVPGMLGKAGFPPAAVFVATCLVAGVGSIVMGLWAN
LPLAIGCAISLTAFTAFSLVLGQHISVPVALGAVFLMGVLFTIISATGIRSWILRNLPQGVAHGTGIGIGLFLLLIAANG
VGLVIKNPLDGLPVALGDFDTFPVIMSLVGLAVILGLEKLKVPGGILLTIIGISIVGLLFDPNVHFSGIFAMPSLSDENG
NSLIGSLDIMGALNPVVLPSVLALVMTAVFDATGTIRAVAGQANLLDRDGQIIDGGKALTTDSLSSVFSGLVGAAPAAVY
IESAAGTAAGGKTGLTAITVGVLFLLILFLSPLSYLVPVYATAPALMYVGLLMLSNVAKIDFADFVDAMAGLVTAVFIVL
TCNIVTGIMIGFATLVVGRLVSGEWRKLNIGTVVIAVALVAFYAGGWAI
>Mature_448_residues
STPSARTGGSLDAWFKISQRGSTVRQEVVAGLTTFLAMVYSVIVVPGMLGKAGFPPAAVFVATCLVAGVGSIVMGLWANL
PLAIGCAISLTAFTAFSLVLGQHISVPVALGAVFLMGVLFTIISATGIRSWILRNLPQGVAHGTGIGIGLFLLLIAANGV
GLVIKNPLDGLPVALGDFDTFPVIMSLVGLAVILGLEKLKVPGGILLTIIGISIVGLLFDPNVHFSGIFAMPSLSDENGN
SLIGSLDIMGALNPVVLPSVLALVMTAVFDATGTIRAVAGQANLLDRDGQIIDGGKALTTDSLSSVFSGLVGAAPAAVYI
ESAAGTAAGGKTGLTAITVGVLFLLILFLSPLSYLVPVYATAPALMYVGLLMLSNVAKIDFADFVDAMAGLVTAVFIVLT
CNIVTGIMIGFATLVVGRLVSGEWRKLNIGTVVIAVALVAFYAGGWAI

Specific function: Unknown

COG id: COG2252

COG function: function code R; Permeases

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the xanthine/uracil permease family. AzgA purine transporter (TC 2.A.1.40) subfamily [H]

Homologues:

Organism=Escherichia coli, GI1790499, Length=449, Percent_Identity=97.3273942093541, Blast_Score=842, Evalue=0.0,
Organism=Escherichia coli, GI48994909, Length=450, Percent_Identity=82.2222222222222, Blast_Score=706, Evalue=0.0,
Organism=Escherichia coli, GI87082309, Length=431, Percent_Identity=40.1392111368909, Blast_Score=300, Evalue=2e-82,
Organism=Escherichia coli, GI1790150, Length=439, Percent_Identity=35.3075170842825, Blast_Score=251, Evalue=8e-68,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006043 [H]

Pfam domain/function: PF00860 Xan_ur_permease [H]

EC number: NA

Molecular weight: Translated: 45769; Mature: 45638

Theoretical pI: Translated: 6.25; Mature: 6.25

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSTPSARTGGSLDAWFKISQRGSTVRQEVVAGLTTFLAMVYSVIVVPGMLGKAGFPPAAV
CCCCCCCCCCCHHHHEEEHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHH
FVATCLVAGVGSIVMGLWANLPLAIGCAISLTAFTAFSLVLGQHISVPVALGAVFLMGVL
HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
FTIISATGIRSWILRNLPQGVAHGTGIGIGLFLLLIAANGVGLVIKNPLDGLPVALGDFD
HHHHHHHHHHHHHHHHCCHHHHCCCCHHHHHHHHHHHCCCCEEEECCCCCCCCEECCCCC
TFPVIMSLVGLAVILGLEKLKVPGGILLTIIGISIVGLLFDPNVHFSGIFAMPSLSDENG
HHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCC
NSLIGSLDIMGALNPVVLPSVLALVMTAVFDATGTIRAVAGQANLLDRDGQIIDGGKALT
CCEEEHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCHHHHCCCCHHCCCCCCEECCCCCCC
TDSLSSVFSGLVGAAPAAVYIESAAGTAAGGKTGLTAITVGVLFLLILFLSPLSYLVPVY
HHHHHHHHHHHHHCCCHHHEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
ATAPALMYVGLLMLSNVAKIDFADFVDAMAGLVTAVFIVLTCNIVTGIMIGFATLVVGRL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VSGEWRKLNIGTVVIAVALVAFYAGGWAI
HCCCCEEEEHHHHHHHHHHHHHHCCCCCC
>Mature Secondary Structure 
STPSARTGGSLDAWFKISQRGSTVRQEVVAGLTTFLAMVYSVIVVPGMLGKAGFPPAAV
CCCCCCCCCCHHHHEEEHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHH
FVATCLVAGVGSIVMGLWANLPLAIGCAISLTAFTAFSLVLGQHISVPVALGAVFLMGVL
HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
FTIISATGIRSWILRNLPQGVAHGTGIGIGLFLLLIAANGVGLVIKNPLDGLPVALGDFD
HHHHHHHHHHHHHHHHCCHHHHCCCCHHHHHHHHHHHCCCCEEEECCCCCCCCEECCCCC
TFPVIMSLVGLAVILGLEKLKVPGGILLTIIGISIVGLLFDPNVHFSGIFAMPSLSDENG
HHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCC
NSLIGSLDIMGALNPVVLPSVLALVMTAVFDATGTIRAVAGQANLLDRDGQIIDGGKALT
CCEEEHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCHHHHCCCCHHCCCCCCEECCCCCCC
TDSLSSVFSGLVGAAPAAVYIESAAGTAAGGKTGLTAITVGVLFLLILFLSPLSYLVPVY
HHHHHHHHHHHHHCCCHHHEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
ATAPALMYVGLLMLSNVAKIDFADFVDAMAGLVTAVFIVLTCNIVTGIMIGFATLVVGRL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VSGEWRKLNIGTVVIAVALVAFYAGGWAI
HCCCCEEEEHHHHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]